Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-28 09:57:39 (9812): vboxwrapper version 26210
2026-01-28 09:57:39 (9812): BOINC client version: 8.2.8
2026-01-28 09:57:40 (9812): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2026-01-28 09:57:40 (9812): Successfully copied 'init_data.xml' to the shared directory.
2026-01-28 09:57:41 (9812): Create VM. (boinc_52933ec7762ba338, slot#4)
2026-01-28 09:57:42 (9812): Setting Memory Size for VM. (4300MB)
2026-01-28 09:57:42 (9812): Setting CPU Count for VM. (3)
2026-01-28 09:57:43 (9812): Setting Chipset Options for VM.
2026-01-28 09:57:43 (9812): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-28 09:57:44 (9812): Setting Boot Options for VM.
2026-01-28 09:57:44 (9812): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-28 09:57:45 (9812): Enabling VM Network Access.
2026-01-28 09:57:45 (9812): Disabling USB Support for VM.
2026-01-28 09:57:46 (9812): Disabling COM Port Support for VM.
2026-01-28 09:57:46 (9812): Disabling LPT Port Support for VM.
2026-01-28 09:57:46 (9812): Disabling Audio Support for VM.
2026-01-28 09:57:47 (9812): Disabling Clipboard Support for VM.
2026-01-28 09:57:47 (9812): Disabling Drag and Drop Support for VM.
2026-01-28 09:57:47 (9812): Adding storage controller(s) to VM.
2026-01-28 09:57:48 (9812): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-28 09:57:50 (9812): Adding VirtualBox Guest Additions to VM.
2026-01-28 09:57:50 (9812): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-28 09:57:50 (9812): forwarding host port 60027 to guest port 80
2026-01-28 09:57:51 (9812): Enabling remote desktop for VM.
2026-01-28 09:57:52 (9812): Enabling shared directory for VM.
2026-01-28 09:57:53 (9812): Starting VM using VBoxManage interface. (boinc_52933ec7762ba338, slot#4)
2026-01-28 09:58:05 (9812): Successfully started VM. (PID = '15748')
2026-01-28 09:58:05 (9812): Reporting VM Process ID to BOINC.
2026-01-28 09:58:05 (9812): Guest Log: BIOS: VirtualBox 7.1.8
2026-01-28 09:58:05 (9812): Guest Log: CPUID EDX: 0x178bfbff
2026-01-28 09:58:05 (9812): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-28 09:58:05 (9812): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-28 09:58:05 (9812): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-28 09:58:05 (9812): Detected: Web Application Enabled (http://localhost:60027)
2026-01-28 09:58:05 (9812): Detected: Remote Desktop Enabled (localhost:60028)
2026-01-28 09:58:05 (9812): Preference change detected
2026-01-28 09:58:05 (9812): Setting CPU throttle for VM. (100%)
2026-01-28 09:58:05 (9812): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-28 09:58:07 (9812): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-28 09:58:07 (9812): Guest Log: BIOS: Booting from Hard Disk...
2026-01-28 09:58:11 (9812): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-28 09:58:11 (9812): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-28 09:58:11 (9812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-28 09:58:22 (9812): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-28 09:58:22 (9812): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-28 09:58:42 (9812): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.003841 main     Log opened 2026-01-28T09:58:40.693973000Z
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.007160 main     OS Product: Linux
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.010103 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.011123 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.012043 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.012062 main     Process ID: 1298
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.012066 main     Package type: LINUX_64BITS_GENERIC
2026-01-28 09:58:42 (9812): Guest Log: 00:00:00.024844 main     5.2.32 r132073 started. Verbose level = 0
2026-01-28 09:58:43 (9812): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-28 09:58:43 (9812): Guest Log: [INFO] Mounting shared directory
2026-01-28 09:58:43 (9812): Guest Log: [INFO] Checking for init_data.xml
2026-01-28 09:58:52 (9812): Guest Log: 00:00:10.061369 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 629 442 000ns (GuestNow=1 769 623 132 374 125 000 ns GuestLast=1 769 594 320 744 683 000 ns fSetTimeLastLoop=true )
2026-01-28 09:59:09 (9812): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-28 09:59:09 (9812): Guest Log: [INFO] Detected branch: prod
2026-01-28 09:59:10 (9812): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-28 09:59:10 (9812): Guest Log: Copying input files
2026-01-28 09:59:22 (9812): Guest Log: Copied input files into RunAtlas.
2026-01-28 09:59:22 (9812): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-28 09:59:22 (9812): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-28 09:59:22 (9812): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-28 09:59:23 (9812): Guest Log: Further information can be found at the LHC@home message board.
2026-01-28 09:59:35 (9812): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-28 09:59:36 (9812): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-28 09:59:36 (9812): Guest Log: 2.6.3.0 1598 0 30136 155622 3 1 3117739 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-28 09:59:39 (9812): Guest Log: copied the webapp to /var/www
2026-01-28 09:59:39 (9812): Guest Log: ATHENA_PROC_NUMBER=3
2026-01-28 09:59:39 (9812): Guest Log: ATHENA_CORE_NUMBER=3
2026-01-28 09:59:40 (9812): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-28 09:59:40 (9812): Guest Log:  *** Starting ATLAS job. (PandaID=6985350463 taskID=48317872) ***
2026-01-28 11:39:21 (9812): Status Report: Elapsed Time: '6000.000000'
2026-01-28 11:39:21 (9812): Status Report: CPU Time: '13213.218750'
2026-01-28 13:20:57 (9812): Status Report: Elapsed Time: '12000.000000'
2026-01-28 13:20:57 (9812): Status Report: CPU Time: '29112.437500'
2026-01-28 15:02:53 (9812): Status Report: Elapsed Time: '18000.464739'
2026-01-28 15:02:53 (9812): Status Report: CPU Time: '45076.000000'
2026-01-28 16:44:28 (9812): Status Report: Elapsed Time: '24000.464739'
2026-01-28 16:44:28 (9812): Status Report: CPU Time: '61028.062500'
2026-01-28 18:25:55 (9812): Status Report: Elapsed Time: '30000.464739'
2026-01-28 18:25:55 (9812): Status Report: CPU Time: '76964.328125'
2026-01-28 20:07:37 (9812): Status Report: Elapsed Time: '36000.666584'
2026-01-28 20:07:37 (9812): Status Report: CPU Time: '92948.125000'
2026-01-28 21:49:06 (9812): Status Report: Elapsed Time: '42000.666584'
2026-01-28 21:49:06 (9812): Status Report: CPU Time: '108896.953125'
2026-01-28 23:10:09 (9812): Guest Log:  *** Job finished ***
2026-01-28 23:10:09 (9812): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:09:57,123 | INFO     | all workflow threads have been joined
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:09:57,131 | INFO     | end of generic workflow (traces error code: 0)
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:09:57,139 | INFO     | traces error code: 0
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:09:57,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:05,832 | INFO     | PID=6017 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:05,833 | INFO     | found 0 job(s) in 20 queues
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:05,833 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:05,833 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:05,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:05,833 | INFO     | [monitor] control thread has ended
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:06,316 [wrapper] ==== pilot stdout END ====
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:06,329 [wrapper] ==== wrapper stdout RESUME ====
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:06,343 [wrapper] pilotpid: 6017
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:06,362 [wrapper] Pilot exit status: 0
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:07,041 [wrapper] pandaids: 6985350463
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:07,129 [wrapper] cleanup supervisor_pilot  6210 6018
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:07,138 [wrapper] Test setup, not cleaning
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:07,145 [wrapper] apfmon messages muted
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:07,151 [wrapper] ==== wrapper stdout END ====
2026-01-28 23:10:09 (9812): Guest Log: 2026-01-29 07:10:07,156 [wrapper] ==== wrapper stderr END ====
2026-01-28 23:10:09 (9812): Guest Log:  *** Error codes and diagnostics ***
2026-01-28 23:10:09 (9812): Guest Log:     "exeErrorCode": 0,
2026-01-28 23:10:09 (9812): Guest Log:     "exeErrorDiag": "",
2026-01-28 23:10:09 (9812): Guest Log:     "pilotErrorCode": 0,
2026-01-28 23:10:09 (9812): Guest Log:     "pilotErrorDiag": "",
2026-01-28 23:10:09 (9812): Guest Log:  *** Listing of results directory ***
2026-01-28 23:10:09 (9812): Guest Log: total 201420
2026-01-28 23:10:09 (9812): Guest Log: -rw-r--r--. 1 atlas atlas    584422 Jan 28 13:49 pilot3.tar.gz
2026-01-28 23:10:09 (9812): Guest Log: -rwx------. 1 atlas atlas     36322 Jan 28 13:52 runpilot2-wrapper.sh
2026-01-28 23:10:09 (9812): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jan 28 13:55 queuedata.json
2026-01-28 23:10:09 (9812): Guest Log: -rwxr-xr-x. 1 atlas atlas      8952 Jan 28 17:59 init_data.xml
2026-01-28 23:10:09 (9812): Guest Log: -rwxr-xr-x. 1 atlas atlas    597757 Jan 28 17:59 input.tar.gz
2026-01-28 23:10:09 (9812): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Jan 28 17:59 start_atlas.sh
2026-01-28 23:10:09 (9812): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 28 17:59 EVNT.48317869._000126.pool.root.1 -> /data/./ATLAS.root_0
2026-01-28 23:10:09 (9812): Guest Log: -rw-r--r--. 1 atlas atlas      2515 Jan 28 17:59 pandaJob.out
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas   1005192 Jan 28 18:02 agis_schedconf.cvmfs.json
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas       409 Jan 28 18:02 workernode_map.json
2026-01-28 23:10:09 (9812): Guest Log: drwx------. 5 atlas atlas      4096 Jan 28 18:03 pilot3
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas 188005742 Jan 29 07:07 HITS.48317872._006307.pool.root.1
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas      1026 Jan 29 07:09 memory_monitor_summary.json
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas        95 Jan 29 07:09 pilot_heartbeat.json
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas   1516246 Jan 29 07:09 agis_ddmendpoints.agis.ALL.json
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas    867406 Jan 29 07:09 log.48317872._006307.job.log.tgz.1
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas      6326 Jan 29 07:09 heartbeat.json
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas       744 Jan 29 07:10 pilotlog.txt
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas   6323550 Jan 29 07:10 log.48317872._006307.job.log.1
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas       357 Jan 29 07:10 output.list
2026-01-28 23:10:09 (9812): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 29 07:10 runtime_log
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas   7208960 Jan 29 07:10 result.tar.gz
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas       656 Jan 29 07:10 tFyKDm38K58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBIGKDmywo5Ko.diag
2026-01-28 23:10:09 (9812): Guest Log: -rw-r--r--. 1 atlas atlas      8730 Jan 29 07:10 runtime_log.err
2026-01-28 23:10:09 (9812): Guest Log: Looking for outputfile HITS.48317872._006307.pool.root.1
2026-01-28 23:10:09 (9812): Guest Log: HITS file was successfully produced
2026-01-28 23:10:09 (9812): Guest Log: -rw-------. 1 atlas atlas 188005742 Jan 29 07:07 /home/atlas/RunAtlas/HITS.48317872._006307.pool.root.1
2026-01-28 23:10:13 (9812): Guest Log: Successfully finished the ATLAS job!
2026-01-28 23:10:13 (9812): Guest Log: Copying the results back to the shared directory!
2026-01-28 23:10:14 (9812): Guest Log:  *** Contents of shared directory: ***
2026-01-28 23:10:14 (9812): Guest Log: total 672472
2026-01-28 23:10:14 (9812): Guest Log: -rwxrwxrwx. 1 root root 492765704 Jan 28 17:57 ATLAS.root_0
2026-01-28 23:10:14 (9812): Guest Log: -rwxrwxrwx. 1 root root 188005742 Jan 29 07:10 HITS.pool.root.1
2026-01-28 23:10:14 (9812): Guest Log: -rwxrwxrwx. 1 root root      8952 Jan 28 17:57 init_data.xml
2026-01-28 23:10:14 (9812): Guest Log: -rwxrwxrwx. 1 root root    597757 Jan 28 17:53 input.tar.gz
2026-01-28 23:10:14 (9812): Guest Log: -rwxrwxrwx. 1 root root   7208960 Jan 29 07:10 result.tar.gz
2026-01-28 23:10:14 (9812): Guest Log: -rwxrwxrwx. 1 root root     15845 Jan 28 17:53 start_atlas.sh
2026-01-28 23:10:14 (9812): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-28 23:10:14 (9812): VM Completion File Detected.
2026-01-28 23:10:14 (9812): Powering off VM.
2026-01-28 23:10:17 (9812): Successfully stopped VM.
2026-01-28 23:10:17 (9812): Deregistering VM. (boinc_52933ec7762ba338, slot#4)
2026-01-28 23:10:17 (9812): Removing network bandwidth throttle group from VM.
2026-01-28 23:10:18 (9812): Removing VM from VirtualBox.
2026-01-28 23:10:23 (9812): called boinc_finish(0)

</stderr_txt>
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