Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:09 (1624209): wrapper (7.7.26015): starting
23:57:09 (1624209): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 23:57:09] Arguments: --nthreads 4
[2026-01-28 23:57:09] Threads: 4
[2026-01-28 23:57:09] Checking for CVMFS
[2026-01-28 23:57:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 23:57:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 23:57:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 23:57:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 23:57:10] 2.9.2.0 1536777 518 79152 155626 1 253 22498694 36864000 0 130560 0 263773 99.991 7095 4398 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 23:57:10] CVMFS is ok
[2026-01-28 23:57:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 23:57:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 23:57:10] Further information can be found at the LHC@home message board.
[2026-01-28 23:57:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 23:57:10] Checking for apptainer binary...
[2026-01-28 23:57:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 23:57:10] Running /usr/bin/apptainer --version
[2026-01-28 23:57:10] apptainer version 1.4.1-1.1
[2026-01-28 23:57:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 23:57:10] magicA244a
[2026-01-28 23:57:10] apptainer works
[2026-01-28 23:57:10] Set ATHENA_PROC_NUMBER=4
[2026-01-28 23:57:10] Set ATHENA_CORE_NUMBER=4
[2026-01-28 23:57:10] Starting ATLAS job with PandaID=6985856553
[2026-01-28 23:57:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 01:01:35]  *** The last 200 lines of the pilot log: ***
[2026-01-29 01:01:35] 2026-01-29 00:01:03,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 01:01:35] 2026-01-29 00:01:03,833 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 01:01:35] 2026-01-29 00:01:03,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 01:01:35] 2026-01-29 00:01:03,833 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 01:01:35] 2026-01-29 00:01:03,833 | INFO     | job 6985856553 has completed (purged errors)
[2026-01-29 01:01:35] 2026-01-29 00:01:03,834 | INFO     | overall cleanup function is called
[2026-01-29 01:01:35] 2026-01-29 00:01:04,840 | INFO     | --- collectZombieJob: --- 10, [1632811]
[2026-01-29 01:01:35] 2026-01-29 00:01:04,840 | INFO     | zombie collector waiting for pid 1632811
[2026-01-29 01:01:35] 2026-01-29 00:01:04,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 01:01:35] 2026-01-29 00:01:04,841 | INFO     | collected zombie processes
[2026-01-29 01:01:35] 2026-01-29 00:01:04,841 | INFO     | will attempt to kill all subprocesses of pid=1632811
[2026-01-29 01:01:35] 2026-01-29 00:01:04,884 | INFO     | process IDs to be killed: [1632811] (in reverse order)
[2026-01-29 01:01:35] 2026-01-29 00:01:04,912 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 01:01:35] 2026-01-29 00:01:04,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 01:01:35] 2026-01-29 00:01:04,913 | INFO     | did not find any defunct processes belonging to 1632811
[2026-01-29 01:01:35] 2026-01-29 00:01:04,914 | INFO     | did not find any defunct processes belonging to 1632811
[2026-01-29 01:01:35] 2026-01-29 00:01:04,915 | INFO     | ready for new job
[2026-01-29 01:01:35] 2026-01-29 00:01:04,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 01:01:35] 2026-01-29 00:01:04,915 | INFO     | **************************************
[2026-01-29 01:01:35] 2026-01-29 00:01:04,915 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 01:01:35] 2026-01-29 00:01:04,915 | INFO     | **************************************
[2026-01-29 01:01:35] 2026-01-29 00:01:04,915 | INFO     | 
[2026-01-29 01:01:35] 2026-01-29 00:01:04,916 | INFO     | architecture information:
[2026-01-29 01:01:35] 2026-01-29 00:01:04,916 | INFO     | executing command: cat /etc/os-release
[2026-01-29 01:01:35] 2026-01-29 00:01:04,925 | INFO     | cat /etc/os-release:
[2026-01-29 01:01:35] NAME="CentOS Linux"
[2026-01-29 01:01:35] VERSION="7 (Core)"
[2026-01-29 01:01:35] ID="centos"
[2026-01-29 01:01:35] ID_LIKE="rhel fedora"
[2026-01-29 01:01:35] VERSION_ID="7"
[2026-01-29 01:01:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 01:01:35] ANSI_COLOR="0;31"
[2026-01-29 01:01:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 01:01:35] HOME_URL="https://www.centos.org/"
[2026-01-29 01:01:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 01:01:35] 
[2026-01-29 01:01:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 01:01:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 01:01:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 01:01:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 01:01:35] 
[2026-01-29 01:01:35] 2026-01-29 00:01:04,926 | INFO     | **************************************
[2026-01-29 01:01:35] 2026-01-29 00:01:05,429 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 01:01:35] 2026-01-29 00:01:05,443 | INFO     | sufficient remaining disk space (334352089088 B)
[2026-01-29 01:01:35] 2026-01-29 00:01:05,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 01:01:35] 2026-01-29 00:01:05,443 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 01:01:35] 2026-01-29 00:01:05,443 | INFO     | update_server=False
[2026-01-29 01:01:35] 2026-01-29 00:01:05,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 01:01:35] 2026-01-29 00:01:05,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 01:01:35] 2026-01-29 00:01:05,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 01:01:35] 2026-01-29 00:01:05,870 | INFO     | aborting loop
[2026-01-29 01:01:35] 2026-01-29 00:01:06,011 | INFO     | all data control threads have been joined
[2026-01-29 01:01:35] 2026-01-29 00:01:06,449 | INFO     | [job] queue monitor thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:06,449 | INFO     | [job] retrieve thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:06,496 | INFO     | all payload control threads have been joined
[2026-01-29 01:01:35] 2026-01-29 00:01:06,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 01:01:35] 2026-01-29 00:01:06,735 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:06,876 | INFO     | [job] job monitor thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,016 | INFO     | [data] control thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 01:01:35] 2026-01-29 00:01:07,108 | INFO     | all job control threads have been joined
[2026-01-29 01:01:35] 2026-01-29 00:01:07,264 | INFO     | [job] validate thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,351 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,365 | INFO     | [payload] validate_post thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,448 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,501 | INFO     | [data] copytool_in thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,502 | INFO     | [payload] control thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:07,723 | INFO     | [payload] failed_post thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:08,114 | INFO     | [job] control thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:08,520 | INFO     | [data] copytool_out thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:11,093 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:15,797 | INFO     | job.realtimelogging is not enabled
[2026-01-29 01:01:35] 2026-01-29 00:01:16,803 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 01:01:35] 2026-01-29 00:01:25,568 | INFO     | [monitor] cgroup control has ended
[2026-01-29 01:01:35] 2026-01-29 00:01:27,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140486087395136)>', '<ExcThread(monitor, started 140485595215616)>']
[2026-01-29 01:01:35] 2026-01-29 00:01:32,303 | INFO     | all workflow threads have been joined
[2026-01-29 01:01:35] 2026-01-29 00:01:32,303 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 01:01:35] 2026-01-29 00:01:32,303 | INFO     | traces error code: 0
[2026-01-29 01:01:35] 2026-01-29 00:01:32,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 01:01:35] 2026-01-29 00:01:35,835 | INFO     | PID=1628300 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 01:01:35] 2026-01-29 00:01:35,836 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 01:01:35] 2026-01-29 00:01:35,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 01:01:35] 2026-01-29 00:01:35,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 01:01:35] 2026-01-29 00:01:35,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 01:01:35] 2026-01-29 00:01:35,836 | INFO     | [monitor] control thread has ended
[2026-01-29 01:01:35] 2026-01-29 00:01:35,885 [wrapper] ==== pilot stdout END ====
[2026-01-29 01:01:35] 2026-01-29 00:01:35,888 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 01:01:35] 2026-01-29 00:01:35,890 [wrapper] pilotpid: 1628300
[2026-01-29 01:01:35] 2026-01-29 00:01:35,893 [wrapper] Pilot exit status: 0
[2026-01-29 01:01:35] 2026-01-29 00:01:35,900 [wrapper] pandaids: 6985856553
[2026-01-29 01:01:35] 2026-01-29 00:01:35,918 [wrapper] cleanup supervisor_pilot 1638180 1628301
[2026-01-29 01:01:35] 2026-01-29 00:01:35,921 [wrapper] Test setup, not cleaning
[2026-01-29 01:01:35] 2026-01-29 00:01:35,923 [wrapper] apfmon messages muted
[2026-01-29 01:01:35] 2026-01-29 00:01:35,926 [wrapper] ==== wrapper stdout END ====
[2026-01-29 01:01:35] 2026-01-29 00:01:35,928 [wrapper] ==== wrapper stderr END ====
[2026-01-29 01:01:35]  *** Error codes and diagnostics ***
[2026-01-29 01:01:35]     "exeErrorCode": 0,
[2026-01-29 01:01:35]     "exeErrorDiag": "",
[2026-01-29 01:01:35]     "pilotErrorCode": 0,
[2026-01-29 01:01:35]     "pilotErrorDiag": "",
[2026-01-29 01:01:35]  *** Listing of results directory ***
[2026-01-29 01:01:35] total 672272
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc    584422 Jan 28 14:49 pilot3.tar.gz
[2026-01-29 01:01:35] -rwx------ 1 boinc boinc     36322 Jan 28 14:50 runpilot2-wrapper.sh
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc      5111 Jan 28 14:50 queuedata.json
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc       100 Jan 28 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 01:01:35] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 23:57 run_atlas
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc       105 Jan 28 23:57 job.xml
[2026-01-29 01:01:35] -rw-r--r-- 2 boinc boinc 497971138 Jan 28 23:57 EVNT.48317869._000138.pool.root.1
[2026-01-29 01:01:35] -rw-r--r-- 2 boinc boinc    597757 Jan 28 23:57 input.tar.gz
[2026-01-29 01:01:35] -rw-r--r-- 2 boinc boinc     15845 Jan 28 23:57 start_atlas.sh
[2026-01-29 01:01:35] drwxrwx--x 2 boinc boinc      4096 Jan 28 23:57 shared
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc         0 Jan 28 23:57 boinc_setup_complete
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc      6438 Jan 28 23:57 init_data.xml
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc         0 Jan 28 23:57 boinc_lockfile
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc      2513 Jan 28 23:57 pandaJob.out
[2026-01-29 01:01:35] -rw------- 1 boinc boinc   1005755 Jan 28 23:57 agis_schedconf.cvmfs.json
[2026-01-29 01:01:35] -rw------- 1 boinc boinc   1516246 Jan 28 23:57 agis_ddmendpoints.agis.ALL.json
[2026-01-29 01:01:35] -rw------- 1 boinc boinc       427 Jan 28 23:57 workernode_map.json
[2026-01-29 01:01:35] drwx------ 5 boinc boinc      4096 Jan 28 23:57 pilot3
[2026-01-29 01:01:35] -rw------- 1 boinc boinc        95 Jan 29 01:00 pilot_heartbeat.json
[2026-01-29 01:01:35] -rw------- 1 boinc boinc 184886536 Jan 29 01:00 HITS.48317872._006881.pool.root.1
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc       530 Jan 29 01:00 boinc_task_state.xml
[2026-01-29 01:01:35] -rw------- 1 boinc boinc      1019 Jan 29 01:00 memory_monitor_summary.json
[2026-01-29 01:01:35] -rw------- 1 boinc boinc    238465 Jan 29 01:00 log.48317872._006881.job.log.tgz.1
[2026-01-29 01:01:35] -rw------- 1 boinc boinc      6306 Jan 29 01:01 heartbeat.json
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc        27 Jan 29 01:01 wrapper_checkpoint.txt
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc      8192 Jan 29 01:01 boinc_mmap_file
[2026-01-29 01:01:35] -rw------- 1 boinc boinc       747 Jan 29 01:01 pilotlog.txt
[2026-01-29 01:01:35] -rw------- 1 boinc boinc    572975 Jan 29 01:01 log.48317872._006881.job.log.1
[2026-01-29 01:01:35] -rw------- 1 boinc boinc       357 Jan 29 01:01 output.list
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc       620 Jan 29 01:01 runtime_log
[2026-01-29 01:01:35] -rw------- 1 boinc boinc    829440 Jan 29 01:01 result.tar.gz
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc      8916 Jan 29 01:01 runtime_log.err
[2026-01-29 01:01:35] -rw------- 1 boinc boinc       661 Jan 29 01:01 5OUMDmH7K58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBFGKDmN4hPbm.diag
[2026-01-29 01:01:35] -rw-r--r-- 1 boinc boinc     11304 Jan 29 01:01 stderr.txt
[2026-01-29 01:01:35] HITS file was successfully produced:
[2026-01-29 01:01:35] -rw------- 1 boinc boinc 184886536 Jan 29 01:00 shared/HITS.pool.root.1
[2026-01-29 01:01:35]  *** Contents of shared directory: ***
[2026-01-29 01:01:35] total 668276
[2026-01-29 01:01:35] -rw-r--r-- 2 boinc boinc 497971138 Jan 28 23:57 ATLAS.root_0
[2026-01-29 01:01:35] -rw-r--r-- 2 boinc boinc    597757 Jan 28 23:57 input.tar.gz
[2026-01-29 01:01:35] -rw-r--r-- 2 boinc boinc     15845 Jan 28 23:57 start_atlas.sh
[2026-01-29 01:01:35] -rw------- 1 boinc boinc 184886536 Jan 29 01:00 HITS.pool.root.1
[2026-01-29 01:01:35] -rw------- 1 boinc boinc    829440 Jan 29 01:01 result.tar.gz
01:01:37 (1624209): run_atlas exited; CPU time 14267.842663
01:01:37 (1624209): called boinc_finish(0)

</stderr_txt>
]]>

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