Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:48:12 (3633): wrapper (7.7.26015): starting
16:48:12 (3633): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 16:48:12] Arguments: --nthreads 8
[2026-01-28 16:48:12] Threads: 8
[2026-01-28 16:48:12] Checking for CVMFS
[2026-01-28 16:48:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 16:48:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 16:48:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 16:48:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 16:48:13] 2.11.2.0 10816 208935 141176 155626 2 188 14356231 18432000 917 130560 0 137122490 99.981 7935779 29217 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-28 16:48:13] CVMFS is ok
[2026-01-28 16:48:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 16:48:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 16:48:13] Further information can be found at the LHC@home message board.
[2026-01-28 16:48:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 16:48:13] Checking for apptainer binary...
[2026-01-28 16:48:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 16:48:13] Running /usr/bin/apptainer --version
[2026-01-28 16:48:13] apptainer version 1.3.2-1.el7
[2026-01-28 16:48:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 16:48:13] c-206-11.aglt2.org
[2026-01-28 16:48:13] apptainer works
[2026-01-28 16:48:13] Set ATHENA_PROC_NUMBER=8
[2026-01-28 16:48:13] Set ATHENA_CORE_NUMBER=8
[2026-01-28 16:48:13] Starting ATLAS job with PandaID=6986150111
[2026-01-28 16:48:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:11:41 (5457): wrapper (7.7.26015): starting
20:11:41 (5457): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 20:11:41] Arguments: --nthreads 8
[2026-01-28 20:11:41] Threads: 8
[2026-01-28 20:11:41] This job has been restarted, cleaning up previous attempt
[2026-01-28 20:11:41] Checking for CVMFS
[2026-01-28 20:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 20:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 20:11:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 20:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 20:11:42] 2.11.2.0 10816 209138 139592 155626 3 188 14369729 18432001 1 130560 0 137329286 99.981 7935808 29217 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-28 20:11:42] CVMFS is ok
[2026-01-28 20:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 20:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 20:11:42] Further information can be found at the LHC@home message board.
[2026-01-28 20:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 20:11:42] Checking for apptainer binary...
[2026-01-28 20:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 20:11:42] Running /usr/bin/apptainer --version
[2026-01-28 20:11:42] apptainer version 1.3.2-1.el7
[2026-01-28 20:11:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 20:11:43] c-206-11.aglt2.org
[2026-01-28 20:11:43] apptainer works
[2026-01-28 20:11:43] Set ATHENA_PROC_NUMBER=8
[2026-01-28 20:11:43] Set ATHENA_CORE_NUMBER=8
[2026-01-28 20:11:43] Starting ATLAS job with PandaID=6986150111
[2026-01-28 20:11:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 23:28:22]  *** The last 200 lines of the pilot log: ***
[2026-01-28 23:28:22] 2026-01-29 04:27:45,101 | INFO     | total number of processed events: 400 (read)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,107 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6986150111/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,108 | INFO     | extracted standard info from prmon json
[2026-01-28 23:28:22] 2026-01-29 04:27:45,108 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 23:28:22] 2026-01-29 04:27:45,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 23:28:22] 2026-01-29 04:27:45,109 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 23:28:22] 2026-01-29 04:27:45,109 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 23:28:22] 2026-01-29 04:27:45,115 | INFO     | fitting pss+swap vs Time
[2026-01-28 23:28:22] 2026-01-29 04:27:45,115 | INFO     | sum of square deviations: 2229146912.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,117 | INFO     | sum of deviations: 23414221333.999992
[2026-01-28 23:28:22] 2026-01-29 04:27:45,117 | INFO     | mean x: 1769654994.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,118 | INFO     | mean y: 2552714.839378238
[2026-01-28 23:28:22] 2026-01-29 04:27:45,118 | INFO     | intersect: -18585317600.6073
[2026-01-28 23:28:22] 2026-01-29 04:27:45,118 | INFO     | chi2: 2.1178110980098284
[2026-01-28 23:28:22] 2026-01-29 04:27:45,119 | INFO     | sum of square deviations: 2060343747.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,121 | INFO     | sum of deviations: 36128648760.5
[2026-01-28 23:28:22] 2026-01-29 04:27:45,121 | INFO     | mean x: 1769654841.5
[2026-01-28 23:28:22] 2026-01-29 04:27:45,121 | INFO     | mean y: 2563942.962765957
[2026-01-28 23:28:22] 2026-01-29 04:27:45,122 | INFO     | intersect: -31028781330.83722
[2026-01-28 23:28:22] 2026-01-29 04:27:45,122 | INFO     | chi2: 1.2956679510015106
[2026-01-28 23:28:22] 2026-01-29 04:27:45,122 | INFO     | current chi2=1.2956679510015106 (change=38.82041924234464 %)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,123 | INFO     | sum of square deviations: 1900284932.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,124 | INFO     | sum of deviations: 35026448331.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,125 | INFO     | mean x: 1769654689.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,125 | INFO     | mean y: 2562892.573770492
[2026-01-28 23:28:22] 2026-01-29 04:27:45,125 | INFO     | intersect: -32616081545.51746
[2026-01-28 23:28:22] 2026-01-29 04:27:45,126 | INFO     | chi2: 1.295767992682164
[2026-01-28 23:28:22] 2026-01-29 04:27:45,126 | INFO     | current chi2=1.295767992682164 (change=-0.007721243747368536 %)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,126 | INFO     | right removable region: 182
[2026-01-28 23:28:22] 2026-01-29 04:27:45,126 | INFO     | sum of square deviations: 2060343747.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,128 | INFO     | sum of deviations: -5812870560.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,128 | INFO     | mean x: 1769655146.5
[2026-01-28 23:28:22] 2026-01-29 04:27:45,129 | INFO     | mean y: 2578843.5
[2026-01-28 23:28:22] 2026-01-29 04:27:45,129 | INFO     | intersect: 4995326445.651621
[2026-01-28 23:28:22] 2026-01-29 04:27:45,129 | INFO     | chi2: 0.8444988227585486
[2026-01-28 23:28:22] 2026-01-29 04:27:45,130 | INFO     | current chi2=0.8444988227585486 (change=60.123977839565114 %)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,130 | INFO     | sum of square deviations: 1900284932.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,132 | INFO     | sum of deviations: -7585618155.999998
[2026-01-28 23:28:22] 2026-01-29 04:27:45,132 | INFO     | mean x: 1769655299.0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,132 | INFO     | mean y: 2580526.355191257
[2026-01-28 23:28:22] 2026-01-29 04:27:45,133 | INFO     | intersect: 7066747136.268618
[2026-01-28 23:28:22] 2026-01-29 04:27:45,133 | INFO     | chi2: 0.8421009860042544
[2026-01-28 23:28:22] 2026-01-29 04:27:45,134 | INFO     | current chi2=0.8421009860042544 (change=0.2839360683134708 %)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,134 | INFO     | left removable region: 20
[2026-01-28 23:28:22] 2026-01-29 04:27:45,134 | INFO     | sum of square deviations: 1318277740.5
[2026-01-28 23:28:22] 2026-01-29 04:27:45,136 | INFO     | sum of deviations: 3181565257.500001
[2026-01-28 23:28:22] 2026-01-29 04:27:45,136 | INFO     | mean x: 1769655268.5
[2026-01-28 23:28:22] 2026-01-29 04:27:45,136 | INFO     | mean y: 2594921.339506173
[2026-01-28 23:28:22] 2026-01-29 04:27:45,137 | INFO     | intersect: -4268336421.1528354
[2026-01-28 23:28:22] 2026-01-29 04:27:45,137 | INFO     | chi2: 0.00033487579821597573
[2026-01-28 23:28:22] 2026-01-29 04:27:45,137 | INFO     | current memory leak: 2.41 B/s (using 162 data points, chi2=0.00)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,138 | INFO     | could have reported an average CPU frequency of 2128 MHz (10 samples)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,139 | INFO     | ..............................
[2026-01-28 23:28:22] 2026-01-29 04:27:45,139 | INFO     | . Timing measurements:
[2026-01-28 23:28:22] 2026-01-29 04:27:45,139 | INFO     | . get job = 0 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,139 | INFO     | . initial setup = 2 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,139 | INFO     | . payload setup = 5 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,140 | INFO     | . stage-in = 0 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,140 | INFO     | . payload execution = 11724 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,140 | INFO     | . stage-out = 2 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,140 | INFO     | . log creation = 0 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,141 | INFO     | ..............................
[2026-01-28 23:28:22] 2026-01-29 04:27:45,206 | INFO     | time since job start (11749s) is within the limit (349056.0s)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,286 | INFO     | 
[2026-01-28 23:28:22] 2026-01-29 04:27:45,286 | INFO     | job summary report
[2026-01-28 23:28:22] 2026-01-29 04:27:45,286 | INFO     | --------------------------------------------------
[2026-01-28 23:28:22] 2026-01-29 04:27:45,287 | INFO     | PanDA job id: 6986150111
[2026-01-28 23:28:22] 2026-01-29 04:27:45,287 | INFO     | task id: 48317931
[2026-01-28 23:28:22] 2026-01-29 04:27:45,287 | INFO     | errors: (none)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,288 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 23:28:22] 2026-01-29 04:27:45,288 | INFO     | pilot state: finished 
[2026-01-28 23:28:22] 2026-01-29 04:27:45,288 | INFO     | transexitcode: 0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,288 | INFO     | exeerrorcode: 0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,289 | INFO     | exeerrordiag: 
[2026-01-28 23:28:22] 2026-01-29 04:27:45,289 | INFO     | exitcode: 0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,289 | INFO     | exitmsg: OK
[2026-01-28 23:28:22] 2026-01-29 04:27:45,290 | INFO     | cpuconsumptiontime: 89644 s
[2026-01-28 23:28:22] 2026-01-29 04:27:45,290 | INFO     | nevents: 400
[2026-01-28 23:28:22] 2026-01-29 04:27:45,290 | INFO     | neventsw: 0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,290 | INFO     | pid: 24618
[2026-01-28 23:28:22] 2026-01-29 04:27:45,291 | INFO     | pgrp: 24618
[2026-01-28 23:28:22] 2026-01-29 04:27:45,291 | INFO     | corecount: 8
[2026-01-28 23:28:22] 2026-01-29 04:27:45,291 | INFO     | event service: False
[2026-01-28 23:28:22] 2026-01-29 04:27:45,291 | INFO     | sizes: {0: 2283971, 1: 2284205, 11: 2284205, 11734: 2313687, 11737: 2322879}
[2026-01-28 23:28:22] 2026-01-29 04:27:45,292 | INFO     | --------------------------------------------------
[2026-01-28 23:28:22] 2026-01-29 04:27:45,292 | INFO     | 
[2026-01-28 23:28:22] 2026-01-29 04:27:45,292 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-28 23:28:22] 2026-01-29 04:27:45,320 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,321 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,321 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,321 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,323 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,324 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 23:28:22] 2026-01-29 04:27:45,324 | INFO     | job 6986150111 has completed (purged errors)
[2026-01-28 23:28:22] 2026-01-29 04:27:45,324 | INFO     | overall cleanup function is called
[2026-01-28 23:28:22] 2026-01-29 04:27:45,434 | INFO     | number of running child processes to parent process 24618: 1
[2026-01-28 23:28:22] 2026-01-29 04:27:45,434 | INFO     | maximum number of monitored processes: 6
[2026-01-28 23:28:22] 2026-01-29 04:27:45,435 | INFO     | aborting job monitoring since job object (job id=6986150111) has expired
[2026-01-28 23:28:22] 2026-01-29 04:27:46,333 | INFO     | --- collectZombieJob: --- 10, [24618]
[2026-01-28 23:28:22] 2026-01-29 04:27:46,333 | INFO     | zombie collector waiting for pid 24618
[2026-01-28 23:28:22] 2026-01-29 04:27:46,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 23:28:22] 2026-01-29 04:27:46,333 | INFO     | collected zombie processes
[2026-01-28 23:28:22] 2026-01-29 04:27:46,334 | INFO     | will attempt to kill all subprocesses of pid=24618
[2026-01-28 23:28:22] 2026-01-29 04:27:46,464 | INFO     | process IDs to be killed: [24618] (in reverse order)
[2026-01-28 23:28:22] 2026-01-29 04:27:46,515 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 23:28:22] 2026-01-29 04:27:46,515 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 23:28:22] 2026-01-29 04:27:46,521 | INFO     | did not find any defunct processes belonging to 24618
[2026-01-28 23:28:22] 2026-01-29 04:27:46,523 | INFO     | did not find any defunct processes belonging to 24618
[2026-01-28 23:28:22] 2026-01-29 04:27:46,523 | INFO     | ready for new job
[2026-01-28 23:28:22] 2026-01-29 04:27:46,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 23:28:22] 2026-01-29 04:27:46,525 | INFO     | **************************************
[2026-01-28 23:28:22] 2026-01-29 04:27:46,525 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 23:28:22] 2026-01-29 04:27:46,525 | INFO     | **************************************
[2026-01-28 23:28:22] 2026-01-29 04:27:46,525 | INFO     | 
[2026-01-28 23:28:22] 2026-01-29 04:27:46,526 | INFO     | architecture information:
[2026-01-28 23:28:22] 2026-01-29 04:27:46,526 | INFO     | executing command: cat /etc/os-release
[2026-01-28 23:28:22] 2026-01-29 04:27:46,537 | INFO     | cat /etc/os-release:
[2026-01-28 23:28:22] NAME="CentOS Linux"
[2026-01-28 23:28:22] VERSION="7 (Core)"
[2026-01-28 23:28:22] ID="centos"
[2026-01-28 23:28:22] ID_LIKE="rhel fedora"
[2026-01-28 23:28:22] VERSION_ID="7"
[2026-01-28 23:28:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 23:28:22] ANSI_COLOR="0;31"
[2026-01-28 23:28:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 23:28:22] HOME_URL="https://www.centos.org/"
[2026-01-28 23:28:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 23:28:22] 
[2026-01-28 23:28:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 23:28:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 23:28:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 23:28:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 23:28:22] 
[2026-01-28 23:28:22] 2026-01-29 04:27:46,537 | INFO     | **************************************
[2026-01-28 23:28:22] 2026-01-29 04:27:47,041 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-28 23:28:22] 2026-01-29 04:27:47,057 | INFO     | sufficient remaining disk space (26373783552 B)
[2026-01-28 23:28:22] 2026-01-29 04:27:47,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 23:28:22] 2026-01-29 04:27:47,057 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 23:28:22] 2026-01-29 04:27:47,057 | INFO     | update_server=False
[2026-01-28 23:28:22] 2026-01-29 04:27:47,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 23:28:22] 2026-01-29 04:27:47,058 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-28 23:28:22] 2026-01-29 04:27:47,058 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 23:28:22] 2026-01-29 04:27:47,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 23:28:22] 2026-01-29 04:27:47,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 23:28:22] 2026-01-29 04:27:47,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 23:28:22] 2026-01-29 04:27:47,060 | INFO     | aborting loop
[2026-01-28 23:28:22] 2026-01-29 04:27:47,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 23:28:22] 2026-01-29 04:27:47,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 23:28:22] 2026-01-29 04:27:47,192 | INFO     | all job control threads have been joined
[2026-01-28 23:28:22] 2026-01-29 04:27:47,480 | INFO     | all payload control threads have been joined
[2026-01-28 23:28:22] 2026-01-29 04:27:47,505 | INFO     | all data control threads have been joined
[2026-01-28 23:28:22] 2026-01-29 04:27:47,665 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 23:28:22] 2026-01-29 04:27:48,060 | INFO     | [job] retrieve thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,065 | INFO     | [job] queue monitor thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,066 | INFO     | [job] job monitor thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,196 | INFO     | [job] control thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,441 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,486 | INFO     | [payload] control thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,511 | INFO     | [data] control thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,569 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,715 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,715 | INFO     | [job] validate thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,861 | INFO     | [payload] failed_post thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,924 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:48,950 | INFO     | [data] copytool_in thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:49,466 | INFO     | [payload] validate_post thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:49,671 | INFO     | [data] copytool_out thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:27:51,067 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 23:28:22] 2026-01-29 04:28:15,631 | INFO     | [monitor] cgroup control has ended
[2026-01-28 23:28:22] 2026-01-29 04:28:17,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140160142485312)>', '<ExcThread(monitor, started 140159412598528)>']
[2026-01-28 23:28:22] 2026-01-29 04:28:18,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 23:28:22] 2026-01-29 04:28:18,215 | INFO     | [monitor] control thread has ended
[2026-01-28 23:28:22] 2026-01-29 04:28:22,491 | INFO     | all workflow threads have been joined
[2026-01-28 23:28:22] 2026-01-29 04:28:22,492 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 23:28:22] 2026-01-29 04:28:22,492 | INFO     | traces error code: 0
[2026-01-28 23:28:22] 2026-01-29 04:28:22,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 23:28:22] 2026-01-29 04:28:22,603 [wrapper] ==== pilot stdout END ====
[2026-01-28 23:28:22] 2026-01-29 04:28:22,605 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 23:28:22] 2026-01-29 04:28:22,608 [wrapper] pilotpid: 16528
[2026-01-28 23:28:22] 2026-01-29 04:28:22,610 [wrapper] Pilot exit status: 0
[2026-01-28 23:28:22] 2026-01-29 04:28:22,622 [wrapper] pandaids: 6986150111 6986150111
[2026-01-28 23:28:22] 2026-01-29 04:28:22,656 [wrapper] cleanup supervisor_pilot 16025 16529
[2026-01-28 23:28:22] 2026-01-29 04:28:22,658 [wrapper] Test setup, not cleaning
[2026-01-28 23:28:22] 2026-01-29 04:28:22,660 [wrapper] apfmon messages muted
[2026-01-28 23:28:22] 2026-01-29 04:28:22,662 [wrapper] ==== wrapper stdout END ====
[2026-01-28 23:28:22] 2026-01-29 04:28:22,664 [wrapper] ==== wrapper stderr END ====
[2026-01-28 23:28:22]  *** Error codes and diagnostics ***
[2026-01-28 23:28:22]     "exeErrorCode": 0,
[2026-01-28 23:28:22]     "exeErrorDiag": "",
[2026-01-28 23:28:22]     "pilotErrorCode": 0,
[2026-01-28 23:28:22]     "pilotErrorDiag": "",
[2026-01-28 23:28:22]  *** Listing of results directory ***
[2026-01-28 23:28:22] total 1163608
[2026-01-28 23:28:22] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-28 23:28:22] -rwx------ 1 boincer umatlas     36322 Jan 28 12:07 runpilot2-wrapper.sh
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas      5111 Jan 28 12:08 queuedata.json
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas    584422 Jan 28 12:08 pilot3.tar.gz
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas       100 Jan 28 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 23:28:22] -rwxr-xr-x 1 boincer umatlas      7986 Jan 28 16:48 run_atlas
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas       105 Jan 28 16:48 job.xml
[2026-01-28 23:28:22] -rw-r--r-- 3 boincer umatlas 496177113 Jan 28 16:48 EVNT.48317929._000044.pool.root.1
[2026-01-28 23:28:22] -rw-r--r-- 3 boincer umatlas 496177113 Jan 28 16:48 ATLAS.root_0
[2026-01-28 23:28:22] -rw-r--r-- 2 boincer umatlas     15845 Jan 28 16:48 start_atlas.sh
[2026-01-28 23:28:22] drwxrwx--x 2 boincer umatlas      4096 Jan 28 16:48 shared
[2026-01-28 23:28:22] -rw-r--r-- 2 boincer umatlas    597755 Jan 28 16:48 input.tar.gz
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas         0 Jan 28 16:48 boinc_lockfile
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas      2509 Jan 28 20:11 pandaJob.out
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas        57 Jan 28 20:11 setup.sh.local
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas   1005755 Jan 28 20:11 agis_schedconf.cvmfs.json
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas       445 Jan 28 20:11 workernode_map.json
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas      5952 Jan 28 23:22 init_data.xml
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas 191029899 Jan 28 23:27 HITS.48317931._005011.pool.root.1
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas        96 Jan 28 23:27 pilot_heartbeat.json
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas      1042 Jan 28 23:27 memory_monitor_summary.json
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas       532 Jan 28 23:27 boinc_task_state.xml
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas   1516246 Jan 28 23:27 agis_ddmendpoints.agis.ALL.json
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas    451978 Jan 28 23:27 log.48317931._005011.job.log.tgz.1
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas      6412 Jan 28 23:27 heartbeat.json
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas      8192 Jan 28 23:28 boinc_mmap_file
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas        29 Jan 28 23:28 wrapper_checkpoint.txt
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas      4548 Jan 28 23:28 pilotlog.txt
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas   1654181 Jan 28 23:28 log.48317931._005011.job.log.1
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas       357 Jan 28 23:28 output.list
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas       620 Jan 28 23:28 runtime_log
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas   2119680 Jan 28 23:28 result.tar.gz
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas      9427 Jan 28 23:28 runtime_log.err
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas       783 Jan 28 23:28 FCYNDm4BO58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkkGKDm10Nf2m.diag
[2026-01-28 23:28:22] -rw-r--r-- 1 boincer umatlas     23097 Jan 28 23:28 stderr.txt
[2026-01-28 23:28:22] HITS file was successfully produced:
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas 191029899 Jan 28 23:27 shared/HITS.pool.root.1
[2026-01-28 23:28:22]  *** Contents of shared directory: ***
[2026-01-28 23:28:22] total 673780
[2026-01-28 23:28:22] -rw-r--r-- 3 boincer umatlas 496177113 Jan 28 16:48 ATLAS.root_0
[2026-01-28 23:28:22] -rw-r--r-- 2 boincer umatlas     15845 Jan 28 16:48 start_atlas.sh
[2026-01-28 23:28:22] -rw-r--r-- 2 boincer umatlas    597755 Jan 28 16:48 input.tar.gz
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas 191029899 Jan 28 23:27 HITS.pool.root.1
[2026-01-28 23:28:22] -rw------- 1 boincer umatlas   2119680 Jan 28 23:28 result.tar.gz
23:28:24 (5457): run_atlas exited; CPU time 89786.855994
23:28:24 (5457): called boinc_finish(0)

</stderr_txt>
]]>

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