Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:36:53 (2898213): wrapper (7.7.26015): starting
18:36:53 (2898213): wrapper: running run_atlas (--nthreads 3)
[2026-01-29 18:36:53] Arguments: --nthreads 3
[2026-01-29 18:36:53] Threads: 3
[2026-01-29 18:36:53] Checking for CVMFS
[2026-01-29 18:36:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 18:36:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 18:36:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 18:36:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 18:36:53] 2.9.2.0 193215 165943 112268 155649 3 50 22444227 36864000 12 130560 1 50749887 99.972 5532472 1535 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 18:36:53] CVMFS is ok
[2026-01-29 18:36:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 18:36:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 18:36:53] Further information can be found at the LHC@home message board.
[2026-01-29 18:36:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 18:36:53] Checking for apptainer binary...
[2026-01-29 18:36:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 18:36:53] Running /usr/bin/apptainer --version
[2026-01-29 18:36:53] apptainer version 1.4.1-1.1
[2026-01-29 18:36:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 18:36:53] thA383
[2026-01-29 18:36:53] apptainer works
[2026-01-29 18:36:53] Set ATHENA_PROC_NUMBER=3
[2026-01-29 18:36:53] Set ATHENA_CORE_NUMBER=3
[2026-01-29 18:36:53] Starting ATLAS job with PandaID=6987907710
[2026-01-29 18:36:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 20:07:17]  *** The last 200 lines of the pilot log: ***
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | job 6987907710 has completed (purged errors)
[2026-01-29 20:07:17] 2026-01-29 19:06:53,318 | INFO     | overall cleanup function is called
[2026-01-29 20:07:17] 2026-01-29 19:06:54,324 | INFO     | --- collectZombieJob: --- 10, [2906676]
[2026-01-29 20:07:17] 2026-01-29 19:06:54,325 | INFO     | zombie collector waiting for pid 2906676
[2026-01-29 20:07:17] 2026-01-29 19:06:54,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 20:07:17] 2026-01-29 19:06:54,325 | INFO     | collected zombie processes
[2026-01-29 20:07:17] 2026-01-29 19:06:54,325 | INFO     | will attempt to kill all subprocesses of pid=2906676
[2026-01-29 20:07:17] 2026-01-29 19:06:54,366 | INFO     | process IDs to be killed: [2906676] (in reverse order)
[2026-01-29 20:07:17] 2026-01-29 19:06:54,390 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 20:07:17] 2026-01-29 19:06:54,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 20:07:17] 2026-01-29 19:06:54,391 | INFO     | did not find any defunct processes belonging to 2906676
[2026-01-29 20:07:17] 2026-01-29 19:06:54,392 | INFO     | did not find any defunct processes belonging to 2906676
[2026-01-29 20:07:17] 2026-01-29 19:06:54,393 | INFO     | ready for new job
[2026-01-29 20:07:17] 2026-01-29 19:06:54,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 20:07:17] 2026-01-29 19:06:54,393 | INFO     | **************************************
[2026-01-29 20:07:17] 2026-01-29 19:06:54,393 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 20:07:17] 2026-01-29 19:06:54,393 | INFO     | **************************************
[2026-01-29 20:07:17] 2026-01-29 19:06:54,393 | INFO     | 
[2026-01-29 20:07:17] 2026-01-29 19:06:54,394 | INFO     | architecture information:
[2026-01-29 20:07:17] 2026-01-29 19:06:54,394 | INFO     | executing command: cat /etc/os-release
[2026-01-29 20:07:17] 2026-01-29 19:06:54,403 | INFO     | cat /etc/os-release:
[2026-01-29 20:07:17] NAME="CentOS Linux"
[2026-01-29 20:07:17] VERSION="7 (Core)"
[2026-01-29 20:07:17] ID="centos"
[2026-01-29 20:07:17] ID_LIKE="rhel fedora"
[2026-01-29 20:07:17] VERSION_ID="7"
[2026-01-29 20:07:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 20:07:17] ANSI_COLOR="0;31"
[2026-01-29 20:07:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 20:07:17] HOME_URL="https://www.centos.org/"
[2026-01-29 20:07:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 20:07:17] 
[2026-01-29 20:07:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 20:07:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 20:07:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 20:07:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 20:07:17] 
[2026-01-29 20:07:17] 2026-01-29 19:06:54,403 | INFO     | **************************************
[2026-01-29 20:07:17] 2026-01-29 19:06:54,906 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 20:07:17] 2026-01-29 19:06:54,919 | INFO     | sufficient remaining disk space (232985198592 B)
[2026-01-29 20:07:17] 2026-01-29 19:06:54,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 20:07:17] 2026-01-29 19:06:54,919 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 20:07:17] 2026-01-29 19:06:54,919 | INFO     | update_server=False
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 20:07:17] 2026-01-29 19:06:54,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 20:07:17] 2026-01-29 19:06:55,174 | INFO     | all data control threads have been joined
[2026-01-29 20:07:17] 2026-01-29 19:06:55,244 | INFO     | all job control threads have been joined
[2026-01-29 20:07:17] 2026-01-29 19:06:55,346 | INFO     | all payload control threads have been joined
[2026-01-29 20:07:17] 2026-01-29 19:06:55,925 | INFO     | [job] retrieve thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:55,925 | INFO     | [job] queue monitor thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,179 | INFO     | [data] control thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,180 | WARNING  | process 2906676 can no longer be monitored (due to stat problems) - aborting
[2026-01-29 20:07:17] 2026-01-29 19:06:56,210 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 20:07:17] 2026-01-29 19:06:56,245 | INFO     | number of running child processes to parent process 2906676: 1
[2026-01-29 20:07:17] 2026-01-29 19:06:56,245 | INFO     | maximum number of monitored processes: 6
[2026-01-29 20:07:17] 2026-01-29 19:06:56,245 | INFO     | aborting job monitoring since job object (job id=6987907710) has expired
[2026-01-29 20:07:17] 2026-01-29 19:06:56,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 20:07:17] 2026-01-29 19:06:56,245 | INFO     | will abort loop
[2026-01-29 20:07:17] 2026-01-29 19:06:56,249 | INFO     | [job] control thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,352 | INFO     | [payload] control thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,464 | INFO     | [job] validate thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,570 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,578 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,617 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,762 | INFO     | [data] copytool_in thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:56,926 | INFO     | [data] copytool_out thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:57,041 | INFO     | [payload] validate_post thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:57,251 | INFO     | [job] job monitor thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:57,469 | INFO     | [payload] failed_post thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:06:57,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 20:07:17] 2026-01-29 19:07:00,576 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-29 20:07:17] 2026-01-29 19:07:01,635 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:07:05,263 | INFO     | job.realtimelogging is not enabled
[2026-01-29 20:07:17] 2026-01-29 19:07:06,268 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 20:07:17] 2026-01-29 19:07:10,403 | INFO     | [monitor] cgroup control has ended
[2026-01-29 20:07:17] 2026-01-29 19:07:12,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139646849275712)>', '<ExcThread(monitor, started 139646231115520)>']
[2026-01-29 20:07:17] 2026-01-29 19:07:13,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 20:07:17] 2026-01-29 19:07:13,011 | INFO     | [monitor] control thread has ended
[2026-01-29 20:07:17] 2026-01-29 19:07:17,459 | INFO     | all workflow threads have been joined
[2026-01-29 20:07:17] 2026-01-29 19:07:17,460 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 20:07:17] 2026-01-29 19:07:17,461 | INFO     | traces error code: 0
[2026-01-29 20:07:17] 2026-01-29 19:07:17,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 20:07:17] 2026-01-29 19:07:17,511 [wrapper] ==== pilot stdout END ====
[2026-01-29 20:07:17] 2026-01-29 19:07:17,514 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 20:07:17] 2026-01-29 19:07:17,516 [wrapper] pilotpid: 2902257
[2026-01-29 20:07:17] 2026-01-29 19:07:17,518 [wrapper] Pilot exit status: 0
[2026-01-29 20:07:17] 2026-01-29 19:07:17,526 [wrapper] pandaids: 6987907710
[2026-01-29 20:07:17] 2026-01-29 19:07:17,541 [wrapper] cleanup supervisor_pilot 2911951 2902258
[2026-01-29 20:07:17] 2026-01-29 19:07:17,543 [wrapper] Test setup, not cleaning
[2026-01-29 20:07:17] 2026-01-29 19:07:17,545 [wrapper] apfmon messages muted
[2026-01-29 20:07:17] 2026-01-29 19:07:17,548 [wrapper] ==== wrapper stdout END ====
[2026-01-29 20:07:17] 2026-01-29 19:07:17,550 [wrapper] ==== wrapper stderr END ====
[2026-01-29 20:07:17]  *** Error codes and diagnostics ***
[2026-01-29 20:07:17]     "exeErrorCode": 0,
[2026-01-29 20:07:17]     "exeErrorDiag": "",
[2026-01-29 20:07:17]     "pilotErrorCode": 0,
[2026-01-29 20:07:17]     "pilotErrorDiag": "",
[2026-01-29 20:07:17]  *** Listing of results directory ***
[2026-01-29 20:07:17] total 662252
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc    584422 Jan 28 23:30 pilot3.tar.gz
[2026-01-29 20:07:17] -rwx------ 1 boinc boinc     36322 Jan 28 23:32 runpilot2-wrapper.sh
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc      5111 Jan 28 23:33 queuedata.json
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc       100 Jan 29 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 20:07:17] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 18:36 run_atlas
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc       105 Jan 29 18:36 job.xml
[2026-01-29 20:07:17] -rw-r--r-- 2 boinc boinc 491209062 Jan 29 18:36 EVNT.48317949._000075.pool.root.1
[2026-01-29 20:07:17] -rw-r--r-- 2 boinc boinc    597761 Jan 29 18:36 input.tar.gz
[2026-01-29 20:07:17] -rw-r--r-- 2 boinc boinc     15845 Jan 29 18:36 start_atlas.sh
[2026-01-29 20:07:17] drwxrwx--x 2 boinc boinc      4096 Jan 29 18:36 shared
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc         0 Jan 29 18:36 boinc_setup_complete
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc      6439 Jan 29 18:36 init_data.xml
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc         0 Jan 29 18:36 boinc_lockfile
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc      2521 Jan 29 18:36 pandaJob.out
[2026-01-29 20:07:17] -rw------- 1 boinc boinc   1009660 Jan 29 18:37 agis_schedconf.cvmfs.json
[2026-01-29 20:07:17] -rw------- 1 boinc boinc   1511668 Jan 29 18:37 agis_ddmendpoints.agis.ALL.json
[2026-01-29 20:07:17] -rw------- 1 boinc boinc       419 Jan 29 18:37 workernode_map.json
[2026-01-29 20:07:17] drwx------ 5 boinc boinc      4096 Jan 29 18:37 pilot3
[2026-01-29 20:07:17] -rw------- 1 boinc boinc        95 Jan 29 20:06 pilot_heartbeat.json
[2026-01-29 20:07:17] -rw------- 1 boinc boinc 180906328 Jan 29 20:06 HITS.48317952._003748.pool.root.1
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc       530 Jan 29 20:06 boinc_task_state.xml
[2026-01-29 20:07:17] -rw------- 1 boinc boinc      1031 Jan 29 20:06 memory_monitor_summary.json
[2026-01-29 20:07:17] -rw------- 1 boinc boinc    265045 Jan 29 20:06 log.48317952._003748.job.log.tgz.1
[2026-01-29 20:07:17] -rw------- 1 boinc boinc      6303 Jan 29 20:06 heartbeat.json
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc      8192 Jan 29 20:07 boinc_mmap_file
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc        27 Jan 29 20:07 wrapper_checkpoint.txt
[2026-01-29 20:07:17] -rw------- 1 boinc boinc      5148 Jan 29 20:07 pilotlog.txt
[2026-01-29 20:07:17] -rw------- 1 boinc boinc    784566 Jan 29 20:07 log.48317952._003748.job.log.1
[2026-01-29 20:07:17] -rw------- 1 boinc boinc       357 Jan 29 20:07 output.list
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc       620 Jan 29 20:07 runtime_log
[2026-01-29 20:07:17] -rw------- 1 boinc boinc   1064960 Jan 29 20:07 result.tar.gz
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc      8896 Jan 29 20:07 runtime_log.err
[2026-01-29 20:07:17] -rw------- 1 boinc boinc       657 Jan 29 20:07 qPJNDmWGT58n9Rq4apOajLDm4fhM0noT9bVooX4SDmtHHKDmw3QMSo.diag
[2026-01-29 20:07:17] -rw-r--r-- 1 boinc boinc     12998 Jan 29 20:07 stderr.txt
[2026-01-29 20:07:17] HITS file was successfully produced:
[2026-01-29 20:07:17] -rw------- 1 boinc boinc 180906328 Jan 29 20:06 shared/HITS.pool.root.1
[2026-01-29 20:07:17]  *** Contents of shared directory: ***
[2026-01-29 20:07:17] total 658016
[2026-01-29 20:07:17] -rw-r--r-- 2 boinc boinc 491209062 Jan 29 18:36 ATLAS.root_0
[2026-01-29 20:07:17] -rw-r--r-- 2 boinc boinc    597761 Jan 29 18:36 input.tar.gz
[2026-01-29 20:07:17] -rw-r--r-- 2 boinc boinc     15845 Jan 29 18:36 start_atlas.sh
[2026-01-29 20:07:17] -rw------- 1 boinc boinc 180906328 Jan 29 20:06 HITS.pool.root.1
[2026-01-29 20:07:17] -rw------- 1 boinc boinc   1064960 Jan 29 20:07 result.tar.gz
20:07:18 (2898213): run_atlas exited; CPU time 15493.208820
20:07:18 (2898213): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN