Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:09:50 (1894042): wrapper (7.7.26015): starting
01:09:50 (1894042): wrapper: running run_atlas (--nthreads 4)
[2026-01-29 01:09:50] Arguments: --nthreads 4
[2026-01-29 01:09:50] Threads: 4
[2026-01-29 01:09:50] Checking for CVMFS
[2026-01-29 01:09:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 01:09:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 01:09:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 01:09:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 01:09:50] 2.9.2.0 1806026 450 71016 155626 2 188 23501193 36864001 0 130560 0 238801 99.990 7092 5051 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 01:09:50] CVMFS is ok
[2026-01-29 01:09:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 01:09:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 01:09:50] Further information can be found at the LHC@home message board.
[2026-01-29 01:09:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 01:09:50] Checking for apptainer binary...
[2026-01-29 01:09:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 01:09:50] Running /usr/bin/apptainer --version
[2026-01-29 01:09:50] apptainer version 1.4.1-1.1
[2026-01-29 01:09:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 01:09:51] thA325
[2026-01-29 01:09:51] apptainer works
[2026-01-29 01:09:51] Set ATHENA_PROC_NUMBER=4
[2026-01-29 01:09:51] Set ATHENA_CORE_NUMBER=4
[2026-01-29 01:09:51] Starting ATLAS job with PandaID=6986090043
[2026-01-29 01:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 02:20:17]  *** The last 200 lines of the pilot log: ***
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | job 6986090043 has completed (purged errors)
[2026-01-29 02:20:17] 2026-01-29 01:19:46,186 | INFO     | overall cleanup function is called
[2026-01-29 02:20:17] 2026-01-29 01:19:47,193 | INFO     | --- collectZombieJob: --- 10, [1902640]
[2026-01-29 02:20:17] 2026-01-29 01:19:47,193 | INFO     | zombie collector waiting for pid 1902640
[2026-01-29 02:20:17] 2026-01-29 01:19:47,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 02:20:17] 2026-01-29 01:19:47,193 | INFO     | collected zombie processes
[2026-01-29 02:20:17] 2026-01-29 01:19:47,194 | INFO     | will attempt to kill all subprocesses of pid=1902640
[2026-01-29 02:20:17] 2026-01-29 01:19:47,242 | INFO     | process IDs to be killed: [1902640] (in reverse order)
[2026-01-29 02:20:17] 2026-01-29 01:19:47,274 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 02:20:17] 2026-01-29 01:19:47,275 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 02:20:17] 2026-01-29 01:19:47,276 | INFO     | did not find any defunct processes belonging to 1902640
[2026-01-29 02:20:17] 2026-01-29 01:19:47,278 | INFO     | did not find any defunct processes belonging to 1902640
[2026-01-29 02:20:17] 2026-01-29 01:19:47,278 | INFO     | ready for new job
[2026-01-29 02:20:17] 2026-01-29 01:19:47,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 02:20:17] 2026-01-29 01:19:47,278 | INFO     | **************************************
[2026-01-29 02:20:17] 2026-01-29 01:19:47,279 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 02:20:17] 2026-01-29 01:19:47,279 | INFO     | **************************************
[2026-01-29 02:20:17] 2026-01-29 01:19:47,279 | INFO     | 
[2026-01-29 02:20:17] 2026-01-29 01:19:47,279 | INFO     | architecture information:
[2026-01-29 02:20:17] 2026-01-29 01:19:47,279 | INFO     | executing command: cat /etc/os-release
[2026-01-29 02:20:17] 2026-01-29 01:19:47,292 | INFO     | cat /etc/os-release:
[2026-01-29 02:20:17] NAME="CentOS Linux"
[2026-01-29 02:20:17] VERSION="7 (Core)"
[2026-01-29 02:20:17] ID="centos"
[2026-01-29 02:20:17] ID_LIKE="rhel fedora"
[2026-01-29 02:20:17] VERSION_ID="7"
[2026-01-29 02:20:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 02:20:17] ANSI_COLOR="0;31"
[2026-01-29 02:20:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 02:20:17] HOME_URL="https://www.centos.org/"
[2026-01-29 02:20:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 02:20:17] 
[2026-01-29 02:20:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 02:20:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 02:20:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 02:20:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 02:20:17] 
[2026-01-29 02:20:17] 2026-01-29 01:19:47,292 | INFO     | **************************************
[2026-01-29 02:20:17] 2026-01-29 01:19:47,795 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 02:20:17] 2026-01-29 01:19:47,812 | INFO     | sufficient remaining disk space (232667480064 B)
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | INFO     | update_server=False
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 02:20:17] 2026-01-29 01:19:47,813 | INFO     | aborting loop
[2026-01-29 02:20:17] 2026-01-29 01:19:48,133 | INFO     | all payload control threads have been joined
[2026-01-29 02:20:17] 2026-01-29 01:19:48,786 | INFO     | all data control threads have been joined
[2026-01-29 02:20:17] 2026-01-29 01:19:48,818 | INFO     | [job] retrieve thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:48,819 | INFO     | [job] queue monitor thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:48,819 | INFO     | [job] job monitor thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:48,860 | INFO     | all job control threads have been joined
[2026-01-29 02:20:17] 2026-01-29 01:19:49,025 | INFO     | [payload] validate_post thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 02:20:17] 2026-01-29 01:19:49,139 | INFO     | [payload] control thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,251 | INFO     | [job] validate thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,382 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,468 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,563 | INFO     | [data] copytool_in thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,620 | INFO     | [payload] failed_post thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,792 | INFO     | [data] control thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:49,866 | INFO     | [job] control thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:50,194 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:51,084 | INFO     | [data] copytool_out thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:51,819 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:19:58,361 | INFO     | job.realtimelogging is not enabled
[2026-01-29 02:20:17] 2026-01-29 01:19:59,367 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 02:20:17] 2026-01-29 01:20:09,041 | INFO     | [monitor] cgroup control has ended
[2026-01-29 02:20:17] 2026-01-29 01:20:10,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909804402496)>', '<ExcThread(monitor, started 139908920354560)>']
[2026-01-29 02:20:17] 2026-01-29 01:20:15,803 | INFO     | all workflow threads have been joined
[2026-01-29 02:20:17] 2026-01-29 01:20:15,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 02:20:17] 2026-01-29 01:20:15,804 | INFO     | traces error code: 0
[2026-01-29 02:20:17] 2026-01-29 01:20:15,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 02:20:17] 2026-01-29 01:20:17,780 | INFO     | PID=1898142 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 02:20:17] 2026-01-29 01:20:17,780 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 02:20:17] 2026-01-29 01:20:17,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 02:20:17] 2026-01-29 01:20:17,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 02:20:17] 2026-01-29 01:20:17,780 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 02:20:17] 2026-01-29 01:20:17,780 | INFO     | [monitor] control thread has ended
[2026-01-29 02:20:17] 2026-01-29 01:20:17,841 [wrapper] ==== pilot stdout END ====
[2026-01-29 02:20:17] 2026-01-29 01:20:17,845 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 02:20:17] 2026-01-29 01:20:17,849 [wrapper] pilotpid: 1898142
[2026-01-29 02:20:17] 2026-01-29 01:20:17,852 [wrapper] Pilot exit status: 0
[2026-01-29 02:20:17] 2026-01-29 01:20:17,863 [wrapper] pandaids: 6986090043
[2026-01-29 02:20:17] 2026-01-29 01:20:17,884 [wrapper] cleanup supervisor_pilot 1908101 1898143
[2026-01-29 02:20:17] 2026-01-29 01:20:17,888 [wrapper] Test setup, not cleaning
[2026-01-29 02:20:17] 2026-01-29 01:20:17,891 [wrapper] apfmon messages muted
[2026-01-29 02:20:17] 2026-01-29 01:20:17,895 [wrapper] ==== wrapper stdout END ====
[2026-01-29 02:20:17] 2026-01-29 01:20:17,898 [wrapper] ==== wrapper stderr END ====
[2026-01-29 02:20:17]  *** Error codes and diagnostics ***
[2026-01-29 02:20:17]     "exeErrorCode": 0,
[2026-01-29 02:20:17]     "exeErrorDiag": "",
[2026-01-29 02:20:17]     "pilotErrorCode": 0,
[2026-01-29 02:20:17]     "pilotErrorDiag": "",
[2026-01-29 02:20:17]  *** Listing of results directory ***
[2026-01-29 02:20:17] total 672412
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc    584422 Jan 28 16:24 pilot3.tar.gz
[2026-01-29 02:20:17] -rwx------ 1 boinc boinc     36322 Jan 28 16:24 runpilot2-wrapper.sh
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc      5111 Jan 28 16:24 queuedata.json
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc       100 Jan 29 01:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 02:20:17] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 01:09 run_atlas
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc       105 Jan 29 01:09 job.xml
[2026-01-29 02:20:17] -rw-r--r-- 2 boinc boinc 498329291 Jan 29 01:09 EVNT.48317869._000153.pool.root.1
[2026-01-29 02:20:17] -rw-r--r-- 2 boinc boinc    597762 Jan 29 01:09 input.tar.gz
[2026-01-29 02:20:17] -rw-r--r-- 2 boinc boinc     15845 Jan 29 01:09 start_atlas.sh
[2026-01-29 02:20:17] drwxrwx--x 2 boinc boinc      4096 Jan 29 01:09 shared
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc         0 Jan 29 01:09 boinc_setup_complete
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc      6369 Jan 29 01:09 init_data.xml
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc         0 Jan 29 01:09 boinc_lockfile
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc      2514 Jan 29 01:09 pandaJob.out
[2026-01-29 02:20:17] -rw------- 1 boinc boinc   1005755 Jan 29 01:10 agis_schedconf.cvmfs.json
[2026-01-29 02:20:17] -rw------- 1 boinc boinc   1516246 Jan 29 01:10 agis_ddmendpoints.agis.ALL.json
[2026-01-29 02:20:17] -rw------- 1 boinc boinc       421 Jan 29 01:10 workernode_map.json
[2026-01-29 02:20:17] drwx------ 5 boinc boinc      4096 Jan 29 01:10 pilot3
[2026-01-29 02:20:17] -rw------- 1 boinc boinc        95 Jan 29 02:19 pilot_heartbeat.json
[2026-01-29 02:20:17] -rw------- 1 boinc boinc 184506210 Jan 29 02:19 HITS.48317872._007658.pool.root.1
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc       530 Jan 29 02:19 boinc_task_state.xml
[2026-01-29 02:20:17] -rw------- 1 boinc boinc      1025 Jan 29 02:19 memory_monitor_summary.json
[2026-01-29 02:20:17] -rw------- 1 boinc boinc    271906 Jan 29 02:19 log.48317872._007658.job.log.tgz.1
[2026-01-29 02:20:17] -rw------- 1 boinc boinc      6321 Jan 29 02:19 heartbeat.json
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc        27 Jan 29 02:19 wrapper_checkpoint.txt
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc      8192 Jan 29 02:20 boinc_mmap_file
[2026-01-29 02:20:17] -rw------- 1 boinc boinc       747 Jan 29 02:20 pilotlog.txt
[2026-01-29 02:20:17] -rw------- 1 boinc boinc    621643 Jan 29 02:20 log.48317872._007658.job.log.1
[2026-01-29 02:20:17] -rw------- 1 boinc boinc       357 Jan 29 02:20 output.list
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc       620 Jan 29 02:20 runtime_log
[2026-01-29 02:20:17] -rw------- 1 boinc boinc    911360 Jan 29 02:20 result.tar.gz
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc      8896 Jan 29 02:20 runtime_log.err
[2026-01-29 02:20:17] -rw------- 1 boinc boinc       657 Jan 29 02:20 A3pNDmOaM58n9Rq4apOajLDm4fhM0noT9bVooX4SDmmMGKDmWiB22m.diag
[2026-01-29 02:20:17] -rw-r--r-- 1 boinc boinc     11812 Jan 29 02:20 stderr.txt
[2026-01-29 02:20:17] HITS file was successfully produced:
[2026-01-29 02:20:17] -rw------- 1 boinc boinc 184506210 Jan 29 02:19 shared/HITS.pool.root.1
[2026-01-29 02:20:17]  *** Contents of shared directory: ***
[2026-01-29 02:20:17] total 668336
[2026-01-29 02:20:17] -rw-r--r-- 2 boinc boinc 498329291 Jan 29 01:09 ATLAS.root_0
[2026-01-29 02:20:17] -rw-r--r-- 2 boinc boinc    597762 Jan 29 01:09 input.tar.gz
[2026-01-29 02:20:17] -rw-r--r-- 2 boinc boinc     15845 Jan 29 01:09 start_atlas.sh
[2026-01-29 02:20:17] -rw------- 1 boinc boinc 184506210 Jan 29 02:19 HITS.pool.root.1
[2026-01-29 02:20:17] -rw------- 1 boinc boinc    911360 Jan 29 02:20 result.tar.gz
02:20:19 (1894042): run_atlas exited; CPU time 15686.035613
02:20:19 (1894042): called boinc_finish(0)

</stderr_txt>
]]>

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