Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:48:59 (3162501): wrapper (7.7.26015): starting
18:48:59 (3162501): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 18:48:59] Arguments: --nthreads 3
[2026-01-28 18:48:59] Threads: 3
[2026-01-28 18:48:59] Checking for CVMFS
[2026-01-28 18:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 18:49:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 18:49:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 18:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 18:49:00] 2.9.2.0 3133510 171 52304 155622 0 188 24138308 36864001 0 130560 0 79953 99.979 2930 12794 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 18:49:00] CVMFS is ok
[2026-01-28 18:49:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 18:49:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 18:49:00] Further information can be found at the LHC@home message board.
[2026-01-28 18:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 18:49:00] Checking for apptainer binary...
[2026-01-28 18:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 18:49:00] Running /usr/bin/apptainer --version
[2026-01-28 18:49:00] apptainer version 1.4.1-1.1
[2026-01-28 18:49:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 18:49:00] thA335b
[2026-01-28 18:49:00] apptainer works
[2026-01-28 18:49:00] Set ATHENA_PROC_NUMBER=3
[2026-01-28 18:49:00] Set ATHENA_CORE_NUMBER=3
[2026-01-28 18:49:00] Starting ATLAS job with PandaID=6985349609
[2026-01-28 18:49:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 20:10:22]  *** The last 200 lines of the pilot log: ***
[2026-01-28 20:10:22] 2026-01-28 19:10:03,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 20:10:22] 2026-01-28 19:10:03,083 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 20:10:22] 2026-01-28 19:10:03,083 | INFO     | job 6985349609 has completed (purged errors)
[2026-01-28 20:10:22] 2026-01-28 19:10:03,083 | INFO     | overall cleanup function is called
[2026-01-28 20:10:22] 2026-01-28 19:10:04,089 | INFO     | --- collectZombieJob: --- 10, [3170981]
[2026-01-28 20:10:22] 2026-01-28 19:10:04,090 | INFO     | zombie collector waiting for pid 3170981
[2026-01-28 20:10:22] 2026-01-28 19:10:04,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 20:10:22] 2026-01-28 19:10:04,090 | INFO     | collected zombie processes
[2026-01-28 20:10:22] 2026-01-28 19:10:04,090 | INFO     | will attempt to kill all subprocesses of pid=3170981
[2026-01-28 20:10:22] 2026-01-28 19:10:04,131 | INFO     | process IDs to be killed: [3170981] (in reverse order)
[2026-01-28 20:10:22] 2026-01-28 19:10:04,156 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 20:10:22] 2026-01-28 19:10:04,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 20:10:22] 2026-01-28 19:10:04,157 | INFO     | did not find any defunct processes belonging to 3170981
[2026-01-28 20:10:22] 2026-01-28 19:10:04,159 | INFO     | did not find any defunct processes belonging to 3170981
[2026-01-28 20:10:22] 2026-01-28 19:10:04,159 | INFO     | ready for new job
[2026-01-28 20:10:22] 2026-01-28 19:10:04,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 20:10:22] 2026-01-28 19:10:04,160 | INFO     | **************************************
[2026-01-28 20:10:22] 2026-01-28 19:10:04,160 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 20:10:22] 2026-01-28 19:10:04,160 | INFO     | **************************************
[2026-01-28 20:10:22] 2026-01-28 19:10:04,160 | INFO     | 
[2026-01-28 20:10:22] 2026-01-28 19:10:04,160 | INFO     | architecture information:
[2026-01-28 20:10:22] 2026-01-28 19:10:04,160 | INFO     | executing command: cat /etc/os-release
[2026-01-28 20:10:22] 2026-01-28 19:10:04,169 | INFO     | cat /etc/os-release:
[2026-01-28 20:10:22] NAME="CentOS Linux"
[2026-01-28 20:10:22] VERSION="7 (Core)"
[2026-01-28 20:10:22] ID="centos"
[2026-01-28 20:10:22] ID_LIKE="rhel fedora"
[2026-01-28 20:10:22] VERSION_ID="7"
[2026-01-28 20:10:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 20:10:22] ANSI_COLOR="0;31"
[2026-01-28 20:10:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 20:10:22] HOME_URL="https://www.centos.org/"
[2026-01-28 20:10:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 20:10:22] 
[2026-01-28 20:10:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 20:10:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 20:10:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 20:10:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 20:10:22] 
[2026-01-28 20:10:22] 2026-01-28 19:10:04,169 | INFO     | **************************************
[2026-01-28 20:10:22] 2026-01-28 19:10:04,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | INFO     | sufficient remaining disk space (380388769792 B)
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | INFO     | update_server=False
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 20:10:22] 2026-01-28 19:10:04,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 20:10:22] 2026-01-28 19:10:04,687 | INFO     | aborting loop
[2026-01-28 20:10:22] 2026-01-28 19:10:04,687 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-28 20:10:22] 2026-01-28 19:10:04,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 20:10:22] 2026-01-28 19:10:04,687 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 20:10:22] 2026-01-28 19:10:04,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 20:10:22] 2026-01-28 19:10:04,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 20:10:22] 2026-01-28 19:10:04,783 | INFO     | all payload control threads have been joined
[2026-01-28 20:10:22] 2026-01-28 19:10:05,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 20:10:22] 2026-01-28 19:10:05,318 | INFO     | all data control threads have been joined
[2026-01-28 20:10:22] 2026-01-28 19:10:05,597 | INFO     | job.realtimelogging is not enabled
[2026-01-28 20:10:22] 2026-01-28 19:10:05,692 | INFO     | [job] retrieve thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:05,692 | INFO     | [job] queue monitor thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:05,692 | INFO     | [job] job monitor thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:05,789 | INFO     | [payload] control thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:05,941 | INFO     | [payload] validate_post thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,316 | INFO     | all job control threads have been joined
[2026-01-28 20:10:22] 2026-01-28 19:10:06,324 | INFO     | [data] control thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,604 | INFO     | [job] validate thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,664 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,753 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,893 | INFO     | [data] copytool_in thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,948 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:06,956 | INFO     | [payload] failed_post thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:07,143 | INFO     | [data] copytool_out thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:07,322 | INFO     | [job] control thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:08,694 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 20:10:22] 2026-01-28 19:10:16,516 | INFO     | [monitor] cgroup control has ended
[2026-01-28 20:10:22] 2026-01-28 19:10:17,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535204796224)>', '<ExcThread(monitor, started 140534861514496)>']
[2026-01-28 20:10:22] 2026-01-28 19:10:17,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 20:10:22] 2026-01-28 19:10:17,758 | INFO     | [monitor] control thread has ended
[2026-01-28 20:10:22] 2026-01-28 19:10:22,595 | INFO     | all workflow threads have been joined
[2026-01-28 20:10:22] 2026-01-28 19:10:22,595 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 20:10:22] 2026-01-28 19:10:22,595 | INFO     | traces error code: 0
[2026-01-28 20:10:22] 2026-01-28 19:10:22,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 20:10:22] 2026-01-28 19:10:22,645 [wrapper] ==== pilot stdout END ====
[2026-01-28 20:10:22] 2026-01-28 19:10:22,648 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 20:10:22] 2026-01-28 19:10:22,650 [wrapper] pilotpid: 3166539
[2026-01-28 20:10:22] 2026-01-28 19:10:22,652 [wrapper] Pilot exit status: 0
[2026-01-28 20:10:22] 2026-01-28 19:10:22,660 [wrapper] pandaids: 6985349609
[2026-01-28 20:10:22] 2026-01-28 19:10:22,677 [wrapper] cleanup supervisor_pilot 3176466 3166540
[2026-01-28 20:10:22] 2026-01-28 19:10:22,680 [wrapper] Test setup, not cleaning
[2026-01-28 20:10:22] 2026-01-28 19:10:22,682 [wrapper] apfmon messages muted
[2026-01-28 20:10:22] 2026-01-28 19:10:22,685 [wrapper] ==== wrapper stdout END ====
[2026-01-28 20:10:22] 2026-01-28 19:10:22,687 [wrapper] ==== wrapper stderr END ====
[2026-01-28 20:10:22]  *** Error codes and diagnostics ***
[2026-01-28 20:10:22]     "exeErrorCode": 0,
[2026-01-28 20:10:22]     "exeErrorDiag": "",
[2026-01-28 20:10:22]     "pilotErrorCode": 0,
[2026-01-28 20:10:22]     "pilotErrorDiag": "",
[2026-01-28 20:10:22]  *** Listing of results directory ***
[2026-01-28 20:10:22] total 670004
[2026-01-28 20:10:22] -rwx------ 1 boinc boinc     36322 Jan 28 13:31 runpilot2-wrapper.sh
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:33 pilot3.tar.gz
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:37 queuedata.json
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc       100 Jan 28 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 20:10:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 18:48 run_atlas
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc       105 Jan 28 18:48 job.xml
[2026-01-28 20:10:22] -rw-r--r-- 2 boinc boinc 494575913 Jan 28 18:48 EVNT.48317869._000116.pool.root.1
[2026-01-28 20:10:22] -rw-r--r-- 2 boinc boinc    597759 Jan 28 18:48 input.tar.gz
[2026-01-28 20:10:22] -rw-r--r-- 2 boinc boinc     15845 Jan 28 18:48 start_atlas.sh
[2026-01-28 20:10:22] drwxrwx--x 2 boinc boinc      4096 Jan 28 18:48 shared
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc         0 Jan 28 18:48 boinc_setup_complete
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc      6445 Jan 28 18:48 init_data.xml
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc         0 Jan 28 18:48 boinc_lockfile
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc      2515 Jan 28 18:49 pandaJob.out
[2026-01-28 20:10:22] -rw------- 1 boinc boinc   1005192 Jan 28 18:49 agis_schedconf.cvmfs.json
[2026-01-28 20:10:22] -rw------- 1 boinc boinc   1516246 Jan 28 18:49 agis_ddmendpoints.agis.ALL.json
[2026-01-28 20:10:22] -rw------- 1 boinc boinc       424 Jan 28 18:49 workernode_map.json
[2026-01-28 20:10:22] drwx------ 5 boinc boinc      4096 Jan 28 18:49 pilot3
[2026-01-28 20:10:22] -rw------- 1 boinc boinc        95 Jan 28 20:09 pilot_heartbeat.json
[2026-01-28 20:10:22] -rw------- 1 boinc boinc 185668344 Jan 28 20:09 HITS.48317872._005775.pool.root.1
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc       530 Jan 28 20:09 boinc_task_state.xml
[2026-01-28 20:10:22] -rw------- 1 boinc boinc      1031 Jan 28 20:09 memory_monitor_summary.json
[2026-01-28 20:10:22] -rw------- 1 boinc boinc    239826 Jan 28 20:10 log.48317872._005775.job.log.tgz.1
[2026-01-28 20:10:22] -rw------- 1 boinc boinc      6296 Jan 28 20:10 heartbeat.json
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc      8192 Jan 28 20:10 boinc_mmap_file
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc        27 Jan 28 20:10 wrapper_checkpoint.txt
[2026-01-28 20:10:22] -rw------- 1 boinc boinc      4624 Jan 28 20:10 pilotlog.txt
[2026-01-28 20:10:22] -rw------- 1 boinc boinc    712150 Jan 28 20:10 log.48317872._005775.job.log.1
[2026-01-28 20:10:22] -rw------- 1 boinc boinc       357 Jan 28 20:10 output.list
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc       620 Jan 28 20:10 runtime_log
[2026-01-28 20:10:22] -rw------- 1 boinc boinc    972800 Jan 28 20:10 result.tar.gz
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc      8901 Jan 28 20:10 runtime_log.err
[2026-01-28 20:10:22] -rw------- 1 boinc boinc       658 Jan 28 20:10 IEVMDmnsJ58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmp2FKDm8TK6Mm.diag
[2026-01-28 20:10:22] -rw-r--r-- 1 boinc boinc     11026 Jan 28 20:10 stderr.txt
[2026-01-28 20:10:22] HITS file was successfully produced:
[2026-01-28 20:10:22] -rw------- 1 boinc boinc 185668344 Jan 28 20:09 shared/HITS.pool.root.1
[2026-01-28 20:10:22]  *** Contents of shared directory: ***
[2026-01-28 20:10:22] total 665868
[2026-01-28 20:10:22] -rw-r--r-- 2 boinc boinc 494575913 Jan 28 18:48 ATLAS.root_0
[2026-01-28 20:10:22] -rw-r--r-- 2 boinc boinc    597759 Jan 28 18:48 input.tar.gz
[2026-01-28 20:10:22] -rw-r--r-- 2 boinc boinc     15845 Jan 28 18:48 start_atlas.sh
[2026-01-28 20:10:22] -rw------- 1 boinc boinc 185668344 Jan 28 20:09 HITS.pool.root.1
[2026-01-28 20:10:22] -rw------- 1 boinc boinc    972800 Jan 28 20:10 result.tar.gz
20:10:24 (3162501): run_atlas exited; CPU time 13952.858367
20:10:24 (3162501): called boinc_finish(0)

</stderr_txt>
]]>

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