Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:37 (1907201): wrapper (7.7.26015): starting
20:19:37 (1907201): wrapper: running run_atlas (--nthreads 12)
[2026-01-28 20:19:37] Arguments: --nthreads 12
[2026-01-28 20:19:37] Threads: 12
[2026-01-28 20:19:37] Checking for CVMFS
[2026-01-28 20:19:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 20:19:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 20:19:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 20:19:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 20:19:38] 2.11.5.0 3953955 119958 249052 155626 1 1190 33480449 45568000 13997 130560 0 956755068 99.792 600691735 25413 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-28 20:19:38] CVMFS is ok
[2026-01-28 20:19:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 20:19:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 20:19:38] Further information can be found at the LHC@home message board.
[2026-01-28 20:19:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 20:19:38] Checking for apptainer binary...
[2026-01-28 20:19:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 20:19:38] Running /usr/bin/apptainer --version
[2026-01-28 20:19:38] apptainer version 1.4.1-1.el9
[2026-01-28 20:19:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 20:19:39] wns0046.triumf.lcg
[2026-01-28 20:19:39] apptainer works
[2026-01-28 20:19:39] Set ATHENA_PROC_NUMBER=12
[2026-01-28 20:19:39] Set ATHENA_CORE_NUMBER=12
[2026-01-28 20:19:39] Starting ATLAS job with PandaID=6986148724
[2026-01-28 20:19:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 20:25:39]  *** The last 200 lines of the pilot log: ***
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | wrong length of table data, x=[1769660506.0], y=[883.0] (must be same and length>=4)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,191 | INFO     | could have reported an average CPU frequency of 2629 MHz (4 samples)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | ..............................
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . Timing measurements:
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . get job = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . initial setup = 20 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . payload setup = 32 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . stage-in = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . payload execution = 86 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . stage-out = 1 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . log creation = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | ..............................
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6986148724/pilotlog.txt
[2026-01-28 20:25:39] 2026-01-29 04:24:48,208 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-28 20:25:39] - Log from pilotlog.txt -
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6986148724/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | INFO     | extracted standard info from prmon json
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | wrong length of table data, x=[1769660506.0], y=[883.0] (must be same and length>=4)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,191 | INFO     | could have reported an average CPU frequency of 2629 MHz (4 samples)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | ..............................
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . Timing measurements:
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . get job = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . initial setup = 20 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . payload setup = 32 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . stage-in = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . payload execution = 86 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . stage-out = 1 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . log creation = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | ..............................
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6986148724/pilotlog.txt
[2026-01-28 20:25:39] 2026-01-29 04:24:48,209 | WARNING  | 
[2026-01-28 20:25:39] [begin log extracts]
[2026-01-28 20:25:39] - Log from pilotlog.txt -
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6986148724/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | INFO     | extracted standard info from prmon json
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 20:25:39] 2026-01-29 04:24:48,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 20:25:39] 2026-01-29 04:24:48,184 | WARNING  | wrong length of table data, x=[1769660506.0], y=[883.0] (must be same and length>=4)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,191 | INFO     | could have reported an average CPU frequency of 2629 MHz (4 samples)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | ..............................
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . Timing measurements:
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . get job = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . initial setup = 20 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . payload setup = 32 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . stage-in = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . payload execution = 86 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . stage-out = 1 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | . log creation = 0 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | ..............................
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-28 20:25:39] 2026-01-29 04:24:48,192 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6986148724/pilotlog.txt
[2026-01-28 20:25:39] [end log extracts]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,209 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,210 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-28 20:25:39] 2026-01-29 04:24:48,398 | INFO     | time since job start (256s) is within the limit (349056.0s)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,399 | INFO     | 276s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-28 20:25:39] 2026-01-29 04:24:48,501 | INFO     | 
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | job summary report
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | --------------------------------------------------
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | PanDA job id: 6986148724
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | task id: 48317931
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-28 20:22:33,490 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | pilot state: failed 
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | transexitcode: 65
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | exeerrorcode: 65
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | exitcode: 65
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | cpuconsumptiontime: 14 s
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | nevents: 0
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | neventsw: 0
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | pid: 1922488
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | pgrp: 1922488
[2026-01-28 20:25:39] 2026-01-29 04:24:48,502 | INFO     | corecount: 12
[2026-01-28 20:25:39] 2026-01-29 04:24:48,503 | INFO     | event service: False
[2026-01-28 20:25:39] 2026-01-29 04:24:48,503 | INFO     | sizes: {0: 2284173, 11: 2284173, 123: 2307399, 125: 2311691, 127: 2311719, 244: 2311885}
[2026-01-28 20:25:39] 2026-01-29 04:24:48,503 | INFO     | --------------------------------------------------
[2026-01-28 20:25:39] 2026-01-29 04:24:48,503 | INFO     | 
[2026-01-28 20:25:39] 2026-01-29 04:24:48,503 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,541 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | job 6986148724 has completed (purged errors)
[2026-01-28 20:25:39] 2026-01-29 04:24:48,542 | INFO     | overall cleanup function is called
[2026-01-28 20:25:39] 2026-01-29 04:24:49,549 | INFO     | --- collectZombieJob: --- 10, [1922488]
[2026-01-28 20:25:39] 2026-01-29 04:24:49,550 | INFO     | zombie collector waiting for pid 1922488
[2026-01-28 20:25:39] 2026-01-29 04:24:49,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 20:25:39] 2026-01-29 04:24:49,550 | INFO     | collected zombie processes
[2026-01-28 20:25:39] 2026-01-29 04:24:49,551 | INFO     | will attempt to kill all subprocesses of pid=1922488
[2026-01-28 20:25:39] 2026-01-29 04:24:51,874 | INFO     | PID=1914298 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 20:25:39] 2026-01-29 04:24:51,874 | INFO     | .. there are 21 such processes running
[2026-01-28 20:25:39] 2026-01-29 04:24:51,884 | INFO     | process IDs to be killed: [1922488] (in reverse order)
[2026-01-28 20:25:39] 2026-01-29 04:24:51,949 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 20:25:39] 2026-01-29 04:24:51,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 20:25:39] 2026-01-29 04:24:51,956 | INFO     | did not find any defunct processes belonging to 1922488
[2026-01-28 20:25:39] 2026-01-29 04:24:51,962 | INFO     | did not find any defunct processes belonging to 1922488
[2026-01-28 20:25:39] 2026-01-29 04:24:51,963 | INFO     | ready for new job
[2026-01-28 20:25:39] 2026-01-29 04:24:51,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 20:25:39] 2026-01-29 04:24:51,964 | INFO     | **************************************
[2026-01-28 20:25:39] 2026-01-29 04:24:51,964 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 20:25:39] 2026-01-29 04:24:51,964 | INFO     | **************************************
[2026-01-28 20:25:39] 2026-01-29 04:24:51,964 | INFO     | 
[2026-01-28 20:25:39] 2026-01-29 04:24:51,966 | INFO     | architecture information:
[2026-01-28 20:25:39] 2026-01-29 04:24:51,967 | INFO     | executing command: cat /etc/os-release
[2026-01-28 20:25:39] 2026-01-29 04:24:51,979 | INFO     | cat /etc/os-release:
[2026-01-28 20:25:39] NAME="CentOS Linux"
[2026-01-28 20:25:39] VERSION="7 (Core)"
[2026-01-28 20:25:39] ID="centos"
[2026-01-28 20:25:39] ID_LIKE="rhel fedora"
[2026-01-28 20:25:39] VERSION_ID="7"
[2026-01-28 20:25:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 20:25:39] ANSI_COLOR="0;31"
[2026-01-28 20:25:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 20:25:39] HOME_URL="https://www.centos.org/"
[2026-01-28 20:25:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 20:25:39] 
[2026-01-28 20:25:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 20:25:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 20:25:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 20:25:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 20:25:39] 
[2026-01-28 20:25:39] 2026-01-29 04:24:51,979 | INFO     | **************************************
[2026-01-28 20:25:39] 2026-01-29 04:24:52,483 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-28 20:25:39] 2026-01-29 04:24:52,515 | INFO     | sufficient remaining disk space (2085071355904 B)
[2026-01-28 20:25:39] 2026-01-29 04:24:52,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 20:25:39] 2026-01-29 04:24:52,515 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 20:25:39] 2026-01-29 04:24:52,515 | INFO     | update_server=False
[2026-01-28 20:25:39] 2026-01-29 04:24:52,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 20:25:39] 2026-01-29 04:24:52,516 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-28 20:25:39] 2026-01-29 04:24:52,516 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 20:25:39] 2026-01-29 04:24:52,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 20:25:39] 2026-01-29 04:24:52,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 20:25:39] 2026-01-29 04:24:52,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 20:25:39] 2026-01-29 04:24:52,662 | INFO     | aborting loop
[2026-01-28 20:25:39] 2026-01-29 04:24:52,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 20:25:39] 2026-01-29 04:24:52,852 | INFO     | all data control threads have been joined
[2026-01-28 20:25:39] 2026-01-29 04:24:52,971 | INFO     | all payload control threads have been joined
[2026-01-28 20:25:39] 2026-01-29 04:24:53,212 | INFO     | all job control threads have been joined
[2026-01-28 20:25:39] 2026-01-29 04:24:53,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 20:25:39] 2026-01-29 04:24:53,521 | INFO     | [job] retrieve thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:53,539 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:53,667 | INFO     | [job] job monitor thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:53,858 | INFO     | [data] control thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:53,897 | INFO     | [payload] failed_post thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:53,984 | INFO     | [payload] control thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,141 | INFO     | [data] copytool_in thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,150 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,218 | INFO     | [job] control thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,236 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 20:25:39] 2026-01-29 04:24:54,347 | INFO     | [job] queue monitor thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,601 | INFO     | [payload] validate_post thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,683 | INFO     | [data] copytool_out thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,870 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:54,930 | INFO     | [job] validate thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:24:58,256 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 20:25:39] 2026-01-29 04:25:32,484 | INFO     | [monitor] cgroup control has ended
[2026-01-28 20:25:39] 2026-01-29 04:25:32,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139833415268160)>', '<ExcThread(monitor, started 139832474965760)>']
[2026-01-28 20:25:39] 2026-01-29 04:25:32,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 20:25:39] 2026-01-29 04:25:32,783 | INFO     | [monitor] control thread has ended
[2026-01-28 20:25:39] 2026-01-29 04:25:37,601 | INFO     | all workflow threads have been joined
[2026-01-28 20:25:39] 2026-01-29 04:25:37,602 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 20:25:39] 2026-01-29 04:25:37,602 | INFO     | traces error code: 0
[2026-01-28 20:25:39] 2026-01-29 04:25:37,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 20:25:39] 2026-01-29 04:25:38,060 [wrapper] ==== pilot stdout END ====
[2026-01-28 20:25:39] 2026-01-29 04:25:38,072 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 20:25:39] 2026-01-29 04:25:38,110 [wrapper] pilotpid: 1914298
[2026-01-28 20:25:39] 2026-01-29 04:25:38,157 [wrapper] Pilot exit status: 0
[2026-01-28 20:25:39] 2026-01-29 04:25:38,240 [wrapper] pandaids: 6986148724
[2026-01-28 20:25:39] 2026-01-29 04:25:38,493 [wrapper] cleanup supervisor_pilot 1914319 1914299
[2026-01-28 20:25:39] 2026-01-29 04:25:38,522 [wrapper] Test setup, not cleaning
[2026-01-28 20:25:39] 2026-01-29 04:25:38,568 [wrapper] apfmon messages muted
[2026-01-28 20:25:39] 2026-01-29 04:25:38,596 [wrapper] ==== wrapper stdout END ====
[2026-01-28 20:25:39] 2026-01-29 04:25:38,645 [wrapper] ==== wrapper stderr END ====
[2026-01-28 20:25:39]  *** Error codes and diagnostics ***
[2026-01-28 20:25:39]     "exeErrorCode": 65,
[2026-01-28 20:25:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-28 20:25:39]     "pilotErrorCode": 1305,
[2026-01-28 20:25:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-28 20:25:39]  *** Listing of results directory ***
[2026-01-28 20:25:39] total 490476
[2026-01-28 20:25:39] -rwx------. 1 boinc boinc     36322 Jan 28 09:06 runpilot2-wrapper.sh
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc      5111 Jan 28 09:08 queuedata.json
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc    584422 Jan 28 09:08 pilot3.tar.gz
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc       100 Jan 28 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 20:25:39] -rwxr-xr-x. 1 boinc boinc      7986 Jan 28 20:19 run_atlas
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc       105 Jan 28 20:19 job.xml
[2026-01-28 20:25:39] -rw-r--r--. 2 boinc boinc 498077832 Jan 28 20:19 EVNT.48317929._000032.pool.root.1
[2026-01-28 20:25:39] -rw-r--r--. 2 boinc boinc    597759 Jan 28 20:19 input.tar.gz
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc      6595 Jan 28 20:19 init_data.xml
[2026-01-28 20:25:39] -rw-r--r--. 2 boinc boinc     15845 Jan 28 20:19 start_atlas.sh
[2026-01-28 20:25:39] drwxrwx--x. 2 boinc boinc      4096 Jan 28 20:19 shared
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc         0 Jan 28 20:19 boinc_lockfile
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc      2508 Jan 28 20:19 pandaJob.out
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc   1005755 Jan 28 20:20 agis_schedconf.cvmfs.json
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc   1516246 Jan 28 20:20 agis_ddmendpoints.agis.ALL.json
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc       444 Jan 28 20:20 workernode_map.json
[2026-01-28 20:25:39] drwx------. 5 boinc boinc      4096 Jan 28 20:20 pilot3
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc       525 Jan 28 20:22 boinc_task_state.xml
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc       947 Jan 28 20:22 memory_monitor_summary.json
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc     22289 Jan 28 20:22 log.48317931._004420.job.log.tgz.1
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc        95 Jan 28 20:24 pilot_heartbeat.json
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc      7019 Jan 28 20:24 heartbeat.json
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc      8192 Jan 28 20:25 boinc_mmap_file
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc        22 Jan 28 20:25 wrapper_checkpoint.txt
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc      4547 Jan 28 20:25 pilotlog.txt
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc     90886 Jan 28 20:25 log.48317931._004420.job.log.1
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc       188 Jan 28 20:25 output.list
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc       620 Jan 28 20:25 runtime_log
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc    133120 Jan 28 20:25 result.tar.gz
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc      8635 Jan 28 20:25 runtime_log.err
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc       642 Jan 28 20:25 fa9NDm7AO58n9Rq4apOajLDm4fhM0noT9bVooX4SDmFeGKDmof1u7m.diag
[2026-01-28 20:25:39] -rw-r--r--. 1 boinc boinc     21868 Jan 28 20:25 stderr.txt
[2026-01-28 20:25:39] No HITS result produced
[2026-01-28 20:25:39]  *** Contents of shared directory: ***
[2026-01-28 20:25:39] total 487144
[2026-01-28 20:25:39] -rw-r--r--. 2 boinc boinc 498077832 Jan 28 20:19 ATLAS.root_0
[2026-01-28 20:25:39] -rw-r--r--. 2 boinc boinc    597759 Jan 28 20:19 input.tar.gz
[2026-01-28 20:25:39] -rw-r--r--. 2 boinc boinc     15845 Jan 28 20:19 start_atlas.sh
[2026-01-28 20:25:39] -rw-------. 1 boinc boinc    133120 Jan 28 20:25 result.tar.gz
20:25:40 (1907201): run_atlas exited; CPU time 23.607673
20:25:40 (1907201): called boinc_finish(0)

</stderr_txt>
]]>

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