Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:12:33 (99506): wrapper (7.7.26015): starting
01:12:33 (99506): wrapper: running run_atlas (--nthreads 4)
[2026-01-29 01:12:33] Arguments: --nthreads 4
[2026-01-29 01:12:33] Threads: 4
[2026-01-29 01:12:33] Checking for CVMFS
[2026-01-29 01:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 01:12:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 01:12:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 01:12:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 01:12:34] 2.9.2.0 3102 394 70008 155626 2 188 30689966 36864001 0 130560 0 268182 99.998 4169 1823 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 01:12:34] CVMFS is ok
[2026-01-29 01:12:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 01:12:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 01:12:34] Further information can be found at the LHC@home message board.
[2026-01-29 01:12:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 01:12:34] Checking for apptainer binary...
[2026-01-29 01:12:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 01:12:34] Running /usr/bin/apptainer --version
[2026-01-29 01:12:34] apptainer version 1.4.1-1.1
[2026-01-29 01:12:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 01:12:34] thA373a
[2026-01-29 01:12:34] apptainer works
[2026-01-29 01:12:34] Set ATHENA_PROC_NUMBER=4
[2026-01-29 01:12:34] Set ATHENA_CORE_NUMBER=4
[2026-01-29 01:12:34] Starting ATLAS job with PandaID=6985855911
[2026-01-29 01:12:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 02:26:11]  *** The last 200 lines of the pilot log: ***
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,217 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 02:26:11] 2026-01-29 01:25:39,218 | INFO     | job 6985855911 has completed (purged errors)
[2026-01-29 02:26:11] 2026-01-29 01:25:39,218 | INFO     | overall cleanup function is called
[2026-01-29 02:26:11] 2026-01-29 01:25:39,606 | WARNING  | process 108122 can no longer be monitored (due to stat problems) - aborting
[2026-01-29 02:26:11] 2026-01-29 01:25:39,636 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 02:26:11] 2026-01-29 01:25:39,675 | INFO     | number of running child processes to parent process 108122: 1
[2026-01-29 02:26:11] 2026-01-29 01:25:39,675 | INFO     | maximum number of monitored processes: 6
[2026-01-29 02:26:11] 2026-01-29 01:25:39,675 | INFO     | aborting job monitoring since job object (job id=6985855911) has expired
[2026-01-29 02:26:11] 2026-01-29 01:25:40,224 | INFO     | --- collectZombieJob: --- 10, [108122]
[2026-01-29 02:26:11] 2026-01-29 01:25:40,225 | INFO     | zombie collector waiting for pid 108122
[2026-01-29 02:26:11] 2026-01-29 01:25:40,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 02:26:11] 2026-01-29 01:25:40,225 | INFO     | collected zombie processes
[2026-01-29 02:26:11] 2026-01-29 01:25:40,225 | INFO     | will attempt to kill all subprocesses of pid=108122
[2026-01-29 02:26:11] 2026-01-29 01:25:40,266 | INFO     | process IDs to be killed: [108122] (in reverse order)
[2026-01-29 02:26:11] 2026-01-29 01:25:40,299 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 02:26:11] 2026-01-29 01:25:40,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 02:26:11] 2026-01-29 01:25:40,301 | INFO     | did not find any defunct processes belonging to 108122
[2026-01-29 02:26:11] 2026-01-29 01:25:40,302 | INFO     | did not find any defunct processes belonging to 108122
[2026-01-29 02:26:11] 2026-01-29 01:25:40,302 | INFO     | ready for new job
[2026-01-29 02:26:11] 2026-01-29 01:25:40,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 02:26:11] 2026-01-29 01:25:40,303 | INFO     | **************************************
[2026-01-29 02:26:11] 2026-01-29 01:25:40,303 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 02:26:11] 2026-01-29 01:25:40,303 | INFO     | **************************************
[2026-01-29 02:26:11] 2026-01-29 01:25:40,303 | INFO     | 
[2026-01-29 02:26:11] 2026-01-29 01:25:40,303 | INFO     | architecture information:
[2026-01-29 02:26:11] 2026-01-29 01:25:40,304 | INFO     | executing command: cat /etc/os-release
[2026-01-29 02:26:11] 2026-01-29 01:25:40,317 | INFO     | cat /etc/os-release:
[2026-01-29 02:26:11] NAME="CentOS Linux"
[2026-01-29 02:26:11] VERSION="7 (Core)"
[2026-01-29 02:26:11] ID="centos"
[2026-01-29 02:26:11] ID_LIKE="rhel fedora"
[2026-01-29 02:26:11] VERSION_ID="7"
[2026-01-29 02:26:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 02:26:11] ANSI_COLOR="0;31"
[2026-01-29 02:26:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 02:26:11] HOME_URL="https://www.centos.org/"
[2026-01-29 02:26:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 02:26:11] 
[2026-01-29 02:26:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 02:26:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 02:26:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 02:26:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 02:26:11] 
[2026-01-29 02:26:11] 2026-01-29 01:25:40,318 | INFO     | **************************************
[2026-01-29 02:26:11] 2026-01-29 01:25:40,821 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 02:26:11] 2026-01-29 01:25:40,837 | INFO     | sufficient remaining disk space (326224576512 B)
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | INFO     | update_server=False
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 02:26:11] 2026-01-29 01:25:40,838 | INFO     | aborting loop
[2026-01-29 02:26:11] 2026-01-29 01:25:40,995 | INFO     | all data control threads have been joined
[2026-01-29 02:26:11] 2026-01-29 01:25:41,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 02:26:11] 2026-01-29 01:25:41,843 | INFO     | [job] retrieve thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:41,844 | INFO     | [job] job monitor thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:41,844 | INFO     | [job] queue monitor thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:41,899 | INFO     | all payload control threads have been joined
[2026-01-29 02:26:11] 2026-01-29 01:25:42,001 | INFO     | [data] control thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,218 | INFO     | [payload] validate_post thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,293 | INFO     | all job control threads have been joined
[2026-01-29 02:26:11] 2026-01-29 01:25:42,409 | INFO     | [job] validate thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,483 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,507 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,596 | INFO     | [payload] failed_post thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,731 | INFO     | [data] copytool_in thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,904 | INFO     | [payload] control thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:42,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 02:26:11] 2026-01-29 01:25:43,184 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:43,299 | INFO     | [job] control thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:43,592 | INFO     | [data] copytool_out thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:46,922 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:51,246 | INFO     | job.realtimelogging is not enabled
[2026-01-29 02:26:11] 2026-01-29 01:25:52,251 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 02:26:11] 2026-01-29 01:25:52,428 | INFO     | [monitor] cgroup control has ended
[2026-01-29 02:26:11] 2026-01-29 01:25:52,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139810183358272)>', '<ExcThread(monitor, started 139808995256064)>']
[2026-01-29 02:26:11] 2026-01-29 01:25:57,826 | INFO     | all workflow threads have been joined
[2026-01-29 02:26:11] 2026-01-29 01:25:57,826 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 02:26:11] 2026-01-29 01:25:57,827 | INFO     | traces error code: 0
[2026-01-29 02:26:11] 2026-01-29 01:25:57,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 02:26:11] 2026-01-29 01:26:11,284 | INFO     | PID=103615 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-29 02:26:11] 2026-01-29 01:26:11,284 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 02:26:11] 2026-01-29 01:26:11,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 02:26:11] 2026-01-29 01:26:11,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 02:26:11] 2026-01-29 01:26:11,284 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 02:26:11] 2026-01-29 01:26:11,284 | INFO     | [monitor] control thread has ended
[2026-01-29 02:26:11] 2026-01-29 01:26:11,358 [wrapper] ==== pilot stdout END ====
[2026-01-29 02:26:11] 2026-01-29 01:26:11,362 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 02:26:11] 2026-01-29 01:26:11,367 [wrapper] pilotpid: 103615
[2026-01-29 02:26:11] 2026-01-29 01:26:11,371 [wrapper] Pilot exit status: 0
[2026-01-29 02:26:11] 2026-01-29 01:26:11,382 [wrapper] pandaids: 6985855911
[2026-01-29 02:26:11] 2026-01-29 01:26:11,404 [wrapper] cleanup supervisor_pilot  113164 103616
[2026-01-29 02:26:11] 2026-01-29 01:26:11,407 [wrapper] Test setup, not cleaning
[2026-01-29 02:26:11] 2026-01-29 01:26:11,411 [wrapper] apfmon messages muted
[2026-01-29 02:26:11] 2026-01-29 01:26:11,415 [wrapper] ==== wrapper stdout END ====
[2026-01-29 02:26:11] 2026-01-29 01:26:11,418 [wrapper] ==== wrapper stderr END ====
[2026-01-29 02:26:11]  *** Error codes and diagnostics ***
[2026-01-29 02:26:11]     "exeErrorCode": 0,
[2026-01-29 02:26:11]     "exeErrorDiag": "",
[2026-01-29 02:26:11]     "pilotErrorCode": 0,
[2026-01-29 02:26:11]     "pilotErrorDiag": "",
[2026-01-29 02:26:11]  *** Listing of results directory ***
[2026-01-29 02:26:11] total 673736
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc    584422 Jan 28 14:49 pilot3.tar.gz
[2026-01-29 02:26:11] -rwx------ 1 boinc boinc     36322 Jan 28 14:52 runpilot2-wrapper.sh
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc      5111 Jan 28 14:56 queuedata.json
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc       100 Jan 29 01:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 02:26:11] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 01:12 run_atlas
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc       105 Jan 29 01:12 job.xml
[2026-01-29 02:26:11] -rw-r--r-- 2 boinc boinc 500140358 Jan 29 01:12 EVNT.48317869._000133.pool.root.1
[2026-01-29 02:26:11] -rw-r--r-- 2 boinc boinc    597754 Jan 29 01:12 input.tar.gz
[2026-01-29 02:26:11] -rw-r--r-- 2 boinc boinc     15845 Jan 29 01:12 start_atlas.sh
[2026-01-29 02:26:11] drwxrwx--x 2 boinc boinc      4096 Jan 29 01:12 shared
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc         0 Jan 29 01:12 boinc_setup_complete
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc      6377 Jan 29 01:12 init_data.xml
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc         0 Jan 29 01:12 boinc_lockfile
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc      2514 Jan 29 01:12 pandaJob.out
[2026-01-29 02:26:11] -rw------- 1 boinc boinc   1005755 Jan 29 01:12 agis_schedconf.cvmfs.json
[2026-01-29 02:26:11] -rw------- 1 boinc boinc   1516246 Jan 29 01:12 agis_ddmendpoints.agis.ALL.json
[2026-01-29 02:26:11] -rw------- 1 boinc boinc       428 Jan 29 01:12 workernode_map.json
[2026-01-29 02:26:11] drwx------ 5 boinc boinc      4096 Jan 29 01:12 pilot3
[2026-01-29 02:26:11] -rw------- 1 boinc boinc 184003366 Jan 29 02:25 HITS.48317872._006651.pool.root.1
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc       530 Jan 29 02:25 boinc_task_state.xml
[2026-01-29 02:26:11] -rw------- 1 boinc boinc      1020 Jan 29 02:25 memory_monitor_summary.json
[2026-01-29 02:26:11] -rw------- 1 boinc boinc    272011 Jan 29 02:25 log.48317872._006651.job.log.tgz.1
[2026-01-29 02:26:11] -rw------- 1 boinc boinc      6311 Jan 29 02:25 heartbeat.json
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc        27 Jan 29 02:25 wrapper_checkpoint.txt
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc      8192 Jan 29 02:25 boinc_mmap_file
[2026-01-29 02:26:11] -rw------- 1 boinc boinc        95 Jan 29 02:26 pilot_heartbeat.json
[2026-01-29 02:26:11] -rw------- 1 boinc boinc       746 Jan 29 02:26 pilotlog.txt
[2026-01-29 02:26:11] -rw------- 1 boinc boinc    646080 Jan 29 02:26 log.48317872._006651.job.log.1
[2026-01-29 02:26:11] -rw------- 1 boinc boinc       357 Jan 29 02:26 output.list
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc       620 Jan 29 02:26 runtime_log
[2026-01-29 02:26:11] -rw------- 1 boinc boinc    931840 Jan 29 02:26 result.tar.gz
[2026-01-29 02:26:11] -rw------- 1 boinc boinc       658 Jan 29 02:26 L6PLDmF9K58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYIGKDmeVG1Tn.diag
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc      8901 Jan 29 02:26 runtime_log.err
[2026-01-29 02:26:11] -rw-r--r-- 1 boinc boinc     12323 Jan 29 02:26 stderr.txt
[2026-01-29 02:26:11] HITS file was successfully produced:
[2026-01-29 02:26:11] -rw------- 1 boinc boinc 184003366 Jan 29 02:25 shared/HITS.pool.root.1
[2026-01-29 02:26:11]  *** Contents of shared directory: ***
[2026-01-29 02:26:11] total 669632
[2026-01-29 02:26:11] -rw-r--r-- 2 boinc boinc 500140358 Jan 29 01:12 ATLAS.root_0
[2026-01-29 02:26:11] -rw-r--r-- 2 boinc boinc    597754 Jan 29 01:12 input.tar.gz
[2026-01-29 02:26:11] -rw-r--r-- 2 boinc boinc     15845 Jan 29 01:12 start_atlas.sh
[2026-01-29 02:26:11] -rw------- 1 boinc boinc 184003366 Jan 29 02:25 HITS.pool.root.1
[2026-01-29 02:26:11] -rw------- 1 boinc boinc    931840 Jan 29 02:26 result.tar.gz
02:26:13 (99506): run_atlas exited; CPU time 16500.676121
02:26:13 (99506): called boinc_finish(0)

</stderr_txt>
]]>

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