Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:23:33 (1821296): wrapper (7.7.26015): starting
15:23:33 (1821296): wrapper: running run_atlas (--nthreads 4)
[2026-01-29 15:23:33] Arguments: --nthreads 4
[2026-01-29 15:23:33] Threads: 4
[2026-01-29 15:23:33] Checking for CVMFS
[2026-01-29 15:23:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 15:23:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 15:23:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 15:23:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 15:23:33] 2.9.2.0 1536777 1444 94152 155643 0 49 22615471 36864000 0 130560 0 819238 99.993 27703 9212 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 15:23:33] CVMFS is ok
[2026-01-29 15:23:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 15:23:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 15:23:33] Further information can be found at the LHC@home message board.
[2026-01-29 15:23:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 15:23:33] Checking for apptainer binary...
[2026-01-29 15:23:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 15:23:33] Running /usr/bin/apptainer --version
[2026-01-29 15:23:33] apptainer version 1.4.1-1.1
[2026-01-29 15:23:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 15:23:34] magicA244a
[2026-01-29 15:23:34] apptainer works
[2026-01-29 15:23:34] Set ATHENA_PROC_NUMBER=4
[2026-01-29 15:23:34] Set ATHENA_CORE_NUMBER=4
[2026-01-29 15:23:34] Starting ATLAS job with PandaID=6987907845
[2026-01-29 15:23:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 16:33:03]  *** The last 200 lines of the pilot log: ***
[2026-01-29 16:33:03] 2026-01-29 15:32:31,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 16:33:03] 2026-01-29 15:32:31,998 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 16:33:03] 2026-01-29 15:32:31,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 16:33:03] 2026-01-29 15:32:31,998 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 16:33:03] 2026-01-29 15:32:31,998 | INFO     | job 6987907845 has completed (purged errors)
[2026-01-29 16:33:03] 2026-01-29 15:32:31,998 | INFO     | overall cleanup function is called
[2026-01-29 16:33:03] 2026-01-29 15:32:33,005 | INFO     | --- collectZombieJob: --- 10, [1829923]
[2026-01-29 16:33:03] 2026-01-29 15:32:33,005 | INFO     | zombie collector waiting for pid 1829923
[2026-01-29 16:33:03] 2026-01-29 15:32:33,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 16:33:03] 2026-01-29 15:32:33,005 | INFO     | collected zombie processes
[2026-01-29 16:33:03] 2026-01-29 15:32:33,005 | INFO     | will attempt to kill all subprocesses of pid=1829923
[2026-01-29 16:33:03] 2026-01-29 15:32:33,048 | INFO     | process IDs to be killed: [1829923] (in reverse order)
[2026-01-29 16:33:03] 2026-01-29 15:32:33,076 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 16:33:03] 2026-01-29 15:32:33,076 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 16:33:03] 2026-01-29 15:32:33,077 | INFO     | did not find any defunct processes belonging to 1829923
[2026-01-29 16:33:03] 2026-01-29 15:32:33,078 | INFO     | did not find any defunct processes belonging to 1829923
[2026-01-29 16:33:03] 2026-01-29 15:32:33,078 | INFO     | ready for new job
[2026-01-29 16:33:03] 2026-01-29 15:32:33,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 16:33:03] 2026-01-29 15:32:33,079 | INFO     | **************************************
[2026-01-29 16:33:03] 2026-01-29 15:32:33,079 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 16:33:03] 2026-01-29 15:32:33,079 | INFO     | **************************************
[2026-01-29 16:33:03] 2026-01-29 15:32:33,079 | INFO     | 
[2026-01-29 16:33:03] 2026-01-29 15:32:33,080 | INFO     | architecture information:
[2026-01-29 16:33:03] 2026-01-29 15:32:33,080 | INFO     | executing command: cat /etc/os-release
[2026-01-29 16:33:03] 2026-01-29 15:32:33,089 | INFO     | cat /etc/os-release:
[2026-01-29 16:33:03] NAME="CentOS Linux"
[2026-01-29 16:33:03] VERSION="7 (Core)"
[2026-01-29 16:33:03] ID="centos"
[2026-01-29 16:33:03] ID_LIKE="rhel fedora"
[2026-01-29 16:33:03] VERSION_ID="7"
[2026-01-29 16:33:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 16:33:03] ANSI_COLOR="0;31"
[2026-01-29 16:33:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 16:33:03] HOME_URL="https://www.centos.org/"
[2026-01-29 16:33:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 16:33:03] 
[2026-01-29 16:33:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 16:33:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 16:33:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 16:33:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 16:33:03] 
[2026-01-29 16:33:03] 2026-01-29 15:32:33,089 | INFO     | **************************************
[2026-01-29 16:33:03] 2026-01-29 15:32:33,593 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 16:33:03] 2026-01-29 15:32:33,606 | INFO     | sufficient remaining disk space (333087506432 B)
[2026-01-29 16:33:03] 2026-01-29 15:32:33,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 16:33:03] 2026-01-29 15:32:33,606 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 16:33:03] 2026-01-29 15:32:33,606 | INFO     | update_server=False
[2026-01-29 16:33:03] 2026-01-29 15:32:33,607 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 16:33:03] 2026-01-29 15:32:33,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 16:33:03] 2026-01-29 15:32:33,607 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 16:33:03] 2026-01-29 15:32:34,414 | INFO     | all payload control threads have been joined
[2026-01-29 16:33:03] 2026-01-29 15:32:34,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 16:33:03] 2026-01-29 15:32:34,501 | INFO     | aborting loop
[2026-01-29 16:33:03] 2026-01-29 15:32:34,604 | INFO     | all data control threads have been joined
[2026-01-29 16:33:03] 2026-01-29 15:32:34,612 | INFO     | [job] retrieve thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:34,612 | INFO     | [job] queue monitor thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:34,668 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:34,705 | INFO     | all job control threads have been joined
[2026-01-29 16:33:03] 2026-01-29 15:32:34,773 | INFO     | [data] copytool_in thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:34,965 | INFO     | [payload] validate_post thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,416 | INFO     | [payload] control thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,506 | INFO     | [job] job monitor thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,610 | INFO     | [data] control thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,613 | INFO     | [data] copytool_out thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,710 | INFO     | [job] control thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,910 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:35,938 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:36,040 | INFO     | [job] validate thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:36,052 | INFO     | [payload] failed_post thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:36,074 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:37,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 16:33:03] 2026-01-29 15:32:41,007 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 16:33:03] 2026-01-29 15:32:49,633 | INFO     | [monitor] cgroup control has ended
[2026-01-29 16:33:03] 2026-01-29 15:32:50,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140341757101888)>', '<ExcThread(monitor, started 140341101438720)>']
[2026-01-29 16:33:03] 2026-01-29 15:32:55,537 | INFO     | all workflow threads have been joined
[2026-01-29 16:33:03] 2026-01-29 15:32:55,537 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 16:33:03] 2026-01-29 15:32:55,538 | INFO     | traces error code: 0
[2026-01-29 16:33:03] 2026-01-29 15:32:55,538 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 16:33:03] 2026-01-29 15:33:03,337 | INFO     | PID=1825404 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 16:33:03] 2026-01-29 15:33:03,338 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 16:33:03] 2026-01-29 15:33:03,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 16:33:03] 2026-01-29 15:33:03,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 16:33:03] 2026-01-29 15:33:03,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 16:33:03] 2026-01-29 15:33:03,338 | INFO     | [monitor] control thread has ended
[2026-01-29 16:33:03] 2026-01-29 15:33:03,388 [wrapper] ==== pilot stdout END ====
[2026-01-29 16:33:03] 2026-01-29 15:33:03,390 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 16:33:03] 2026-01-29 15:33:03,393 [wrapper] pilotpid: 1825404
[2026-01-29 16:33:03] 2026-01-29 15:33:03,395 [wrapper] Pilot exit status: 0
[2026-01-29 16:33:03] 2026-01-29 15:33:03,403 [wrapper] pandaids: 6987907845
[2026-01-29 16:33:03] 2026-01-29 15:33:03,421 [wrapper] cleanup supervisor_pilot 1835052 1825405
[2026-01-29 16:33:03] 2026-01-29 15:33:03,423 [wrapper] Test setup, not cleaning
[2026-01-29 16:33:03] 2026-01-29 15:33:03,426 [wrapper] apfmon messages muted
[2026-01-29 16:33:03] 2026-01-29 15:33:03,428 [wrapper] ==== wrapper stdout END ====
[2026-01-29 16:33:03] 2026-01-29 15:33:03,431 [wrapper] ==== wrapper stderr END ====
[2026-01-29 16:33:03]  *** Error codes and diagnostics ***
[2026-01-29 16:33:03]     "exeErrorCode": 0,
[2026-01-29 16:33:03]     "exeErrorDiag": "",
[2026-01-29 16:33:03]     "pilotErrorCode": 0,
[2026-01-29 16:33:03]     "pilotErrorDiag": "",
[2026-01-29 16:33:03]  *** Listing of results directory ***
[2026-01-29 16:33:03] total 666416
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc    584422 Jan 28 23:30 pilot3.tar.gz
[2026-01-29 16:33:03] -rwx------ 1 boinc boinc     36322 Jan 28 23:32 runpilot2-wrapper.sh
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc      5111 Jan 28 23:33 queuedata.json
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc       100 Jan 29 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 16:33:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 15:23 run_atlas
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc       105 Jan 29 15:23 job.xml
[2026-01-29 16:33:03] -rw-r--r-- 2 boinc boinc 493229828 Jan 29 15:23 EVNT.48317949._000078.pool.root.1
[2026-01-29 16:33:03] drwxrwx--x 2 boinc boinc      4096 Jan 29 15:23 shared
[2026-01-29 16:33:03] -rw-r--r-- 2 boinc boinc    597763 Jan 29 15:23 input.tar.gz
[2026-01-29 16:33:03] -rw-r--r-- 2 boinc boinc     15845 Jan 29 15:23 start_atlas.sh
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc         0 Jan 29 15:23 boinc_setup_complete
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc      6438 Jan 29 15:23 init_data.xml
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc         0 Jan 29 15:23 boinc_lockfile
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc      2520 Jan 29 15:23 pandaJob.out
[2026-01-29 16:33:03] -rw------- 1 boinc boinc   1010005 Jan 29 15:23 agis_schedconf.cvmfs.json
[2026-01-29 16:33:03] -rw------- 1 boinc boinc   1516246 Jan 29 15:23 agis_ddmendpoints.agis.ALL.json
[2026-01-29 16:33:03] -rw------- 1 boinc boinc       417 Jan 29 15:23 workernode_map.json
[2026-01-29 16:33:03] drwx------ 5 boinc boinc      4096 Jan 29 15:23 pilot3
[2026-01-29 16:33:03] -rw------- 1 boinc boinc 183541664 Jan 29 16:32 HITS.48317952._003883.pool.root.1
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc       530 Jan 29 16:32 boinc_task_state.xml
[2026-01-29 16:33:03] -rw------- 1 boinc boinc      1021 Jan 29 16:32 memory_monitor_summary.json
[2026-01-29 16:33:03] -rw------- 1 boinc boinc    243591 Jan 29 16:32 log.48317952._003883.job.log.tgz.1
[2026-01-29 16:33:03] -rw------- 1 boinc boinc      6302 Jan 29 16:32 heartbeat.json
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc        27 Jan 29 16:32 wrapper_checkpoint.txt
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc      8192 Jan 29 16:32 boinc_mmap_file
[2026-01-29 16:33:03] -rw------- 1 boinc boinc        95 Jan 29 16:33 pilot_heartbeat.json
[2026-01-29 16:33:03] -rw------- 1 boinc boinc       747 Jan 29 16:33 pilotlog.txt
[2026-01-29 16:33:03] -rw------- 1 boinc boinc    613966 Jan 29 16:33 log.48317952._003883.job.log.1
[2026-01-29 16:33:03] -rw------- 1 boinc boinc       357 Jan 29 16:33 output.list
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc       620 Jan 29 16:33 runtime_log
[2026-01-29 16:33:03] -rw------- 1 boinc boinc    870400 Jan 29 16:33 result.tar.gz
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc      8916 Jan 29 16:33 runtime_log.err
[2026-01-29 16:33:03] -rw------- 1 boinc boinc       661 Jan 29 16:33 1nVMDmhGT58n9Rq4apOajLDm4fhM0noT9bVooX4SDmNJHKDmWsq9Qm.diag
[2026-01-29 16:33:03] -rw-r--r-- 1 boinc boinc     11211 Jan 29 16:33 stderr.txt
[2026-01-29 16:33:03] HITS file was successfully produced:
[2026-01-29 16:33:03] -rw------- 1 boinc boinc 183541664 Jan 29 16:32 shared/HITS.pool.root.1
[2026-01-29 16:33:03]  *** Contents of shared directory: ***
[2026-01-29 16:33:03] total 662372
[2026-01-29 16:33:03] -rw-r--r-- 2 boinc boinc 493229828 Jan 29 15:23 ATLAS.root_0
[2026-01-29 16:33:03] -rw-r--r-- 2 boinc boinc    597763 Jan 29 15:23 input.tar.gz
[2026-01-29 16:33:03] -rw-r--r-- 2 boinc boinc     15845 Jan 29 15:23 start_atlas.sh
[2026-01-29 16:33:03] -rw------- 1 boinc boinc 183541664 Jan 29 16:32 HITS.pool.root.1
[2026-01-29 16:33:03] -rw------- 1 boinc boinc    870400 Jan 29 16:33 result.tar.gz
16:33:05 (1821296): run_atlas exited; CPU time 15526.777005
16:33:05 (1821296): called boinc_finish(0)

</stderr_txt>
]]>

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