Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:17:05 (2487420): wrapper (7.7.26015): starting
19:17:05 (2487420): wrapper: running run_atlas (--nthreads 2)
[2026-01-28 19:17:05] Arguments: --nthreads 2
[2026-01-28 19:17:05] Threads: 2
[2026-01-28 19:17:05] Checking for CVMFS
[2026-01-28 19:17:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 19:17:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 19:17:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 19:17:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 19:17:07] 2.9.2.0 2457232 281 48476 155622 2 188 23917423 36864000 0 130560 0 81687 99.979 2946 7081 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 19:17:07] CVMFS is ok
[2026-01-28 19:17:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 19:17:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 19:17:07] Further information can be found at the LHC@home message board.
[2026-01-28 19:17:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 19:17:07] Checking for apptainer binary...
[2026-01-28 19:17:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 19:17:07] Running /usr/bin/apptainer --version
[2026-01-28 19:17:07] apptainer version 1.4.1-1.1
[2026-01-28 19:17:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 19:17:07] thA310
[2026-01-28 19:17:07] apptainer works
[2026-01-28 19:17:07] Set ATHENA_PROC_NUMBER=2
[2026-01-28 19:17:07] Set ATHENA_CORE_NUMBER=2
[2026-01-28 19:17:07] Starting ATLAS job with PandaID=6985341830
[2026-01-28 19:17:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 21:41:03]  *** The last 200 lines of the pilot log: ***
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | job 6985341830 has completed (purged errors)
[2026-01-28 21:41:03] 2026-01-28 20:40:31,307 | INFO     | overall cleanup function is called
[2026-01-28 21:41:03] 2026-01-28 20:40:32,313 | INFO     | --- collectZombieJob: --- 10, [2495864]
[2026-01-28 21:41:03] 2026-01-28 20:40:32,313 | INFO     | zombie collector waiting for pid 2495864
[2026-01-28 21:41:03] 2026-01-28 20:40:32,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 21:41:03] 2026-01-28 20:40:32,314 | INFO     | collected zombie processes
[2026-01-28 21:41:03] 2026-01-28 20:40:32,314 | INFO     | will attempt to kill all subprocesses of pid=2495864
[2026-01-28 21:41:03] 2026-01-28 20:40:32,360 | INFO     | process IDs to be killed: [2495864] (in reverse order)
[2026-01-28 21:41:03] 2026-01-28 20:40:32,383 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 21:41:03] 2026-01-28 20:40:32,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 21:41:03] 2026-01-28 20:40:32,384 | INFO     | did not find any defunct processes belonging to 2495864
[2026-01-28 21:41:03] 2026-01-28 20:40:32,385 | INFO     | did not find any defunct processes belonging to 2495864
[2026-01-28 21:41:03] 2026-01-28 20:40:32,385 | INFO     | ready for new job
[2026-01-28 21:41:03] 2026-01-28 20:40:32,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 21:41:03] 2026-01-28 20:40:32,386 | INFO     | **************************************
[2026-01-28 21:41:03] 2026-01-28 20:40:32,386 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 21:41:03] 2026-01-28 20:40:32,386 | INFO     | **************************************
[2026-01-28 21:41:03] 2026-01-28 20:40:32,386 | INFO     | 
[2026-01-28 21:41:03] 2026-01-28 20:40:32,386 | INFO     | architecture information:
[2026-01-28 21:41:03] 2026-01-28 20:40:32,386 | INFO     | executing command: cat /etc/os-release
[2026-01-28 21:41:03] 2026-01-28 20:40:32,395 | INFO     | cat /etc/os-release:
[2026-01-28 21:41:03] NAME="CentOS Linux"
[2026-01-28 21:41:03] VERSION="7 (Core)"
[2026-01-28 21:41:03] ID="centos"
[2026-01-28 21:41:03] ID_LIKE="rhel fedora"
[2026-01-28 21:41:03] VERSION_ID="7"
[2026-01-28 21:41:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 21:41:03] ANSI_COLOR="0;31"
[2026-01-28 21:41:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 21:41:03] HOME_URL="https://www.centos.org/"
[2026-01-28 21:41:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 21:41:03] 
[2026-01-28 21:41:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 21:41:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 21:41:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 21:41:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 21:41:03] 
[2026-01-28 21:41:03] 2026-01-28 20:40:32,395 | INFO     | **************************************
[2026-01-28 21:41:03] 2026-01-28 20:40:32,898 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 21:41:03] 2026-01-28 20:40:32,909 | INFO     | sufficient remaining disk space (499121127424 B)
[2026-01-28 21:41:03] 2026-01-28 20:40:32,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 21:41:03] 2026-01-28 20:40:32,909 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 21:41:03] 2026-01-28 20:40:32,909 | INFO     | update_server=False
[2026-01-28 21:41:03] 2026-01-28 20:40:32,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 21:41:03] 2026-01-28 20:40:32,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 21:41:03] 2026-01-28 20:40:32,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 21:41:03] 2026-01-28 20:40:33,061 | INFO     | job.realtimelogging is not enabled
[2026-01-28 21:41:03] 2026-01-28 20:40:33,084 | INFO     | all job control threads have been joined
[2026-01-28 21:41:03] 2026-01-28 20:40:33,165 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 21:41:03] 2026-01-28 20:40:33,166 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 21:41:03] 2026-01-28 20:40:33,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 21:41:03] 2026-01-28 20:40:33,166 | INFO     | will abort loop
[2026-01-28 21:41:03] 2026-01-28 20:40:33,278 | INFO     | all payload control threads have been joined
[2026-01-28 21:41:03] 2026-01-28 20:40:33,427 | INFO     | all data control threads have been joined
[2026-01-28 21:41:03] 2026-01-28 20:40:33,914 | INFO     | [job] retrieve thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:33,915 | INFO     | [job] queue monitor thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:33,956 | INFO     | [payload] failed_post thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,067 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,083 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,090 | INFO     | [job] control thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,172 | INFO     | [job] job monitor thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,284 | INFO     | [payload] control thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,433 | INFO     | [data] control thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,600 | INFO     | [payload] validate_post thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:34,915 | INFO     | [data] copytool_out thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:35,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 21:41:03] 2026-01-28 20:40:35,168 | INFO     | [job] validate thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:35,285 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:35,309 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:35,378 | INFO     | [data] copytool_in thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:39,159 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 21:41:03] 2026-01-28 20:40:40,408 | INFO     | [monitor] cgroup control has ended
[2026-01-28 21:41:03] 2026-01-28 20:40:41,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140496093607744)>', '<ExcThread(monitor, started 140495149852416)>']
[2026-01-28 21:41:03] 2026-01-28 20:40:46,577 | INFO     | all workflow threads have been joined
[2026-01-28 21:41:03] 2026-01-28 20:40:46,577 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 21:41:03] 2026-01-28 20:40:46,578 | INFO     | traces error code: 0
[2026-01-28 21:41:03] 2026-01-28 20:40:46,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 21:41:03] 2026-01-28 20:41:03,268 | INFO     | PID=2491451 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 21:41:03] 2026-01-28 20:41:03,268 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 21:41:03] 2026-01-28 20:41:03,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 21:41:03] 2026-01-28 20:41:03,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 21:41:03] 2026-01-28 20:41:03,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 21:41:03] 2026-01-28 20:41:03,268 | INFO     | [monitor] control thread has ended
[2026-01-28 21:41:03] 2026-01-28 20:41:03,308 [wrapper] ==== pilot stdout END ====
[2026-01-28 21:41:03] 2026-01-28 20:41:03,310 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 21:41:03] 2026-01-28 20:41:03,312 [wrapper] pilotpid: 2491451
[2026-01-28 21:41:03] 2026-01-28 20:41:03,315 [wrapper] Pilot exit status: 0
[2026-01-28 21:41:03] 2026-01-28 20:41:03,320 [wrapper] pandaids: 6985341830
[2026-01-28 21:41:03] 2026-01-28 20:41:03,333 [wrapper] cleanup supervisor_pilot 2501877 2491452
[2026-01-28 21:41:03] 2026-01-28 20:41:03,335 [wrapper] Test setup, not cleaning
[2026-01-28 21:41:03] 2026-01-28 20:41:03,337 [wrapper] apfmon messages muted
[2026-01-28 21:41:03] 2026-01-28 20:41:03,339 [wrapper] ==== wrapper stdout END ====
[2026-01-28 21:41:03] 2026-01-28 20:41:03,341 [wrapper] ==== wrapper stderr END ====
[2026-01-28 21:41:03]  *** Error codes and diagnostics ***
[2026-01-28 21:41:03]     "exeErrorCode": 0,
[2026-01-28 21:41:03]     "exeErrorDiag": "",
[2026-01-28 21:41:03]     "pilotErrorCode": 0,
[2026-01-28 21:41:03]     "pilotErrorDiag": "",
[2026-01-28 21:41:03]  *** Listing of results directory ***
[2026-01-28 21:41:03] total 719752
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc    621528 Jan 14 12:27 pilot3.tar.gz
[2026-01-28 21:41:03] -rwx------ 1 boinc boinc     36322 Jan 28 13:31 runpilot2-wrapper.sh
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:37 queuedata.json
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc       100 Jan 28 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 21:41:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 19:17 run_atlas
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc       105 Jan 28 19:17 job.xml
[2026-01-28 21:41:03] -rw-r--r-- 2 boinc boinc 529565890 Jan 28 19:17 EVNT.48317909._000103.pool.root.1
[2026-01-28 21:41:03] -rw-r--r-- 2 boinc boinc    634116 Jan 28 19:17 input.tar.gz
[2026-01-28 21:41:03] -rw-r--r-- 2 boinc boinc     15845 Jan 28 19:17 start_atlas.sh
[2026-01-28 21:41:03] drwxrwx--x 2 boinc boinc      4096 Jan 28 19:17 shared
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc         0 Jan 28 19:17 boinc_setup_complete
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc      6206 Jan 28 19:17 init_data.xml
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc         0 Jan 28 19:17 boinc_lockfile
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc      2501 Jan 28 19:17 pandaJob.out
[2026-01-28 21:41:03] -rw------- 1 boinc boinc   1005192 Jan 28 19:17 agis_schedconf.cvmfs.json
[2026-01-28 21:41:03] -rw------- 1 boinc boinc   1516246 Jan 28 19:17 agis_ddmendpoints.agis.ALL.json
[2026-01-28 21:41:03] -rw------- 1 boinc boinc       419 Jan 28 19:17 workernode_map.json
[2026-01-28 21:41:03] drwx------ 5 boinc boinc      4096 Jan 28 19:17 pilot3
[2026-01-28 21:41:03] -rw------- 1 boinc boinc        95 Jan 28 21:40 pilot_heartbeat.json
[2026-01-28 21:41:03] -rw------- 1 boinc boinc 200379550 Jan 28 21:40 HITS.48317911._005139.pool.root.1
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc       530 Jan 28 21:40 boinc_task_state.xml
[2026-01-28 21:41:03] -rw------- 1 boinc boinc      1029 Jan 28 21:40 memory_monitor_summary.json
[2026-01-28 21:41:03] -rw------- 1 boinc boinc    292226 Jan 28 21:40 log.48317911._005139.job.log.tgz.1
[2026-01-28 21:41:03] -rw------- 1 boinc boinc      6301 Jan 28 21:40 heartbeat.json
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc      8192 Jan 28 21:40 boinc_mmap_file
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc        27 Jan 28 21:40 wrapper_checkpoint.txt
[2026-01-28 21:41:03] -rw------- 1 boinc boinc       747 Jan 28 21:41 pilotlog.txt
[2026-01-28 21:41:03] -rw------- 1 boinc boinc   1251728 Jan 28 21:41 log.48317911._005139.job.log.1
[2026-01-28 21:41:03] -rw------- 1 boinc boinc       357 Jan 28 21:41 output.list
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc       620 Jan 28 21:41 runtime_log
[2026-01-28 21:41:03] -rw------- 1 boinc boinc   1556480 Jan 28 21:41 result.tar.gz
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc      8896 Jan 28 21:41 runtime_log.err
[2026-01-28 21:41:03] -rw------- 1 boinc boinc       657 Jan 28 21:41 M6ZNDm8sJ58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmp5FKDmVVVI4m.diag
[2026-01-28 21:41:03] -rw-r--r-- 1 boinc boinc     12864 Jan 28 21:41 stderr.txt
[2026-01-28 21:41:03] HITS file was successfully produced:
[2026-01-28 21:41:03] -rw------- 1 boinc boinc 200379550 Jan 28 21:40 shared/HITS.pool.root.1
[2026-01-28 21:41:03]  *** Contents of shared directory: ***
[2026-01-28 21:41:03] total 715004
[2026-01-28 21:41:03] -rw-r--r-- 2 boinc boinc 529565890 Jan 28 19:17 ATLAS.root_0
[2026-01-28 21:41:03] -rw-r--r-- 2 boinc boinc    634116 Jan 28 19:17 input.tar.gz
[2026-01-28 21:41:03] -rw-r--r-- 2 boinc boinc     15845 Jan 28 19:17 start_atlas.sh
[2026-01-28 21:41:03] -rw------- 1 boinc boinc 200379550 Jan 28 21:40 HITS.pool.root.1
[2026-01-28 21:41:03] -rw------- 1 boinc boinc   1556480 Jan 28 21:41 result.tar.gz
21:41:04 (2487420): run_atlas exited; CPU time 16767.481725
21:41:04 (2487420): called boinc_finish(0)

</stderr_txt>
]]>

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