Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:58:24 (2850192): wrapper (7.7.26015): starting
05:58:24 (2850192): wrapper: running run_atlas (--nthreads 4)
[2026-01-29 05:58:24] Arguments: --nthreads 4
[2026-01-29 05:58:24] Threads: 4
[2026-01-29 05:58:24] Checking for CVMFS
[2026-01-29 05:58:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 05:58:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 05:58:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 05:58:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 05:58:25] 2.9.2.0 2658988 927 78360 155626 0 188 19524656 36864000 0 130560 0 543875 99.999 4247 2608 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 05:58:25] CVMFS is ok
[2026-01-29 05:58:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 05:58:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 05:58:25] Further information can be found at the LHC@home message board.
[2026-01-29 05:58:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 05:58:25] Checking for apptainer binary...
[2026-01-29 05:58:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 05:58:25] Running /usr/bin/apptainer --version
[2026-01-29 05:58:25] apptainer version 1.4.1-1.1
[2026-01-29 05:58:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 05:58:25] thA317a
[2026-01-29 05:58:25] apptainer works
[2026-01-29 05:58:25] Set ATHENA_PROC_NUMBER=4
[2026-01-29 05:58:25] Set ATHENA_CORE_NUMBER=4
[2026-01-29 05:58:25] Starting ATLAS job with PandaID=6986149891
[2026-01-29 05:58:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 07:03:44]  *** The last 200 lines of the pilot log: ***
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | job 6986149891 has completed (purged errors)
[2026-01-29 07:03:44] 2026-01-29 06:02:58,265 | INFO     | overall cleanup function is called
[2026-01-29 07:03:44] 2026-01-29 06:02:59,271 | INFO     | --- collectZombieJob: --- 10, [2858789]
[2026-01-29 07:03:44] 2026-01-29 06:02:59,272 | INFO     | zombie collector waiting for pid 2858789
[2026-01-29 07:03:44] 2026-01-29 06:02:59,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 07:03:44] 2026-01-29 06:02:59,272 | INFO     | collected zombie processes
[2026-01-29 07:03:44] 2026-01-29 06:02:59,272 | INFO     | will attempt to kill all subprocesses of pid=2858789
[2026-01-29 07:03:44] 2026-01-29 06:02:59,320 | INFO     | process IDs to be killed: [2858789] (in reverse order)
[2026-01-29 07:03:44] 2026-01-29 06:02:59,345 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 07:03:44] 2026-01-29 06:02:59,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 07:03:44] 2026-01-29 06:02:59,347 | INFO     | did not find any defunct processes belonging to 2858789
[2026-01-29 07:03:44] 2026-01-29 06:02:59,348 | INFO     | did not find any defunct processes belonging to 2858789
[2026-01-29 07:03:44] 2026-01-29 06:02:59,348 | INFO     | ready for new job
[2026-01-29 07:03:44] 2026-01-29 06:02:59,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 07:03:44] 2026-01-29 06:02:59,349 | INFO     | **************************************
[2026-01-29 07:03:44] 2026-01-29 06:02:59,349 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 07:03:44] 2026-01-29 06:02:59,349 | INFO     | **************************************
[2026-01-29 07:03:44] 2026-01-29 06:02:59,349 | INFO     | 
[2026-01-29 07:03:44] 2026-01-29 06:02:59,349 | INFO     | architecture information:
[2026-01-29 07:03:44] 2026-01-29 06:02:59,349 | INFO     | executing command: cat /etc/os-release
[2026-01-29 07:03:44] 2026-01-29 06:02:59,358 | INFO     | cat /etc/os-release:
[2026-01-29 07:03:44] NAME="CentOS Linux"
[2026-01-29 07:03:44] VERSION="7 (Core)"
[2026-01-29 07:03:44] ID="centos"
[2026-01-29 07:03:44] ID_LIKE="rhel fedora"
[2026-01-29 07:03:44] VERSION_ID="7"
[2026-01-29 07:03:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 07:03:44] ANSI_COLOR="0;31"
[2026-01-29 07:03:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 07:03:44] HOME_URL="https://www.centos.org/"
[2026-01-29 07:03:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 07:03:44] 
[2026-01-29 07:03:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 07:03:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 07:03:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 07:03:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 07:03:44] 
[2026-01-29 07:03:44] 2026-01-29 06:02:59,359 | INFO     | **************************************
[2026-01-29 07:03:44] 2026-01-29 06:02:59,862 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | INFO     | sufficient remaining disk space (236860735488 B)
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | INFO     | update_server=False
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 07:03:44] 2026-01-29 06:02:59,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 07:03:44] 2026-01-29 06:02:59,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 07:03:44] 2026-01-29 06:02:59,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 07:03:44] 2026-01-29 06:02:59,890 | INFO     | aborting loop
[2026-01-29 07:03:44] 2026-01-29 06:03:00,293 | INFO     | all job control threads have been joined
[2026-01-29 07:03:44] 2026-01-29 06:03:00,870 | INFO     | all data control threads have been joined
[2026-01-29 07:03:44] 2026-01-29 06:03:00,879 | INFO     | [job] retrieve thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:00,879 | INFO     | [job] queue monitor thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:00,896 | INFO     | [job] job monitor thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:00,924 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:01,006 | INFO     | [data] copytool_in thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:01,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 07:03:44] 2026-01-29 06:03:01,040 | INFO     | all payload control threads have been joined
[2026-01-29 07:03:44] 2026-01-29 06:03:01,175 | INFO     | [payload] validate_post thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:01,241 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:01,296 | INFO     | [job] control thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:01,682 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:01,876 | INFO     | [data] control thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:02,046 | INFO     | [payload] control thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:02,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 07:03:44] 2026-01-29 06:03:02,285 | INFO     | [payload] failed_post thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:02,302 | INFO     | [job] validate thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:02,358 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:03,022 | INFO     | [data] copytool_out thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:06,105 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 07:03:44] 2026-01-29 06:03:39,000 | INFO     | [monitor] cgroup control has ended
[2026-01-29 07:03:44] 2026-01-29 06:03:39,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700708525888)>', '<ExcThread(monitor, started 139700362790656)>']
[2026-01-29 07:03:44] 2026-01-29 06:03:40,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 07:03:44] 2026-01-29 06:03:40,078 | INFO     | [monitor] control thread has ended
[2026-01-29 07:03:44] 2026-01-29 06:03:44,385 | INFO     | all workflow threads have been joined
[2026-01-29 07:03:44] 2026-01-29 06:03:44,385 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 07:03:44] 2026-01-29 06:03:44,385 | INFO     | traces error code: 0
[2026-01-29 07:03:44] 2026-01-29 06:03:44,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 07:03:44] 2026-01-29 06:03:44,429 [wrapper] ==== pilot stdout END ====
[2026-01-29 07:03:44] 2026-01-29 06:03:44,432 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 07:03:44] 2026-01-29 06:03:44,434 [wrapper] pilotpid: 2854286
[2026-01-29 07:03:44] 2026-01-29 06:03:44,436 [wrapper] Pilot exit status: 0
[2026-01-29 07:03:44] 2026-01-29 06:03:44,444 [wrapper] pandaids: 6986149891
[2026-01-29 07:03:44] 2026-01-29 06:03:44,460 [wrapper] cleanup supervisor_pilot 2863823 2854287
[2026-01-29 07:03:44] 2026-01-29 06:03:44,463 [wrapper] Test setup, not cleaning
[2026-01-29 07:03:44] 2026-01-29 06:03:44,465 [wrapper] apfmon messages muted
[2026-01-29 07:03:44] 2026-01-29 06:03:44,467 [wrapper] ==== wrapper stdout END ====
[2026-01-29 07:03:44] 2026-01-29 06:03:44,470 [wrapper] ==== wrapper stderr END ====
[2026-01-29 07:03:44]  *** Error codes and diagnostics ***
[2026-01-29 07:03:44]     "exeErrorCode": 0,
[2026-01-29 07:03:44]     "exeErrorDiag": "",
[2026-01-29 07:03:44]     "pilotErrorCode": 0,
[2026-01-29 07:03:44]     "pilotErrorDiag": "",
[2026-01-29 07:03:44]  *** Listing of results directory ***
[2026-01-29 07:03:44] total 673284
[2026-01-29 07:03:44] -rwx------ 1 boinc boinc     36322 Jan 28 18:06 runpilot2-wrapper.sh
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc      5111 Jan 28 18:08 queuedata.json
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc    584422 Jan 28 18:08 pilot3.tar.gz
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc       100 Jan 29 05:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 07:03:44] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 05:58 run_atlas
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc       105 Jan 29 05:58 job.xml
[2026-01-29 07:03:44] -rw-r--r-- 2 boinc boinc 498593093 Jan 29 05:58 EVNT.48317929._000040.pool.root.1
[2026-01-29 07:03:44] -rw-r--r-- 2 boinc boinc    597754 Jan 29 05:58 input.tar.gz
[2026-01-29 07:03:44] -rw-r--r-- 2 boinc boinc     15845 Jan 29 05:58 start_atlas.sh
[2026-01-29 07:03:44] drwxrwx--x 2 boinc boinc      4096 Jan 29 05:58 shared
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc         0 Jan 29 05:58 boinc_setup_complete
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc      6439 Jan 29 05:58 init_data.xml
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc         0 Jan 29 05:58 boinc_lockfile
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc      2507 Jan 29 05:58 pandaJob.out
[2026-01-29 07:03:44] -rw------- 1 boinc boinc   1005755 Jan 29 05:58 agis_schedconf.cvmfs.json
[2026-01-29 07:03:44] -rw------- 1 boinc boinc   1516246 Jan 29 05:58 agis_ddmendpoints.agis.ALL.json
[2026-01-29 07:03:44] -rw------- 1 boinc boinc       417 Jan 29 05:58 workernode_map.json
[2026-01-29 07:03:44] drwx------ 5 boinc boinc      4096 Jan 29 05:58 pilot3
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc       530 Jan 29 07:02 boinc_task_state.xml
[2026-01-29 07:03:44] -rw------- 1 boinc boinc 185253935 Jan 29 07:02 HITS.48317931._004791.pool.root.1
[2026-01-29 07:03:44] -rw------- 1 boinc boinc      1016 Jan 29 07:02 memory_monitor_summary.json
[2026-01-29 07:03:44] -rw------- 1 boinc boinc    247829 Jan 29 07:02 log.48317931._004791.job.log.tgz.1
[2026-01-29 07:03:44] -rw------- 1 boinc boinc        95 Jan 29 07:02 pilot_heartbeat.json
[2026-01-29 07:03:44] -rw------- 1 boinc boinc      6287 Jan 29 07:02 heartbeat.json
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc        27 Jan 29 07:03 wrapper_checkpoint.txt
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc      8192 Jan 29 07:03 boinc_mmap_file
[2026-01-29 07:03:44] -rw------- 1 boinc boinc      4552 Jan 29 07:03 pilotlog.txt
[2026-01-29 07:03:44] -rw------- 1 boinc boinc    579725 Jan 29 07:03 log.48317931._004791.job.log.1
[2026-01-29 07:03:44] -rw------- 1 boinc boinc       357 Jan 29 07:03 output.list
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc       620 Jan 29 07:03 runtime_log
[2026-01-29 07:03:44] -rw------- 1 boinc boinc    849920 Jan 29 07:03 result.tar.gz
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc      8901 Jan 29 07:03 runtime_log.err
[2026-01-29 07:03:44] -rw------- 1 boinc boinc       658 Jan 29 07:03 NYYKDmHBO58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUjGKDmU03jJo.diag
[2026-01-29 07:03:44] -rw-r--r-- 1 boinc boinc     12747 Jan 29 07:03 stderr.txt
[2026-01-29 07:03:44] HITS file was successfully produced:
[2026-01-29 07:03:44] -rw------- 1 boinc boinc 185253935 Jan 29 07:02 shared/HITS.pool.root.1
[2026-01-29 07:03:44]  *** Contents of shared directory: ***
[2026-01-29 07:03:44] total 669264
[2026-01-29 07:03:44] -rw-r--r-- 2 boinc boinc 498593093 Jan 29 05:58 ATLAS.root_0
[2026-01-29 07:03:44] -rw-r--r-- 2 boinc boinc    597754 Jan 29 05:58 input.tar.gz
[2026-01-29 07:03:44] -rw-r--r-- 2 boinc boinc     15845 Jan 29 05:58 start_atlas.sh
[2026-01-29 07:03:44] -rw------- 1 boinc boinc 185253935 Jan 29 07:02 HITS.pool.root.1
[2026-01-29 07:03:44] -rw------- 1 boinc boinc    849920 Jan 29 07:03 result.tar.gz
07:03:46 (2850192): run_atlas exited; CPU time 14432.053687
07:03:46 (2850192): called boinc_finish(0)

</stderr_txt>
]]>

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