Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:50:52 (1953474): wrapper (7.7.26015): starting
23:50:52 (1953474): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 23:50:52] Arguments: --nthreads 4
[2026-01-28 23:50:52] Threads: 4
[2026-01-28 23:50:52] Checking for CVMFS
[2026-01-28 23:50:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 23:50:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 23:50:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 23:50:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 23:50:53] 2.9.2.0 1839157 610 70832 155626 1 188 22915414 36864001 0 130560 0 318601 99.993 7115 5247 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 23:50:53] CVMFS is ok
[2026-01-28 23:50:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 23:50:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 23:50:53] Further information can be found at the LHC@home message board.
[2026-01-28 23:50:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 23:50:53] Checking for apptainer binary...
[2026-01-28 23:50:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 23:50:53] Running /usr/bin/apptainer --version
[2026-01-28 23:50:53] apptainer version 1.4.1-1.1
[2026-01-28 23:50:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 23:50:53] thA332a
[2026-01-28 23:50:53] apptainer works
[2026-01-28 23:50:53] Set ATHENA_PROC_NUMBER=4
[2026-01-28 23:50:53] Set ATHENA_CORE_NUMBER=4
[2026-01-28 23:50:53] Starting ATLAS job with PandaID=6985858587
[2026-01-28 23:50:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 01:03:30]  *** The last 200 lines of the pilot log: ***
[2026-01-29 01:03:30] 2026-01-29 00:02:58,333 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 01:03:30] 2026-01-29 00:02:58,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 01:03:30] 2026-01-29 00:02:58,333 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 01:03:30] 2026-01-29 00:02:58,333 | INFO     | job 6985858587 has completed (purged errors)
[2026-01-29 01:03:30] 2026-01-29 00:02:58,333 | INFO     | overall cleanup function is called
[2026-01-29 01:03:30] 2026-01-29 00:02:58,621 | INFO     | PID=1957600 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 01:03:30] 2026-01-29 00:02:59,340 | INFO     | --- collectZombieJob: --- 10, [1962120]
[2026-01-29 01:03:30] 2026-01-29 00:02:59,340 | INFO     | zombie collector waiting for pid 1962120
[2026-01-29 01:03:30] 2026-01-29 00:02:59,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 01:03:30] 2026-01-29 00:02:59,340 | INFO     | collected zombie processes
[2026-01-29 01:03:30] 2026-01-29 00:02:59,340 | INFO     | will attempt to kill all subprocesses of pid=1962120
[2026-01-29 01:03:30] 2026-01-29 00:02:59,383 | INFO     | process IDs to be killed: [1962120] (in reverse order)
[2026-01-29 01:03:30] 2026-01-29 00:02:59,417 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 01:03:30] 2026-01-29 00:02:59,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 01:03:30] 2026-01-29 00:02:59,419 | INFO     | did not find any defunct processes belonging to 1962120
[2026-01-29 01:03:30] 2026-01-29 00:02:59,420 | INFO     | did not find any defunct processes belonging to 1962120
[2026-01-29 01:03:30] 2026-01-29 00:02:59,420 | INFO     | ready for new job
[2026-01-29 01:03:30] 2026-01-29 00:02:59,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 01:03:30] 2026-01-29 00:02:59,421 | INFO     | **************************************
[2026-01-29 01:03:30] 2026-01-29 00:02:59,421 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 01:03:30] 2026-01-29 00:02:59,421 | INFO     | **************************************
[2026-01-29 01:03:30] 2026-01-29 00:02:59,421 | INFO     | 
[2026-01-29 01:03:30] 2026-01-29 00:02:59,421 | INFO     | architecture information:
[2026-01-29 01:03:30] 2026-01-29 00:02:59,422 | INFO     | executing command: cat /etc/os-release
[2026-01-29 01:03:30] 2026-01-29 00:02:59,436 | INFO     | cat /etc/os-release:
[2026-01-29 01:03:30] NAME="CentOS Linux"
[2026-01-29 01:03:30] VERSION="7 (Core)"
[2026-01-29 01:03:30] ID="centos"
[2026-01-29 01:03:30] ID_LIKE="rhel fedora"
[2026-01-29 01:03:30] VERSION_ID="7"
[2026-01-29 01:03:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 01:03:30] ANSI_COLOR="0;31"
[2026-01-29 01:03:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 01:03:30] HOME_URL="https://www.centos.org/"
[2026-01-29 01:03:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 01:03:30] 
[2026-01-29 01:03:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 01:03:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 01:03:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 01:03:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 01:03:30] 
[2026-01-29 01:03:30] 2026-01-29 00:02:59,436 | INFO     | **************************************
[2026-01-29 01:03:30] 2026-01-29 00:02:59,939 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 01:03:30] 2026-01-29 00:02:59,957 | INFO     | sufficient remaining disk space (333917978624 B)
[2026-01-29 01:03:30] 2026-01-29 00:02:59,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 01:03:30] 2026-01-29 00:02:59,958 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 01:03:30] 2026-01-29 00:02:59,958 | INFO     | update_server=False
[2026-01-29 01:03:30] 2026-01-29 00:02:59,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 01:03:30] 2026-01-29 00:02:59,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 01:03:30] 2026-01-29 00:02:59,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 01:03:30] 2026-01-29 00:03:00,214 | INFO     | all job control threads have been joined
[2026-01-29 01:03:30] 2026-01-29 00:03:00,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 01:03:30] 2026-01-29 00:03:00,392 | INFO     | aborting loop
[2026-01-29 01:03:30] 2026-01-29 00:03:00,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 01:03:30] 2026-01-29 00:03:00,750 | INFO     | all data control threads have been joined
[2026-01-29 01:03:30] 2026-01-29 00:03:00,929 | INFO     | all payload control threads have been joined
[2026-01-29 01:03:30] 2026-01-29 00:03:00,963 | INFO     | [job] retrieve thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:00,964 | INFO     | [job] queue monitor thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,081 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,220 | INFO     | [job] control thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,397 | INFO     | [job] job monitor thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,455 | INFO     | [payload] validate_post thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,482 | INFO     | [job] validate thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,598 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,644 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,756 | INFO     | [data] control thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,841 | INFO     | [data] copytool_in thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:01,935 | INFO     | [payload] control thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:02,518 | INFO     | [payload] failed_post thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:02,650 | INFO     | [data] copytool_out thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:03,965 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:10,842 | INFO     | job.realtimelogging is not enabled
[2026-01-29 01:03:30] 2026-01-29 00:03:11,021 | INFO     | [monitor] cgroup control has ended
[2026-01-29 01:03:30] 2026-01-29 00:03:11,848 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 01:03:30] 2026-01-29 00:03:11,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523401258816)>', '<ExcThread(monitor, started 140522454767360)>']
[2026-01-29 01:03:30] 2026-01-29 00:03:17,010 | INFO     | all workflow threads have been joined
[2026-01-29 01:03:30] 2026-01-29 00:03:17,011 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 01:03:30] 2026-01-29 00:03:17,012 | INFO     | traces error code: 0
[2026-01-29 01:03:30] 2026-01-29 00:03:17,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 01:03:30] 2026-01-29 00:03:30,746 | INFO     | PID=1957600 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 01:03:30] 2026-01-29 00:03:30,746 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 01:03:30] 2026-01-29 00:03:30,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 01:03:30] 2026-01-29 00:03:30,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 01:03:30] 2026-01-29 00:03:30,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 01:03:30] 2026-01-29 00:03:30,747 | INFO     | [monitor] control thread has ended
[2026-01-29 01:03:30] 2026-01-29 00:03:30,821 [wrapper] ==== pilot stdout END ====
[2026-01-29 01:03:30] 2026-01-29 00:03:30,825 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 01:03:30] 2026-01-29 00:03:30,829 [wrapper] pilotpid: 1957600
[2026-01-29 01:03:30] 2026-01-29 00:03:30,833 [wrapper] Pilot exit status: 0
[2026-01-29 01:03:30] 2026-01-29 00:03:30,845 [wrapper] pandaids: 6985858587
[2026-01-29 01:03:30] 2026-01-29 00:03:30,867 [wrapper] cleanup supervisor_pilot 1967517 1957601
[2026-01-29 01:03:30] 2026-01-29 00:03:30,871 [wrapper] Test setup, not cleaning
[2026-01-29 01:03:30] 2026-01-29 00:03:30,875 [wrapper] apfmon messages muted
[2026-01-29 01:03:30] 2026-01-29 00:03:30,879 [wrapper] ==== wrapper stdout END ====
[2026-01-29 01:03:30] 2026-01-29 00:03:30,883 [wrapper] ==== wrapper stderr END ====
[2026-01-29 01:03:30]  *** Error codes and diagnostics ***
[2026-01-29 01:03:30]     "exeErrorCode": 0,
[2026-01-29 01:03:30]     "exeErrorDiag": "",
[2026-01-29 01:03:30]     "pilotErrorCode": 0,
[2026-01-29 01:03:30]     "pilotErrorDiag": "",
[2026-01-29 01:03:30]  *** Listing of results directory ***
[2026-01-29 01:03:30] total 672744
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc    584422 Jan 28 16:24 pilot3.tar.gz
[2026-01-29 01:03:30] -rwx------ 1 boinc boinc     36322 Jan 28 16:24 runpilot2-wrapper.sh
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc      5111 Jan 28 16:24 queuedata.json
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc       100 Jan 28 23:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 01:03:30] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 23:50 run_atlas
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc       105 Jan 28 23:50 job.xml
[2026-01-29 01:03:30] -rw-r--r-- 2 boinc boinc 495202422 Jan 28 23:50 EVNT.48317869._000147.pool.root.1
[2026-01-29 01:03:30] -rw-r--r-- 2 boinc boinc    597752 Jan 28 23:50 input.tar.gz
[2026-01-29 01:03:30] -rw-r--r-- 2 boinc boinc     15845 Jan 28 23:50 start_atlas.sh
[2026-01-29 01:03:30] drwxrwx--x 2 boinc boinc      4096 Jan 28 23:50 shared
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc         0 Jan 28 23:50 boinc_setup_complete
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc      6370 Jan 28 23:50 init_data.xml
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc         0 Jan 28 23:50 boinc_lockfile
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc      2515 Jan 28 23:50 pandaJob.out
[2026-01-29 01:03:30] -rw------- 1 boinc boinc   1005755 Jan 28 23:51 agis_schedconf.cvmfs.json
[2026-01-29 01:03:30] -rw------- 1 boinc boinc   1516246 Jan 28 23:51 agis_ddmendpoints.agis.ALL.json
[2026-01-29 01:03:30] -rw------- 1 boinc boinc       428 Jan 28 23:51 workernode_map.json
[2026-01-29 01:03:30] drwx------ 5 boinc boinc      4096 Jan 28 23:51 pilot3
[2026-01-29 01:03:30] -rw------- 1 boinc boinc 187877131 Jan 29 01:02 HITS.48317872._007378.pool.root.1
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc       530 Jan 29 01:02 boinc_task_state.xml
[2026-01-29 01:03:30] -rw------- 1 boinc boinc      1023 Jan 29 01:02 memory_monitor_summary.json
[2026-01-29 01:03:30] -rw------- 1 boinc boinc    302820 Jan 29 01:02 log.48317872._007378.job.log.tgz.1
[2026-01-29 01:03:30] -rw------- 1 boinc boinc      6313 Jan 29 01:02 heartbeat.json
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc        27 Jan 29 01:03 wrapper_checkpoint.txt
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc      8192 Jan 29 01:03 boinc_mmap_file
[2026-01-29 01:03:30] -rw------- 1 boinc boinc       747 Jan 29 01:03 pilotlog.txt
[2026-01-29 01:03:30] -rw------- 1 boinc boinc        95 Jan 29 01:03 pilot_heartbeat.json
[2026-01-29 01:03:30] -rw------- 1 boinc boinc    638674 Jan 29 01:03 log.48317872._007378.job.log.1
[2026-01-29 01:03:30] -rw------- 1 boinc boinc       357 Jan 29 01:03 output.list
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc       620 Jan 29 01:03 runtime_log
[2026-01-29 01:03:30] -rw------- 1 boinc boinc    962560 Jan 29 01:03 result.tar.gz
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc      8901 Jan 29 01:03 runtime_log.err
[2026-01-29 01:03:30] -rw------- 1 boinc boinc       658 Jan 29 01:03 0fkMDmDaM58n9Rq4apOajLDm4fhM0noT9bVooX4SDmBLGKDmVZIx4n.diag
[2026-01-29 01:03:30] -rw-r--r-- 1 boinc boinc     11422 Jan 29 01:03 stderr.txt
[2026-01-29 01:03:30] HITS file was successfully produced:
[2026-01-29 01:03:30] -rw------- 1 boinc boinc 187877131 Jan 29 01:02 shared/HITS.pool.root.1
[2026-01-29 01:03:30]  *** Contents of shared directory: ***
[2026-01-29 01:03:30] total 668624
[2026-01-29 01:03:30] -rw-r--r-- 2 boinc boinc 495202422 Jan 28 23:50 ATLAS.root_0
[2026-01-29 01:03:30] -rw-r--r-- 2 boinc boinc    597752 Jan 28 23:50 input.tar.gz
[2026-01-29 01:03:30] -rw-r--r-- 2 boinc boinc     15845 Jan 28 23:50 start_atlas.sh
[2026-01-29 01:03:30] -rw------- 1 boinc boinc 187877131 Jan 29 01:02 HITS.pool.root.1
[2026-01-29 01:03:30] -rw------- 1 boinc boinc    962560 Jan 29 01:03 result.tar.gz
01:03:32 (1953474): run_atlas exited; CPU time 16270.644522
01:03:32 (1953474): called boinc_finish(0)

</stderr_txt>
]]>

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