Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:30:03 (3189262): wrapper (7.7.26015): starting
02:30:03 (3189262): wrapper: running run_atlas (--nthreads 3)
[2026-01-29 02:30:03] Arguments: --nthreads 3
[2026-01-29 02:30:03] Threads: 3
[2026-01-29 02:30:03] Checking for CVMFS
[2026-01-29 02:30:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 02:30:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 02:30:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 02:30:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 02:30:03] 2.9.2.0 3059343 675 64488 155626 1 188 23341256 36864001 0 130560 0 319639 99.993 7116 4870 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 02:30:03] CVMFS is ok
[2026-01-29 02:30:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 02:30:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 02:30:03] Further information can be found at the LHC@home message board.
[2026-01-29 02:30:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 02:30:03] Checking for apptainer binary...
[2026-01-29 02:30:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 02:30:03] Running /usr/bin/apptainer --version
[2026-01-29 02:30:03] apptainer version 1.4.1-1.1
[2026-01-29 02:30:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 02:30:04] thA312a
[2026-01-29 02:30:04] apptainer works
[2026-01-29 02:30:04] Set ATHENA_PROC_NUMBER=3
[2026-01-29 02:30:04] Set ATHENA_CORE_NUMBER=3
[2026-01-29 02:30:04] Starting ATLAS job with PandaID=6986090063
[2026-01-29 02:30:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 03:52:39]  *** The last 200 lines of the pilot log: ***
[2026-01-29 03:52:39] 2026-01-29 02:52:07,521 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 03:52:39] 2026-01-29 02:52:07,521 | INFO     | job 6986090063 has completed (purged errors)
[2026-01-29 03:52:39] 2026-01-29 02:52:07,521 | INFO     | overall cleanup function is called
[2026-01-29 03:52:39] 2026-01-29 02:52:08,528 | INFO     | --- collectZombieJob: --- 10, [3197738]
[2026-01-29 03:52:39] 2026-01-29 02:52:08,528 | INFO     | zombie collector waiting for pid 3197738
[2026-01-29 03:52:39] 2026-01-29 02:52:08,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 03:52:39] 2026-01-29 02:52:08,528 | INFO     | collected zombie processes
[2026-01-29 03:52:39] 2026-01-29 02:52:08,528 | INFO     | will attempt to kill all subprocesses of pid=3197738
[2026-01-29 03:52:39] 2026-01-29 02:52:08,580 | INFO     | process IDs to be killed: [3197738] (in reverse order)
[2026-01-29 03:52:39] 2026-01-29 02:52:08,608 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 03:52:39] 2026-01-29 02:52:08,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 03:52:39] 2026-01-29 02:52:08,610 | INFO     | did not find any defunct processes belonging to 3197738
[2026-01-29 03:52:39] 2026-01-29 02:52:08,611 | INFO     | did not find any defunct processes belonging to 3197738
[2026-01-29 03:52:39] 2026-01-29 02:52:08,611 | INFO     | ready for new job
[2026-01-29 03:52:39] 2026-01-29 02:52:08,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 03:52:39] 2026-01-29 02:52:08,612 | INFO     | **************************************
[2026-01-29 03:52:39] 2026-01-29 02:52:08,612 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 03:52:39] 2026-01-29 02:52:08,612 | INFO     | **************************************
[2026-01-29 03:52:39] 2026-01-29 02:52:08,612 | INFO     | 
[2026-01-29 03:52:39] 2026-01-29 02:52:08,613 | INFO     | architecture information:
[2026-01-29 03:52:39] 2026-01-29 02:52:08,613 | INFO     | executing command: cat /etc/os-release
[2026-01-29 03:52:39] 2026-01-29 02:52:08,622 | INFO     | cat /etc/os-release:
[2026-01-29 03:52:39] NAME="CentOS Linux"
[2026-01-29 03:52:39] VERSION="7 (Core)"
[2026-01-29 03:52:39] ID="centos"
[2026-01-29 03:52:39] ID_LIKE="rhel fedora"
[2026-01-29 03:52:39] VERSION_ID="7"
[2026-01-29 03:52:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 03:52:39] ANSI_COLOR="0;31"
[2026-01-29 03:52:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 03:52:39] HOME_URL="https://www.centos.org/"
[2026-01-29 03:52:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 03:52:39] 
[2026-01-29 03:52:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 03:52:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 03:52:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 03:52:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 03:52:39] 
[2026-01-29 03:52:39] 2026-01-29 02:52:08,622 | INFO     | **************************************
[2026-01-29 03:52:39] 2026-01-29 02:52:09,125 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 03:52:39] 2026-01-29 02:52:09,135 | INFO     | sufficient remaining disk space (278259564544 B)
[2026-01-29 03:52:39] 2026-01-29 02:52:09,135 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 03:52:39] 2026-01-29 02:52:09,135 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 03:52:39] 2026-01-29 02:52:09,135 | INFO     | update_server=False
[2026-01-29 03:52:39] 2026-01-29 02:52:09,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 03:52:39] 2026-01-29 02:52:09,367 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 03:52:39] 2026-01-29 02:52:09,524 | INFO     | all payload control threads have been joined
[2026-01-29 03:52:39] 2026-01-29 02:52:09,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 03:52:39] 2026-01-29 02:52:09,732 | INFO     | aborting loop
[2026-01-29 03:52:39] 2026-01-29 02:52:10,141 | INFO     | [job] retrieve thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:10,181 | INFO     | all data control threads have been joined
[2026-01-29 03:52:39] 2026-01-29 02:52:10,188 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:10,222 | INFO     | [data] copytool_in thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:10,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 03:52:39] 2026-01-29 02:52:10,530 | INFO     | [payload] control thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:10,738 | INFO     | [job] job monitor thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:10,738 | INFO     | all job control threads have been joined
[2026-01-29 03:52:39] 2026-01-29 02:52:11,046 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,096 | INFO     | [payload] failed_post thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,186 | INFO     | [data] control thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,373 | INFO     | [data] copytool_out thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,514 | INFO     | [job] validate thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,582 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,678 | INFO     | [payload] validate_post thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:11,743 | INFO     | [job] control thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:12,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 03:52:39] 2026-01-29 02:52:13,127 | INFO     | [job] queue monitor thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:14,310 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:19,513 | INFO     | job.realtimelogging is not enabled
[2026-01-29 03:52:39] 2026-01-29 02:52:19,696 | INFO     | [monitor] cgroup control has ended
[2026-01-29 03:52:39] 2026-01-29 02:52:20,518 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 03:52:39] 2026-01-29 02:52:20,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800604231488)>', '<ExcThread(monitor, started 139799977522944)>']
[2026-01-29 03:52:39] 2026-01-29 02:52:26,001 | INFO     | all workflow threads have been joined
[2026-01-29 03:52:39] 2026-01-29 02:52:26,001 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 03:52:39] 2026-01-29 02:52:26,001 | INFO     | traces error code: 0
[2026-01-29 03:52:39] 2026-01-29 02:52:26,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 03:52:39] 2026-01-29 02:52:39,121 | INFO     | PID=3193309 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 03:52:39] 2026-01-29 02:52:39,121 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 03:52:39] 2026-01-29 02:52:39,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 03:52:39] 2026-01-29 02:52:39,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 03:52:39] 2026-01-29 02:52:39,122 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 03:52:39] 2026-01-29 02:52:39,122 | INFO     | [monitor] control thread has ended
[2026-01-29 03:52:39] 2026-01-29 02:52:39,167 [wrapper] ==== pilot stdout END ====
[2026-01-29 03:52:39] 2026-01-29 02:52:39,170 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 03:52:39] 2026-01-29 02:52:39,172 [wrapper] pilotpid: 3193309
[2026-01-29 03:52:39] 2026-01-29 02:52:39,174 [wrapper] Pilot exit status: 0
[2026-01-29 03:52:39] 2026-01-29 02:52:39,182 [wrapper] pandaids: 6986090063
[2026-01-29 03:52:39] 2026-01-29 02:52:39,201 [wrapper] cleanup supervisor_pilot 3205178 3193310
[2026-01-29 03:52:39] 2026-01-29 02:52:39,204 [wrapper] Test setup, not cleaning
[2026-01-29 03:52:39] 2026-01-29 02:52:39,206 [wrapper] apfmon messages muted
[2026-01-29 03:52:39] 2026-01-29 02:52:39,209 [wrapper] ==== wrapper stdout END ====
[2026-01-29 03:52:39] 2026-01-29 02:52:39,211 [wrapper] ==== wrapper stderr END ====
[2026-01-29 03:52:39]  *** Error codes and diagnostics ***
[2026-01-29 03:52:39]     "exeErrorCode": 0,
[2026-01-29 03:52:39]     "exeErrorDiag": "",
[2026-01-29 03:52:39]     "pilotErrorCode": 0,
[2026-01-29 03:52:39]     "pilotErrorDiag": "",
[2026-01-29 03:52:39]  *** Listing of results directory ***
[2026-01-29 03:52:39] total 669012
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc    584422 Jan 28 16:24 pilot3.tar.gz
[2026-01-29 03:52:39] -rwx------ 1 boinc boinc     36322 Jan 28 16:24 runpilot2-wrapper.sh
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc      5111 Jan 28 16:24 queuedata.json
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc       100 Jan 29 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 03:52:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 02:30 run_atlas
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc       105 Jan 29 02:30 job.xml
[2026-01-29 03:52:39] -rw-r--r-- 2 boinc boinc 498329291 Jan 29 02:30 EVNT.48317869._000153.pool.root.1
[2026-01-29 03:52:39] drwxrwx--x 2 boinc boinc      4096 Jan 29 02:30 shared
[2026-01-29 03:52:39] -rw-r--r-- 2 boinc boinc    597758 Jan 29 02:30 input.tar.gz
[2026-01-29 03:52:39] -rw-r--r-- 2 boinc boinc     15845 Jan 29 02:30 start_atlas.sh
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc         0 Jan 29 02:30 boinc_setup_complete
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc      6447 Jan 29 02:30 init_data.xml
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc         0 Jan 29 02:30 boinc_lockfile
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc      2515 Jan 29 02:30 pandaJob.out
[2026-01-29 03:52:39] -rw------- 1 boinc boinc   1005755 Jan 29 02:30 agis_schedconf.cvmfs.json
[2026-01-29 03:52:39] -rw------- 1 boinc boinc   1516246 Jan 29 02:30 agis_ddmendpoints.agis.ALL.json
[2026-01-29 03:52:39] -rw------- 1 boinc boinc       424 Jan 29 02:30 workernode_map.json
[2026-01-29 03:52:39] drwx------ 5 boinc boinc      4096 Jan 29 02:30 pilot3
[2026-01-29 03:52:39] -rw------- 1 boinc boinc 180798459 Jan 29 03:51 HITS.48317872._007678.pool.root.1
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc       530 Jan 29 03:51 boinc_task_state.xml
[2026-01-29 03:52:39] -rw------- 1 boinc boinc      1017 Jan 29 03:51 memory_monitor_summary.json
[2026-01-29 03:52:39] -rw------- 1 boinc boinc    289023 Jan 29 03:52 log.48317872._007678.job.log.tgz.1
[2026-01-29 03:52:39] -rw------- 1 boinc boinc      6302 Jan 29 03:52 heartbeat.json
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc      8192 Jan 29 03:52 boinc_mmap_file
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc        27 Jan 29 03:52 wrapper_checkpoint.txt
[2026-01-29 03:52:39] -rw------- 1 boinc boinc       747 Jan 29 03:52 pilotlog.txt
[2026-01-29 03:52:39] -rw------- 1 boinc boinc        95 Jan 29 03:52 pilot_heartbeat.json
[2026-01-29 03:52:39] -rw------- 1 boinc boinc    720602 Jan 29 03:52 log.48317872._007678.job.log.1
[2026-01-29 03:52:39] -rw------- 1 boinc boinc       357 Jan 29 03:52 output.list
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc       620 Jan 29 03:52 runtime_log
[2026-01-29 03:52:39] -rw------- 1 boinc boinc   1024000 Jan 29 03:52 result.tar.gz
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc      8901 Jan 29 03:52 runtime_log.err
[2026-01-29 03:52:39] -rw------- 1 boinc boinc       659 Jan 29 03:52 3h4NDmOaM58n9Rq4apOajLDm4fhM0noT9bVooX4SDmwMGKDmg3Eemn.diag
[2026-01-29 03:52:39] -rw-r--r-- 1 boinc boinc     10996 Jan 29 03:52 stderr.txt
[2026-01-29 03:52:39] HITS file was successfully produced:
[2026-01-29 03:52:39] -rw------- 1 boinc boinc 180798459 Jan 29 03:51 shared/HITS.pool.root.1
[2026-01-29 03:52:39]  *** Contents of shared directory: ***
[2026-01-29 03:52:39] total 664824
[2026-01-29 03:52:39] -rw-r--r-- 2 boinc boinc 498329291 Jan 29 02:30 ATLAS.root_0
[2026-01-29 03:52:39] -rw-r--r-- 2 boinc boinc    597758 Jan 29 02:30 input.tar.gz
[2026-01-29 03:52:39] -rw-r--r-- 2 boinc boinc     15845 Jan 29 02:30 start_atlas.sh
[2026-01-29 03:52:39] -rw------- 1 boinc boinc 180798459 Jan 29 03:51 HITS.pool.root.1
[2026-01-29 03:52:39] -rw------- 1 boinc boinc   1024000 Jan 29 03:52 result.tar.gz
03:52:41 (3189262): run_atlas exited; CPU time 14107.033296
03:52:41 (3189262): called boinc_finish(0)

</stderr_txt>
]]>

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