Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:09:01 (9276): wrapper (7.7.26015): starting
16:09:01 (9276): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 16:09:01] Arguments: --nthreads 8
[2026-01-28 16:09:01] Threads: 8
[2026-01-28 16:09:01] Checking for CVMFS
[2026-01-28 16:09:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 16:09:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 16:09:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 16:09:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 16:09:02] 2.11.2.0 2847 164540 83888 155626 3 49 20230257 20275201 1 130560 0 44820153 99.817 12003092 26267 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-28 16:09:02] CVMFS is ok
[2026-01-28 16:09:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 16:09:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 16:09:02] Further information can be found at the LHC@home message board.
[2026-01-28 16:09:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 16:09:02] Checking for apptainer binary...
[2026-01-28 16:09:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 16:09:02] Running /usr/bin/apptainer --version
[2026-01-28 16:09:02] apptainer version 1.3.2-1.el7
[2026-01-28 16:09:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 16:09:04] c-204-19.aglt2.org
[2026-01-28 16:09:04] apptainer works
[2026-01-28 16:09:04] Set ATHENA_PROC_NUMBER=8
[2026-01-28 16:09:04] Set ATHENA_CORE_NUMBER=8
[2026-01-28 16:09:04] Starting ATLAS job with PandaID=6986091782
[2026-01-28 16:09:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 18:11:44]  *** The last 200 lines of the pilot log: ***
[2026-01-28 18:11:44] 2026-01-28 23:10:58,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 18:11:44] 2026-01-28 23:10:58,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 18:11:44] 2026-01-28 23:10:58,811 | INFO     | fitting pss+swap vs Time
[2026-01-28 18:11:44] 2026-01-28 23:10:58,812 | INFO     | sum of square deviations: 522502820.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,812 | INFO     | sum of deviations: 25291245319.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,812 | INFO     | mean x: 1769638193.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,813 | INFO     | mean y: 2750427.2100840337
[2026-01-28 18:11:44] 2026-01-28 23:10:58,813 | INFO     | intersect: -85654880406.3132
[2026-01-28 18:11:44] 2026-01-28 23:10:58,813 | INFO     | chi2: 1.4870934819956023
[2026-01-28 18:11:44] 2026-01-28 23:10:58,813 | INFO     | sum of square deviations: 459366752.5
[2026-01-28 18:11:44] 2026-01-28 23:10:58,814 | INFO     | sum of deviations: 24143572409.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,814 | INFO     | mean x: 1769638040.5
[2026-01-28 18:11:44] 2026-01-28 23:10:58,814 | INFO     | mean y: 2747653.4736842103
[2026-01-28 18:11:44] 2026-01-28 23:10:58,814 | INFO     | intersect: -93006561217.94409
[2026-01-28 18:11:44] 2026-01-28 23:10:58,814 | INFO     | chi2: 1.487434853546735
[2026-01-28 18:11:44] 2026-01-28 23:10:58,815 | INFO     | current chi2=1.487434853546735 (change=-0.022955621503671128 %)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,815 | INFO     | right removable region: 113
[2026-01-28 18:11:44] 2026-01-28 23:10:58,815 | INFO     | sum of square deviations: 459366752.5
[2026-01-28 18:11:44] 2026-01-28 23:10:58,815 | INFO     | sum of deviations: 3559996752.4999995
[2026-01-28 18:11:44] 2026-01-28 23:10:58,816 | INFO     | mean x: 1769638345.5
[2026-01-28 18:11:44] 2026-01-28 23:10:58,816 | INFO     | mean y: 2802093.0789473685
[2026-01-28 18:11:44] 2026-01-28 23:10:58,816 | INFO     | intersect: -13711526879.998991
[2026-01-28 18:11:44] 2026-01-28 23:10:58,816 | INFO     | chi2: 0.006343052098436981
[2026-01-28 18:11:44] 2026-01-28 23:10:58,816 | INFO     | current chi2=0.006343052098436981 (change=99.57345976058446 %)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,816 | INFO     | sum of square deviations: 401533110.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,817 | INFO     | sum of deviations: 1896182377.0000002
[2026-01-28 18:11:44] 2026-01-28 23:10:58,817 | INFO     | mean x: 1769638498.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,817 | INFO     | mean y: 2806428.7064220184
[2026-01-28 18:11:44] 2026-01-28 23:10:58,817 | INFO     | intersect: -8354056928.261451
[2026-01-28 18:11:44] 2026-01-28 23:10:58,818 | INFO     | chi2: 0.0006052623916035653
[2026-01-28 18:11:44] 2026-01-28 23:10:58,818 | INFO     | current chi2=0.0006052623916035653 (change=90.45786819640485 %)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,818 | INFO     | sum of square deviations: 348769330.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,818 | INFO     | sum of deviations: 1340930517.5
[2026-01-28 18:11:44] 2026-01-28 23:10:58,819 | INFO     | mean x: 1769638650.5
[2026-01-28 18:11:44] 2026-01-28 23:10:58,819 | INFO     | mean y: 2808020.375
[2026-01-28 18:11:44] 2026-01-28 23:10:58,819 | INFO     | intersect: -6801008334.12775
[2026-01-28 18:11:44] 2026-01-28 23:10:58,819 | INFO     | chi2: 0.00025901971588972563
[2026-01-28 18:11:44] 2026-01-28 23:10:58,819 | INFO     | current chi2=0.00025901971588972563 (change=57.20538406434174 %)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,819 | INFO     | sum of square deviations: 300842850.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,820 | INFO     | sum of deviations: 1044635614.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,820 | INFO     | mean x: 1769638803.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,820 | INFO     | mean y: 2808961.1818181816
[2026-01-28 18:11:44] 2026-01-28 23:10:58,820 | INFO     | intersect: -6142019534.925468
[2026-01-28 18:11:44] 2026-01-28 23:10:58,820 | INFO     | chi2: 0.00021846603367577536
[2026-01-28 18:11:44] 2026-01-28 23:10:58,821 | INFO     | current chi2=0.00021846603367577536 (change=15.656600531218048 %)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,821 | INFO     | left removable region: 40
[2026-01-28 18:11:44] 2026-01-28 23:10:58,821 | INFO     | sum of square deviations: 120605052.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,821 | INFO     | sum of deviations: 220244953.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,821 | INFO     | mean x: 1769639230.0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,822 | INFO     | mean y: 2812119.1369863013
[2026-01-28 18:11:44] 2026-01-28 23:10:58,822 | INFO     | intersect: -3228844453.908612
[2026-01-28 18:11:44] 2026-01-28 23:10:58,822 | INFO     | chi2: 6.234166014067711e-05
[2026-01-28 18:11:44] 2026-01-28 23:10:58,822 | INFO     | current memory leak: 1.83 B/s (using 73 data points, chi2=0.00)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,822 | INFO     | could have reported an average CPU frequency of 1679 MHz (8 samples)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | ..............................
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . Timing measurements:
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . get job = 0 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . initial setup = 8 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . payload setup = 8 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . stage-in = 0 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . payload execution = 7265 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . stage-out = 0 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,823 | INFO     | . log creation = 0 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,824 | INFO     | ..............................
[2026-01-28 18:11:44] 2026-01-28 23:10:58,907 | INFO     | 
[2026-01-28 18:11:44] 2026-01-28 23:10:58,907 | INFO     | job summary report
[2026-01-28 18:11:44] 2026-01-28 23:10:58,907 | INFO     | --------------------------------------------------
[2026-01-28 18:11:44] 2026-01-28 23:10:58,908 | INFO     | PanDA job id: 6986091782
[2026-01-28 18:11:44] 2026-01-28 23:10:58,908 | INFO     | task id: 48310620
[2026-01-28 18:11:44] 2026-01-28 23:10:58,908 | INFO     | errors: (none)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,908 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 18:11:44] 2026-01-28 23:10:58,908 | INFO     | pilot state: finished 
[2026-01-28 18:11:44] 2026-01-28 23:10:58,908 | INFO     | transexitcode: 0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,909 | INFO     | exeerrorcode: 0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,909 | INFO     | exeerrordiag: 
[2026-01-28 18:11:44] 2026-01-28 23:10:58,909 | INFO     | exitcode: 0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,909 | INFO     | exitmsg: OK
[2026-01-28 18:11:44] 2026-01-28 23:10:58,909 | INFO     | cpuconsumptiontime: 54316 s
[2026-01-28 18:11:44] 2026-01-28 23:10:58,909 | INFO     | nevents: 400
[2026-01-28 18:11:44] 2026-01-28 23:10:58,910 | INFO     | neventsw: 0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,910 | INFO     | pid: 17398
[2026-01-28 18:11:44] 2026-01-28 23:10:58,910 | INFO     | pgrp: 17398
[2026-01-28 18:11:44] 2026-01-28 23:10:58,910 | INFO     | corecount: 8
[2026-01-28 18:11:44] 2026-01-28 23:10:58,910 | INFO     | event service: False
[2026-01-28 18:11:44] 2026-01-28 23:10:58,910 | INFO     | sizes: {0: 2283976, 1: 2284210, 11: 2284210, 7277: 2311532, 7279: 2320530, 7280: 2320908}
[2026-01-28 18:11:44] 2026-01-28 23:10:58,911 | INFO     | --------------------------------------------------
[2026-01-28 18:11:44] 2026-01-28 23:10:58,911 | INFO     | 
[2026-01-28 18:11:44] 2026-01-28 23:10:58,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-28 18:11:44] 2026-01-28 23:10:58,939 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,940 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,940 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,940 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,940 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,940 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,941 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,941 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,942 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,943 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,943 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 18:11:44] 2026-01-28 23:10:58,943 | INFO     | job 6986091782 has completed (purged errors)
[2026-01-28 18:11:44] 2026-01-28 23:10:58,943 | INFO     | overall cleanup function is called
[2026-01-28 18:11:44] 2026-01-28 23:10:59,952 | INFO     | --- collectZombieJob: --- 10, [17398]
[2026-01-28 18:11:44] 2026-01-28 23:10:59,952 | INFO     | zombie collector waiting for pid 17398
[2026-01-28 18:11:44] 2026-01-28 23:10:59,952 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 18:11:44] 2026-01-28 23:10:59,952 | INFO     | collected zombie processes
[2026-01-28 18:11:44] 2026-01-28 23:10:59,952 | INFO     | will attempt to kill all subprocesses of pid=17398
[2026-01-28 18:11:44] 2026-01-28 23:11:00,043 | INFO     | process IDs to be killed: [17398] (in reverse order)
[2026-01-28 18:11:44] 2026-01-28 23:11:00,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 18:11:44] 2026-01-28 23:11:00,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 18:11:44] 2026-01-28 23:11:00,104 | INFO     | did not find any defunct processes belonging to 17398
[2026-01-28 18:11:44] 2026-01-28 23:11:00,107 | INFO     | did not find any defunct processes belonging to 17398
[2026-01-28 18:11:44] 2026-01-28 23:11:00,107 | INFO     | ready for new job
[2026-01-28 18:11:44] 2026-01-28 23:11:00,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 18:11:44] 2026-01-28 23:11:00,109 | INFO     | **************************************
[2026-01-28 18:11:44] 2026-01-28 23:11:00,109 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 18:11:44] 2026-01-28 23:11:00,109 | INFO     | **************************************
[2026-01-28 18:11:44] 2026-01-28 23:11:00,109 | INFO     | 
[2026-01-28 18:11:44] 2026-01-28 23:11:00,110 | INFO     | architecture information:
[2026-01-28 18:11:44] 2026-01-28 23:11:00,110 | INFO     | executing command: cat /etc/os-release
[2026-01-28 18:11:44] 2026-01-28 23:11:00,128 | INFO     | cat /etc/os-release:
[2026-01-28 18:11:44] NAME="CentOS Linux"
[2026-01-28 18:11:44] VERSION="7 (Core)"
[2026-01-28 18:11:44] ID="centos"
[2026-01-28 18:11:44] ID_LIKE="rhel fedora"
[2026-01-28 18:11:44] VERSION_ID="7"
[2026-01-28 18:11:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 18:11:44] ANSI_COLOR="0;31"
[2026-01-28 18:11:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 18:11:44] HOME_URL="https://www.centos.org/"
[2026-01-28 18:11:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 18:11:44] 
[2026-01-28 18:11:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 18:11:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 18:11:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 18:11:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 18:11:44] 
[2026-01-28 18:11:44] 2026-01-28 23:11:00,129 | INFO     | **************************************
[2026-01-28 18:11:44] 2026-01-28 23:11:00,632 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-28 18:11:44] 2026-01-28 23:11:00,651 | INFO     | sufficient remaining disk space (17913872384 B)
[2026-01-28 18:11:44] 2026-01-28 23:11:00,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 18:11:44] 2026-01-28 23:11:00,651 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 18:11:44] 2026-01-28 23:11:00,652 | INFO     | update_server=False
[2026-01-28 18:11:44] 2026-01-28 23:11:00,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 18:11:44] 2026-01-28 23:11:00,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:11:44] 2026-01-28 23:11:00,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 18:11:44] 2026-01-28 23:11:00,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 18:11:44] 2026-01-28 23:11:00,725 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 18:11:44] 2026-01-28 23:11:00,725 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 18:11:44] 2026-01-28 23:11:00,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:11:44] 2026-01-28 23:11:00,726 | INFO     | will abort loop
[2026-01-28 18:11:44] 2026-01-28 23:11:01,044 | INFO     | all data control threads have been joined
[2026-01-28 18:11:44] 2026-01-28 23:11:01,079 | INFO     | all payload control threads have been joined
[2026-01-28 18:11:44] 2026-01-28 23:11:01,654 | INFO     | [job] queue monitor thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:01,657 | INFO     | [job] retrieve thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:01,732 | INFO     | [job] job monitor thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:01,764 | INFO     | all job control threads have been joined
[2026-01-28 18:11:44] 2026-01-28 23:11:01,963 | INFO     | [payload] validate_post thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,043 | INFO     | [data] copytool_in thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,050 | INFO     | [data] control thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,085 | INFO     | [payload] control thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,519 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,528 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,540 | INFO     | [job] validate thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,665 | INFO     | [data] copytool_out thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,769 | INFO     | [job] control thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:02,814 | INFO     | [payload] failed_post thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:03,077 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:04,659 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 18:11:44] 2026-01-28 23:11:31,248 | INFO     | PID=12997 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-28 18:11:44] 2026-01-28 23:11:31,248 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 18:11:44] 2026-01-28 23:11:31,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 18:11:44] 2026-01-28 23:11:31,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 18:11:44] 2026-01-28 23:11:38,697 | INFO     | [monitor] cgroup control has ended
[2026-01-28 18:11:44] 2026-01-28 23:11:39,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140104251025216)>', '<ExcThread(monitor, started 140103301195520)>']
[2026-01-28 18:11:44] 2026-01-28 23:11:40,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 18:11:44] 2026-01-28 23:11:40,292 | INFO     | [monitor] control thread has ended
[2026-01-28 18:11:44] 2026-01-28 23:11:44,397 | INFO     | all workflow threads have been joined
[2026-01-28 18:11:44] 2026-01-28 23:11:44,397 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 18:11:44] 2026-01-28 23:11:44,402 | INFO     | traces error code: 0
[2026-01-28 18:11:44] 2026-01-28 23:11:44,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 18:11:44] 2026-01-28 23:11:44,514 [wrapper] ==== pilot stdout END ====
[2026-01-28 18:11:44] 2026-01-28 23:11:44,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 18:11:44] 2026-01-28 23:11:44,522 [wrapper] pilotpid: 12997
[2026-01-28 18:11:44] 2026-01-28 23:11:44,527 [wrapper] Pilot exit status: 0
[2026-01-28 18:11:44] 2026-01-28 23:11:44,547 [wrapper] pandaids: 6986091782
[2026-01-28 18:11:44] 2026-01-28 23:11:44,595 [wrapper] cleanup supervisor_pilot  1338 12998
[2026-01-28 18:11:44] 2026-01-28 23:11:44,600 [wrapper] Test setup, not cleaning
[2026-01-28 18:11:44] 2026-01-28 23:11:44,605 [wrapper] apfmon messages muted
[2026-01-28 18:11:44] 2026-01-28 23:11:44,609 [wrapper] ==== wrapper stdout END ====
[2026-01-28 18:11:44] 2026-01-28 23:11:44,614 [wrapper] ==== wrapper stderr END ====
[2026-01-28 18:11:44]  *** Error codes and diagnostics ***
[2026-01-28 18:11:44]     "exeErrorCode": 0,
[2026-01-28 18:11:44]     "exeErrorDiag": "",
[2026-01-28 18:11:44]     "pilotErrorCode": 0,
[2026-01-28 18:11:44]     "pilotErrorDiag": "",
[2026-01-28 18:11:44]  *** Listing of results directory ***
[2026-01-28 18:11:44] total 714112
[2026-01-28 18:11:44] -rwx------ 1 boincer umatlas     36322 Jan 28 12:06 runpilot2-wrapper.sh
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas      5111 Jan 28 12:08 queuedata.json
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas    584422 Jan 28 12:08 pilot3.tar.gz
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas       100 Jan 28 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 18:11:44] -rwxr-xr-x 1 boincer umatlas      7986 Jan 28 16:08 run_atlas
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas       105 Jan 28 16:08 job.xml
[2026-01-28 18:11:44] -rw-r--r-- 2 boincer umatlas 528452075 Jan 28 16:09 EVNT.48310618._000031.pool.root.1
[2026-01-28 18:11:44] -rw-r--r-- 2 boincer umatlas     15845 Jan 28 16:09 start_atlas.sh
[2026-01-28 18:11:44] drwxrwx--x 2 boincer umatlas      4096 Jan 28 16:09 shared
[2026-01-28 18:11:44] -rw-r--r-- 2 boincer umatlas    597760 Jan 28 16:09 input.tar.gz
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas         0 Jan 28 16:09 boinc_lockfile
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas      2522 Jan 28 16:09 pandaJob.out
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas        57 Jan 28 16:09 setup.sh.local
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas   1005755 Jan 28 16:09 agis_schedconf.cvmfs.json
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas   1516246 Jan 28 16:09 agis_ddmendpoints.agis.ALL.json
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas       432 Jan 28 16:09 workernode_map.json
[2026-01-28 18:11:44] drwx------ 5 boincer umatlas      4096 Jan 28 16:09 pilot3
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas      5910 Jan 28 18:02 init_data.xml
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas 196006580 Jan 28 18:10 HITS.48310620._001355.pool.root.1
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas       530 Jan 28 18:10 boinc_task_state.xml
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas      1047 Jan 28 18:10 memory_monitor_summary.json
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas    388451 Jan 28 18:10 log.48310620._001355.job.log.tgz.1
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas      6396 Jan 28 18:10 heartbeat.json
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas      8192 Jan 28 18:11 boinc_mmap_file
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas        27 Jan 28 18:11 wrapper_checkpoint.txt
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas        95 Jan 28 18:11 pilot_heartbeat.json
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas      4928 Jan 28 18:11 pilotlog.txt
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas   1034929 Jan 28 18:11 log.48310620._001355.job.log.1
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas       357 Jan 28 18:11 output.list
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas       620 Jan 28 18:11 runtime_log
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas   1443840 Jan 28 18:11 result.tar.gz
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas       658 Jan 28 18:11 tMRNDm4AO58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKhGKDmRhDRUo.diag
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas      9341 Jan 28 18:11 runtime_log.err
[2026-01-28 18:11:44] -rw-r--r-- 1 boincer umatlas     20877 Jan 28 18:11 stderr.txt
[2026-01-28 18:11:44] HITS file was successfully produced:
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas 196006580 Jan 28 18:10 shared/HITS.pool.root.1
[2026-01-28 18:11:44]  *** Contents of shared directory: ***
[2026-01-28 18:11:44] total 709500
[2026-01-28 18:11:44] -rw-r--r-- 2 boincer umatlas 528452075 Jan 28 16:09 ATLAS.root_0
[2026-01-28 18:11:44] -rw-r--r-- 2 boincer umatlas     15845 Jan 28 16:09 start_atlas.sh
[2026-01-28 18:11:44] -rw-r--r-- 2 boincer umatlas    597760 Jan 28 16:09 input.tar.gz
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas 196006580 Jan 28 18:10 HITS.pool.root.1
[2026-01-28 18:11:44] -rw------- 1 boincer umatlas   1443840 Jan 28 18:11 result.tar.gz
18:11:46 (9276): run_atlas exited; CPU time 54276.738991
18:11:46 (9276): called boinc_finish(0)

</stderr_txt>
]]>

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