Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:24:12 (238269): wrapper (7.7.26015): starting
22:24:12 (238269): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 22:24:12] Arguments: --nthreads 3
[2026-01-28 22:24:12] Threads: 3
[2026-01-28 22:24:12] Checking for CVMFS
[2026-01-28 22:24:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 22:24:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 22:24:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 22:24:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 22:24:13] 2.9.2.0 138496 412 53388 155626 0 50 17957162 36864000 0 130560 0 161003 99.988 6977 6983 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 22:24:13] CVMFS is ok
[2026-01-28 22:24:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 22:24:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 22:24:13] Further information can be found at the LHC@home message board.
[2026-01-28 22:24:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 22:24:13] Checking for apptainer binary...
[2026-01-28 22:24:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 22:24:13] Running /usr/bin/apptainer --version
[2026-01-28 22:24:13] apptainer version 1.4.1-1.1
[2026-01-28 22:24:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 22:24:13] atlasA221b
[2026-01-28 22:24:13] apptainer works
[2026-01-28 22:24:13] Set ATHENA_PROC_NUMBER=3
[2026-01-28 22:24:13] Set ATHENA_CORE_NUMBER=3
[2026-01-28 22:24:13] Starting ATLAS job with PandaID=6985621771
[2026-01-28 22:24:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 00:04:40]  *** The last 200 lines of the pilot log: ***
[2026-01-29 00:04:40] 2026-01-28 23:03:40,690 | INFO     | collected zombie processes
[2026-01-29 00:04:40] 2026-01-28 23:03:40,690 | INFO     | will attempt to kill all subprocesses of pid=246786
[2026-01-29 00:04:40] 2026-01-28 23:03:40,748 | INFO     | process IDs to be killed: [246786] (in reverse order)
[2026-01-29 00:04:40] 2026-01-28 23:03:40,778 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 00:04:40] 2026-01-28 23:03:40,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 00:04:40] 2026-01-28 23:03:40,780 | INFO     | did not find any defunct processes belonging to 246786
[2026-01-29 00:04:40] 2026-01-28 23:03:40,781 | INFO     | did not find any defunct processes belonging to 246786
[2026-01-29 00:04:40] 2026-01-28 23:03:40,781 | INFO     | ready for new job
[2026-01-29 00:04:40] 2026-01-28 23:03:40,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 00:04:40] 2026-01-28 23:03:40,782 | INFO     | **************************************
[2026-01-29 00:04:40] 2026-01-28 23:03:40,782 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 00:04:40] 2026-01-28 23:03:40,782 | INFO     | **************************************
[2026-01-29 00:04:40] 2026-01-28 23:03:40,782 | INFO     | 
[2026-01-29 00:04:40] 2026-01-28 23:03:40,782 | INFO     | architecture information:
[2026-01-29 00:04:40] 2026-01-28 23:03:40,782 | INFO     | executing command: cat /etc/os-release
[2026-01-29 00:04:40] 2026-01-28 23:03:40,792 | INFO     | cat /etc/os-release:
[2026-01-29 00:04:40] NAME="CentOS Linux"
[2026-01-29 00:04:40] VERSION="7 (Core)"
[2026-01-29 00:04:40] ID="centos"
[2026-01-29 00:04:40] ID_LIKE="rhel fedora"
[2026-01-29 00:04:40] VERSION_ID="7"
[2026-01-29 00:04:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 00:04:40] ANSI_COLOR="0;31"
[2026-01-29 00:04:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 00:04:40] HOME_URL="https://www.centos.org/"
[2026-01-29 00:04:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 00:04:40] 
[2026-01-29 00:04:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 00:04:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 00:04:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 00:04:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 00:04:40] 
[2026-01-29 00:04:40] 2026-01-28 23:03:40,792 | INFO     | **************************************
[2026-01-29 00:04:40] 2026-01-28 23:03:41,296 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 00:04:40] 2026-01-28 23:03:41,332 | INFO     | sufficient remaining disk space (339863404544 B)
[2026-01-29 00:04:40] 2026-01-28 23:03:41,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 00:04:40] 2026-01-28 23:03:41,333 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 00:04:40] 2026-01-28 23:03:41,333 | INFO     | update_server=False
[2026-01-29 00:04:40] 2026-01-28 23:03:41,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 00:04:40] 2026-01-28 23:03:41,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 00:04:40] 2026-01-28 23:03:41,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 00:04:40] 2026-01-28 23:03:41,334 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 00:04:40] 2026-01-28 23:03:41,335 | INFO     | aborting loop
[2026-01-29 00:04:40] 2026-01-28 23:03:42,031 | INFO     | all payload control threads have been joined
[2026-01-29 00:04:40] 2026-01-28 23:03:42,046 | INFO     | all data control threads have been joined
[2026-01-29 00:04:40] 2026-01-28 23:03:42,338 | INFO     | [job] retrieve thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,339 | INFO     | [job] queue monitor thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,340 | INFO     | [job] job monitor thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,387 | INFO     | [payload] failed_post thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,529 | INFO     | all job control threads have been joined
[2026-01-29 00:04:40] 2026-01-28 23:03:42,564 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 00:04:40] 2026-01-28 23:03:42,844 | INFO     | [job] validate thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,888 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,983 | INFO     | [data] copytool_in thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:42,988 | INFO     | [payload] validate_post thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:43,037 | INFO     | [payload] control thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:43,044 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:43,051 | INFO     | [data] control thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:43,535 | INFO     | [job] control thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:44,651 | INFO     | [data] copytool_out thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:45,339 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:03:51,569 | INFO     | job.realtimelogging is not enabled
[2026-01-29 00:04:40] 2026-01-28 23:03:52,575 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 00:04:40] 2026-01-28 23:04:11,883 | INFO     | PID=242325 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-29 00:04:40] 2026-01-28 23:04:11,883 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 00:04:40] 2026-01-28 23:04:11,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 00:04:40] 2026-01-28 23:04:11,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 00:04:40] 2026-01-28 23:04:34,587 | INFO     | [monitor] cgroup control has ended
[2026-01-29 00:04:40] 2026-01-28 23:04:35,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139915904210752)>', '<ExcThread(monitor, started 139915262158592)>']
[2026-01-29 00:04:40] 2026-01-28 23:04:35,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 00:04:40] 2026-01-28 23:04:35,994 | INFO     | [monitor] control thread has ended
[2026-01-29 00:04:40] 2026-01-28 23:04:40,215 | INFO     | all workflow threads have been joined
[2026-01-29 00:04:40] 2026-01-28 23:04:40,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 00:04:40] 2026-01-28 23:04:40,216 | INFO     | traces error code: 0
[2026-01-29 00:04:40] 2026-01-28 23:04:40,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 00:04:40] 2026-01-28 23:04:40,259 [wrapper] ==== pilot stdout END ====
[2026-01-29 00:04:40] 2026-01-28 23:04:40,262 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 00:04:40] 2026-01-28 23:04:40,264 [wrapper] pilotpid: 242325
[2026-01-29 00:04:40] 2026-01-28 23:04:40,266 [wrapper] Pilot exit status: 0
[2026-01-29 00:04:40] 2026-01-28 23:04:40,274 [wrapper] pandaids: 6985621771
[2026-01-29 00:04:40] 2026-01-28 23:04:40,293 [wrapper] cleanup supervisor_pilot  261563 242326
[2026-01-29 00:04:40] 2026-01-28 23:04:40,295 [wrapper] Test setup, not cleaning
[2026-01-29 00:04:40] 2026-01-28 23:04:40,298 [wrapper] apfmon messages muted
[2026-01-29 00:04:40] 2026-01-28 23:04:40,300 [wrapper] ==== wrapper stdout END ====
[2026-01-29 00:04:40] 2026-01-28 23:04:40,302 [wrapper] ==== wrapper stderr END ====
[2026-01-29 00:04:40]  *** Error codes and diagnostics ***
[2026-01-29 00:04:40]     "exeErrorCode": 0,
[2026-01-29 00:04:40]     "exeErrorDiag": "",
[2026-01-29 00:04:40]     "pilotErrorCode": 0,
[2026-01-29 00:04:40]     "pilotErrorDiag": "",
[2026-01-29 00:04:40]  *** Listing of results directory ***
[2026-01-29 00:04:40] total 670576
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc    584422 Jan 28 14:49 pilot3.tar.gz
[2026-01-29 00:04:40] -rwx------ 1 boinc boinc     36322 Jan 28 14:49 runpilot2-wrapper.sh
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc      5111 Jan 28 14:50 queuedata.json
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc       100 Jan 28 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 00:04:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 22:24 run_atlas
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc       105 Jan 28 22:24 job.xml
[2026-01-29 00:04:40] -rw-r--r-- 2 boinc boinc 497946756 Jan 28 22:24 EVNT.48317929._000094.pool.root.1
[2026-01-29 00:04:40] drwxrwx--x 2 boinc boinc      4096 Jan 28 22:24 shared
[2026-01-29 00:04:40] -rw-r--r-- 2 boinc boinc    597761 Jan 28 22:24 input.tar.gz
[2026-01-29 00:04:40] -rw-r--r-- 2 boinc boinc     15845 Jan 28 22:24 start_atlas.sh
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc         0 Jan 28 22:24 boinc_setup_complete
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc      6199 Jan 28 22:24 init_data.xml
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc         0 Jan 28 22:24 boinc_lockfile
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc      2509 Jan 28 22:24 pandaJob.out
[2026-01-29 00:04:40] -rw------- 1 boinc boinc   1005755 Jan 28 22:24 agis_schedconf.cvmfs.json
[2026-01-29 00:04:40] -rw------- 1 boinc boinc   1516246 Jan 28 22:24 agis_ddmendpoints.agis.ALL.json
[2026-01-29 00:04:40] -rw------- 1 boinc boinc       430 Jan 28 22:24 workernode_map.json
[2026-01-29 00:04:40] drwx------ 5 boinc boinc      4096 Jan 28 22:24 pilot3
[2026-01-29 00:04:40] -rw------- 1 boinc boinc 182455274 Jan 29 00:03 HITS.48317931._003511.pool.root.1
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc       530 Jan 29 00:03 boinc_task_state.xml
[2026-01-29 00:04:40] -rw------- 1 boinc boinc      1030 Jan 29 00:03 memory_monitor_summary.json
[2026-01-29 00:04:40] -rw------- 1 boinc boinc    304774 Jan 29 00:03 log.48317931._003511.job.log.tgz.1
[2026-01-29 00:04:40] -rw------- 1 boinc boinc      6320 Jan 29 00:03 heartbeat.json
[2026-01-29 00:04:40] -rw------- 1 boinc boinc        95 Jan 29 00:04 pilot_heartbeat.json
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc        27 Jan 29 00:04 wrapper_checkpoint.txt
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc      8192 Jan 29 00:04 boinc_mmap_file
[2026-01-29 00:04:40] -rw------- 1 boinc boinc      4819 Jan 29 00:04 pilotlog.txt
[2026-01-29 00:04:40] -rw------- 1 boinc boinc    860256 Jan 29 00:04 log.48317931._003511.job.log.1
[2026-01-29 00:04:40] -rw------- 1 boinc boinc       357 Jan 29 00:04 output.list
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc       620 Jan 29 00:04 runtime_log
[2026-01-29 00:04:40] -rw------- 1 boinc boinc   1187840 Jan 29 00:04 result.tar.gz
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc      8916 Jan 29 00:04 runtime_log.err
[2026-01-29 00:04:40] -rw------- 1 boinc boinc       661 Jan 29 00:04 izJMDmK6K58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmY9FKDmiTs8Cn.diag
[2026-01-29 00:04:40] -rw-r--r-- 1 boinc boinc     10363 Jan 29 00:04 stderr.txt
[2026-01-29 00:04:40] HITS file was successfully produced:
[2026-01-29 00:04:40] -rw------- 1 boinc boinc 182455274 Jan 29 00:03 shared/HITS.pool.root.1
[2026-01-29 00:04:40]  *** Contents of shared directory: ***
[2026-01-29 00:04:40] total 666228
[2026-01-29 00:04:40] -rw-r--r-- 2 boinc boinc 497946756 Jan 28 22:24 ATLAS.root_0
[2026-01-29 00:04:40] -rw-r--r-- 2 boinc boinc    597761 Jan 28 22:24 input.tar.gz
[2026-01-29 00:04:40] -rw-r--r-- 2 boinc boinc     15845 Jan 28 22:24 start_atlas.sh
[2026-01-29 00:04:40] -rw------- 1 boinc boinc 182455274 Jan 29 00:03 HITS.pool.root.1
[2026-01-29 00:04:40] -rw------- 1 boinc boinc   1187840 Jan 29 00:04 result.tar.gz
00:04:41 (238269): run_atlas exited; CPU time 17165.303635
00:04:41 (238269): called boinc_finish(0)

</stderr_txt>
]]>

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