Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
10:26:52 (3257570): wrapper (7.7.26015): starting
10:26:52 (3257570): wrapper: running run_atlas (--nthreads 4)
[2026-01-29 10:26:52] Arguments: --nthreads 4
[2026-01-29 10:26:52] Threads: 4
[2026-01-29 10:26:52] Checking for CVMFS
[2026-01-29 10:26:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 10:26:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 10:26:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 10:26:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 10:26:53] 2.13.3.0 4067727 578 42524 155626 2 188 21953260 33554433 0 130560 0 355975 99.999 87 2 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-29 10:26:53] CVMFS is ok
[2026-01-29 10:26:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 10:26:53] Checking for apptainer binary...
[2026-01-29 10:26:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 10:26:53] Running /usr/bin/apptainer --version
[2026-01-29 10:26:53] apptainer version 1.4.5
[2026-01-29 10:26:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 10:26:54] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-29 10:26:54] apptainer works
[2026-01-29 10:26:54] Set ATHENA_PROC_NUMBER=4
[2026-01-29 10:26:54] Set ATHENA_CORE_NUMBER=4
[2026-01-29 10:26:54] Starting ATLAS job with PandaID=6986150628
[2026-01-29 10:26:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 11:27:12]  *** The last 200 lines of the pilot log: ***
[2026-01-29 11:27:12]  is_tar=False
[2026-01-29 11:27:12]  lfn=log.48317931._005061.job.log.tgz.1
[2026-01-29 11:27:12]  mtime=0
[2026-01-29 11:27:12]  protocol_id=None
[2026-01-29 11:27:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-29 11:27:12]  replicas=None
[2026-01-29 11:27:12]  scope=mc23_13p6TeV
[2026-01-29 11:27:12]  status=None
[2026-01-29 11:27:12]  status_code=0
[2026-01-29 11:27:12]  storage_token=
[2026-01-29 11:27:12]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-6986150628/log.48317931._005061.job.log.tgz.1
[2026-01-29 11:27:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/1b/log.48317931._005061.job.log.tgz.1
[2026-01-29 11:27:12]  workdir=None
[2026-01-29 11:27:12] ]
[2026-01-29 11:27:12] 2026-01-29 09:26:46,597 | INFO     | transferring file log.48317931._005061.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-6986150628/log.48317931._005061.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-29 11:27:12] 2026-01-29 09:26:46,597 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-6986150628/log.48317931._005061.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48317931._005061.job
[2026-01-29 11:27:12] 2026-01-29 09:26:46,605 | INFO     | adding to output.list: log.48317931._005061.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/1b/log.48317931._005061.job.log.tg
[2026-01-29 11:27:12] 2026-01-29 09:26:46,605 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-29 11:27:12] 2026-01-29 09:26:46,605 | INFO     | summary of transferred files:
[2026-01-29 11:27:12] 2026-01-29 09:26:46,605 | INFO     |  -- lfn=log.48317931._005061.job.log.tgz.1, status_code=0, status=transferred
[2026-01-29 11:27:12] 2026-01-29 09:26:46,605 | INFO     | stage-out finished correctly
[2026-01-29 11:27:12] 2026-01-29 09:26:47,285 | INFO     | time since job start (3585s) is within the limit (349056.0s)
[2026-01-29 11:27:12] 2026-01-29 09:26:47,291 | WARNING  | process 3292750 can no longer be monitored (due to stat problems) - aborting
[2026-01-29 11:27:12] 2026-01-29 09:26:47,291 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-6986150628/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 11:27:12] 2026-01-29 09:26:47,371 | INFO     | number of running child processes to parent process 3292750: 1
[2026-01-29 11:27:12] 2026-01-29 09:26:47,371 | INFO     | maximum number of monitored processes: 6
[2026-01-29 11:27:12] 2026-01-29 09:26:47,981 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-29 11:27:12] 2026-01-29 09:26:48,635 | INFO     | job 6986150628 has state=finished
[2026-01-29 11:27:12] 2026-01-29 09:26:48,636 | INFO     | preparing for final server update for job 6986150628 in state='finished'
[2026-01-29 11:27:12] 2026-01-29 09:26:49,290 | INFO     | time since job start (3587s) is within the limit (349056.0s)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,505 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,505 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-6986150628/jobReport.json
[2026-01-29 11:27:12] 2026-01-29 09:26:49,506 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-01-29 11:27:12] 2026-01-29 09:26:49,506 | INFO     | this job has now completed (state=finished)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,506 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,506 | INFO     | log transfer has been attempted: DONE
[2026-01-29 11:27:12] 2026-01-29 09:26:49,506 | INFO     | job 6986150628 has finished - writing final server update
[2026-01-29 11:27:12] 2026-01-29 09:26:49,506 | INFO     | total number of processed events: 400 (read)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,508 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-6986150628/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | extracted standard info from prmon json
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | extracted standard memory fields from prmon json
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | fitting pss+swap vs Time
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | sum of square deviations: 43584073.0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | sum of deviations: -3745571105.0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | mean x: 1769677098.5
[2026-01-29 11:27:12] 2026-01-29 09:26:49,509 | INFO     | mean y: 2731278.9615384615
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | intersect: 152086989336.2991
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | chi2: 0.1048983363425991
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | current memory leak: -85.94 B/s (using 52 data points, chi2=0.10)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | could have reported an average CPU frequency of 3792 MHz (5 samples)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | ..............................
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . Timing measurements:
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . get job = 0 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . initial setup = 3 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . payload setup = 2 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . stage-in = 0 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . payload execution = 3566 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . stage-out = 0 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | . log creation = 0 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,510 | INFO     | ..............................
[2026-01-29 11:27:12] 2026-01-29 09:26:49,536 | INFO     | 
[2026-01-29 11:27:12] 2026-01-29 09:26:49,536 | INFO     | job summary report
[2026-01-29 11:27:12] 2026-01-29 09:26:49,536 | INFO     | --------------------------------------------------
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | PanDA job id: 6986150628
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | task id: 48317931
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | errors: (none)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | pilot state: finished 
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | transexitcode: 0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | exeerrorcode: 0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | exeerrordiag: 
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | exitcode: 0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | exitmsg: OK
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | cpuconsumptiontime: 13470 s
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | nevents: 400
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | neventsw: 0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | pid: 3292750
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | pgrp: 3292750
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | corecount: 4
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | event service: False
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | sizes: {0: 2284176, 11: 2284176, 3572: 2309954, 3573: 2318952, 3575: 2319008, 3576: 2319234}
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | --------------------------------------------------
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | 
[2026-01-29 11:27:12] 2026-01-29 09:26:49,537 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-01-29 11:27:12] 2026-01-29 09:26:49,546 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,546 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,546 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,546 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,546 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | job 6986150628 has completed (purged errors)
[2026-01-29 11:27:12] 2026-01-29 09:26:49,547 | INFO     | overall cleanup function is called
[2026-01-29 11:27:12] 2026-01-29 09:26:50,386 | INFO     | PID=3267954 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 11:27:12] 2026-01-29 09:26:50,554 | INFO     | --- collectZombieJob: --- 10, [3292750]
[2026-01-29 11:27:12] 2026-01-29 09:26:50,554 | INFO     | zombie collector waiting for pid 3292750
[2026-01-29 11:27:12] 2026-01-29 09:26:50,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 11:27:12] 2026-01-29 09:26:50,554 | INFO     | collected zombie processes
[2026-01-29 11:27:12] 2026-01-29 09:26:50,554 | INFO     | will attempt to kill all subprocesses of pid=3292750
[2026-01-29 11:27:12] 2026-01-29 09:26:50,639 | INFO     | process IDs to be killed: [3292750] (in reverse order)
[2026-01-29 11:27:12] 2026-01-29 09:26:50,671 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 11:27:12] 2026-01-29 09:26:50,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 11:27:12] 2026-01-29 09:26:50,674 | INFO     | did not find any defunct processes belonging to 3292750
[2026-01-29 11:27:12] 2026-01-29 09:26:50,677 | INFO     | did not find any defunct processes belonging to 3292750
[2026-01-29 11:27:12] 2026-01-29 09:26:50,677 | INFO     | ready for new job
[2026-01-29 11:27:12] 2026-01-29 09:26:50,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 11:27:12] 2026-01-29 09:26:50,678 | INFO     | **************************************
[2026-01-29 11:27:12] 2026-01-29 09:26:50,678 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 11:27:12] 2026-01-29 09:26:50,678 | INFO     | **************************************
[2026-01-29 11:27:12] 2026-01-29 09:26:50,678 | INFO     | 
[2026-01-29 11:27:12] 2026-01-29 09:26:50,678 | INFO     | architecture information:
[2026-01-29 11:27:12] 2026-01-29 09:26:50,678 | INFO     | executing command: cat /etc/os-release
[2026-01-29 11:27:12] 2026-01-29 09:26:50,684 | INFO     | cat /etc/os-release:
[2026-01-29 11:27:12] NAME="CentOS Linux"
[2026-01-29 11:27:12] VERSION="7 (Core)"
[2026-01-29 11:27:12] ID="centos"
[2026-01-29 11:27:12] ID_LIKE="rhel fedora"
[2026-01-29 11:27:12] VERSION_ID="7"
[2026-01-29 11:27:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 11:27:12] ANSI_COLOR="0;31"
[2026-01-29 11:27:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 11:27:12] HOME_URL="https://www.centos.org/"
[2026-01-29 11:27:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 11:27:12] 
[2026-01-29 11:27:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 11:27:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 11:27:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 11:27:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 11:27:12] 
[2026-01-29 11:27:12] 2026-01-29 09:26:50,684 | INFO     | **************************************
[2026-01-29 11:27:12] 2026-01-29 09:26:51,187 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | INFO     | sufficient remaining disk space (58361643008 B)
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | INFO     | update_server=False
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 11:27:12] 2026-01-29 09:26:51,194 | INFO     | aborting loop
[2026-01-29 11:27:12] 2026-01-29 09:26:51,590 | INFO     | all data control threads have been joined
[2026-01-29 11:27:12] 2026-01-29 09:26:51,966 | INFO     | job.realtimelogging is not enabled
[2026-01-29 11:27:12] 2026-01-29 09:26:52,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 11:27:12] 2026-01-29 09:26:52,199 | INFO     | [job] retrieve thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,199 | INFO     | [job] queue monitor thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,200 | INFO     | [job] job monitor thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,267 | INFO     | [data] copytool_in thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,448 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,505 | INFO     | all payload control threads have been joined
[2026-01-29 11:27:12] 2026-01-29 09:26:52,595 | INFO     | [data] control thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,627 | INFO     | all job control threads have been joined
[2026-01-29 11:27:12] 2026-01-29 09:26:52,880 | INFO     | [payload] validate_post thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:52,971 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:53,141 | INFO     | [payload] failed_post thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:53,510 | INFO     | [payload] control thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:53,526 | INFO     | [job] validate thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:53,632 | INFO     | [job] control thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:53,678 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:53,682 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:54,018 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 11:27:12] 2026-01-29 09:26:54,145 | INFO     | [data] copytool_out thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:58,023 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 11:27:12] 2026-01-29 09:26:58,329 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-29 11:27:12] 2026-01-29 09:27:07,087 | INFO     | [monitor] cgroup control has ended
[2026-01-29 11:27:12] 2026-01-29 09:27:07,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031950997312)>', '<ExcThread(monitor, started 140031008163584)>']
[2026-01-29 11:27:12] 2026-01-29 09:27:08,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 11:27:12] 2026-01-29 09:27:08,272 | INFO     | [monitor] control thread has ended
[2026-01-29 11:27:12] 2026-01-29 09:27:12,689 | INFO     | all workflow threads have been joined
[2026-01-29 11:27:12] 2026-01-29 09:27:12,690 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 11:27:12] 2026-01-29 09:27:12,690 | INFO     | traces error code: 0
[2026-01-29 11:27:12] 2026-01-29 09:27:12,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 11:27:12] 2026-01-29 09:27:12,735 [wrapper] ==== pilot stdout END ====
[2026-01-29 11:27:12] 2026-01-29 09:27:12,736 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 11:27:12] 2026-01-29 09:27:12,737 [wrapper] pilotpid: 3267954
[2026-01-29 11:27:12] 2026-01-29 09:27:12,740 [wrapper] Pilot exit status: 0
[2026-01-29 11:27:12] 2026-01-29 09:27:12,745 [wrapper] pandaids: 6986150628
[2026-01-29 11:27:12] 2026-01-29 09:27:12,765 [wrapper] cleanup supervisor_pilot 3616687 3267955
[2026-01-29 11:27:12] 2026-01-29 09:27:12,766 [wrapper] Test setup, not cleaning
[2026-01-29 11:27:12] 2026-01-29 09:27:12,767 [wrapper] apfmon messages muted
[2026-01-29 11:27:12] 2026-01-29 09:27:12,769 [wrapper] ==== wrapper stdout END ====
[2026-01-29 11:27:12] 2026-01-29 09:27:12,770 [wrapper] ==== wrapper stderr END ====
[2026-01-29 11:27:12]  *** Error codes and diagnostics ***
[2026-01-29 11:27:12]     "exeErrorCode": 0,
[2026-01-29 11:27:12]     "exeErrorDiag": "",
[2026-01-29 11:27:12]     "pilotErrorCode": 0,
[2026-01-29 11:27:12]     "pilotErrorDiag": "",
[2026-01-29 11:27:12]  *** Listing of results directory ***
[2026-01-29 11:27:12] total 669180
[2026-01-29 11:27:12] -rw-r--r-- 1 ek ek    584422 Jan 28 19:04 pilot3.tar.gz
[2026-01-29 11:27:12] -rwx------ 1 ek ek     36322 Jan 28 19:04 runpilot2-wrapper.sh
[2026-01-29 11:27:12] -rw-r--r-- 1 ek ek      5111 Jan 28 19:06 queuedata.json
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek       100 Jan 29 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 11:27:12] -rwxr-xr-x 1 ek ek      7986 Jan 29 10:26 run_atlas
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek       105 Jan 29 10:26 job.xml
[2026-01-29 11:27:12] -rw-r--r-- 2 ek ek 496367896 Jan 29 10:26 EVNT.48317929._000045.pool.root.1
[2026-01-29 11:27:12] -rw-r--r-- 2 ek ek    597749 Jan 29 10:26 input.tar.gz
[2026-01-29 11:27:12] -rw-r--r-- 2 ek ek     15845 Jan 29 10:26 start_atlas.sh
[2026-01-29 11:27:12] drwxrwx--x 2 ek ek      4096 Jan 29 10:26 shared
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek         0 Jan 29 10:26 boinc_setup_complete
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek      9841 Jan 29 10:26 init_data.xml
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek         0 Jan 29 10:26 boinc_lockfile
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek      2508 Jan 29 10:26 pandaJob.out
[2026-01-29 11:27:12] -rw------- 1 ek ek        50 Jan 29 10:26 setup.sh.local
[2026-01-29 11:27:12] -rw------- 1 ek ek   1005755 Jan 29 10:26 agis_schedconf.cvmfs.json
[2026-01-29 11:27:12] -rw------- 1 ek ek   1516246 Jan 29 10:26 agis_ddmendpoints.agis.ALL.json
[2026-01-29 11:27:12] -rw------- 1 ek ek       433 Jan 29 10:27 workernode_map.json
[2026-01-29 11:27:12] drwx------ 5 ek ek      4096 Jan 29 10:27 pilot3
[2026-01-29 11:27:12] -rw------- 1 ek ek        95 Jan 29 11:26 pilot_heartbeat.json
[2026-01-29 11:27:12] -rw------- 1 ek ek 183298172 Jan 29 11:26 HITS.48317931._005061.pool.root.1
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek       530 Jan 29 11:26 boinc_task_state.xml
[2026-01-29 11:27:12] -rw------- 1 ek ek      1023 Jan 29 11:26 memory_monitor_summary.json
[2026-01-29 11:27:12] -rw------- 1 ek ek    272549 Jan 29 11:26 log.48317931._005061.job.log.tgz.1
[2026-01-29 11:27:12] -rw------- 1 ek ek      6314 Jan 29 11:26 heartbeat.json
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek      8192 Jan 29 11:27 boinc_mmap_file
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek        27 Jan 29 11:27 wrapper_checkpoint.txt
[2026-01-29 11:27:12] -rw------- 1 ek ek      4620 Jan 29 11:27 pilotlog.txt
[2026-01-29 11:27:12] -rw------- 1 ek ek    538257 Jan 29 11:27 log.48317931._005061.job.log.1
[2026-01-29 11:27:12] -rw------- 1 ek ek       357 Jan 29 11:27 output.list
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek       620 Jan 29 11:27 runtime_log
[2026-01-29 11:27:12] -rw------- 1 ek ek    829440 Jan 29 11:27 result.tar.gz
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek      9501 Jan 29 11:27 runtime_log.err
[2026-01-29 11:27:12] -rw------- 1 ek ek       660 Jan 29 11:27 0W6KDmO9N58n9Rq4apOajLDm4fhM0noT9bVooX4SDmhaGKDmOOnfpm.diag
[2026-01-29 11:27:12] -rw-rw-r-- 1 ek ek     21400 Jan 29 11:27 stderr.txt
[2026-01-29 11:27:12] HITS file was successfully produced:
[2026-01-29 11:27:12] -rw------- 1 ek ek 183298172 Jan 29 11:26 shared/HITS.pool.root.1
[2026-01-29 11:27:12]  *** Contents of shared directory: ***
[2026-01-29 11:27:12] total 665160
[2026-01-29 11:27:12] -rw-r--r-- 2 ek ek 496367896 Jan 29 10:26 ATLAS.root_0
[2026-01-29 11:27:12] -rw-r--r-- 2 ek ek    597749 Jan 29 10:26 input.tar.gz
[2026-01-29 11:27:12] -rw-r--r-- 2 ek ek     15845 Jan 29 10:26 start_atlas.sh
[2026-01-29 11:27:12] -rw------- 1 ek ek 183298172 Jan 29 11:26 HITS.pool.root.1
[2026-01-29 11:27:12] -rw------- 1 ek ek    829440 Jan 29 11:27 result.tar.gz
11:27:13 (3257570): run_atlas exited; CPU time 13500.172619
11:27:13 (3257570): called boinc_finish(0)

</stderr_txt>
]]>

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