Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:52:37 (19801): wrapper (7.7.26015): starting
10:52:37 (19801): wrapper: running run_atlas (--nthreads 12)
[2026-01-28 10:52:37] Arguments: --nthreads 12
[2026-01-28 10:52:37] Threads: 12
[2026-01-28 10:52:37] Checking for CVMFS
[2026-01-28 10:52:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 10:52:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 10:52:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 10:52:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 10:52:37] 2.11.2.0 2925 378606 98924 155622 3 188 17051887 20275201 1 130560 1 161285232 99.950 22965634 17050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-28 10:52:37] CVMFS is ok
[2026-01-28 10:52:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 10:52:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 10:52:37] Further information can be found at the LHC@home message board.
[2026-01-28 10:52:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 10:52:37] Checking for apptainer binary...
[2026-01-28 10:52:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 10:52:37] Running /usr/bin/apptainer --version
[2026-01-28 10:52:37] apptainer version 1.3.2-1.el7
[2026-01-28 10:52:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 10:52:39] c-205-9.aglt2.org
[2026-01-28 10:52:39] apptainer works
[2026-01-28 10:52:39] Set ATHENA_PROC_NUMBER=12
[2026-01-28 10:52:39] Set ATHENA_CORE_NUMBER=12
[2026-01-28 10:52:39] Starting ATLAS job with PandaID=6985348025
[2026-01-28 10:52:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 12:05:14]  *** The last 200 lines of the pilot log: ***
[2026-01-28 12:05:14]  filetype=log
[2026-01-28 12:05:14]  guid=60115002-2d92-49b0-9275-d31c5e07f3e4
[2026-01-28 12:05:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-28 12:05:14]  is_altstaged=None
[2026-01-28 12:05:14]  is_tar=False
[2026-01-28 12:05:14]  lfn=log.48317872._005119.job.log.tgz.1
[2026-01-28 12:05:14]  mtime=0
[2026-01-28 12:05:14]  protocol_id=None
[2026-01-28 12:05:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-28 12:05:14]  replicas=None
[2026-01-28 12:05:14]  scope=mc23_13p6TeV
[2026-01-28 12:05:14]  status=None
[2026-01-28 12:05:14]  status_code=0
[2026-01-28 12:05:14]  storage_token=
[2026-01-28 12:05:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6985348025/log.48317872._005119.job.log.tgz.1
[2026-01-28 12:05:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/96/log.48317872._005119.job.log.tgz.1
[2026-01-28 12:05:14]  workdir=None
[2026-01-28 12:05:14] ]
[2026-01-28 12:05:14] 2026-01-28 17:04:37,951 | INFO     | transferring file log.48317872._005119.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6985348025/log.48317872._005119.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-28 12:05:14] 2026-01-28 17:04:37,951 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6985348025/log.48317872._005119.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317872._005119.job
[2026-01-28 12:05:14] 2026-01-28 17:04:37,973 | INFO     | adding to output.list: log.48317872._005119.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/96/log.48317872._005119.job.log.tg
[2026-01-28 12:05:14] 2026-01-28 17:04:37,974 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-28 12:05:14] 2026-01-28 17:04:37,974 | INFO     | summary of transferred files:
[2026-01-28 12:05:14] 2026-01-28 17:04:37,974 | INFO     |  -- lfn=log.48317872._005119.job.log.tgz.1, status_code=0, status=transferred
[2026-01-28 12:05:14] 2026-01-28 17:04:37,974 | INFO     | stage-out finished correctly
[2026-01-28 12:05:14] 2026-01-28 17:04:39,007 | INFO     | time since job start (4300s) is within the limit (349056.0s)
[2026-01-28 12:05:14] 2026-01-28 17:04:39,584 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-28 12:05:14] 2026-01-28 17:04:39,769 | INFO     | monitor loop #327: job 0:6985348025 is in state 'finished'
[2026-01-28 12:05:14] 2026-01-28 17:04:39,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,013 | INFO     | time since job start (4302s) is within the limit (349056.0s)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,595 | INFO     | job 6985348025 has state=finished
[2026-01-28 12:05:14] 2026-01-28 17:04:41,595 | INFO     | preparing for final server update for job 6985348025 in state='finished'
[2026-01-28 12:05:14] 2026-01-28 17:04:41,664 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,665 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6985348025/jobReport.json
[2026-01-28 12:05:14] 2026-01-28 17:04:41,667 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-28 12:05:14] 2026-01-28 17:04:41,667 | INFO     | this job has now completed (state=finished)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,667 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,668 | INFO     | log transfer has been attempted: DONE
[2026-01-28 12:05:14] 2026-01-28 17:04:41,668 | INFO     | job 6985348025 has finished - writing final server update
[2026-01-28 12:05:14] 2026-01-28 17:04:41,668 | INFO     | total number of processed events: 400 (read)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,670 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6985348025/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,670 | INFO     | extracted standard info from prmon json
[2026-01-28 12:05:14] 2026-01-28 17:04:41,670 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 12:05:14] 2026-01-28 17:04:41,670 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 12:05:14] 2026-01-28 17:04:41,671 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 12:05:14] 2026-01-28 17:04:41,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 12:05:14] 2026-01-28 17:04:41,672 | INFO     | fitting pss+swap vs Time
[2026-01-28 12:05:14] 2026-01-28 17:04:41,672 | INFO     | sum of square deviations: 81266640.0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,673 | INFO     | sum of deviations: 1118347526.0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,673 | INFO     | mean x: 1769617829.5
[2026-01-28 12:05:14] 2026-01-28 17:04:41,673 | INFO     | mean y: 2970757.5625
[2026-01-28 12:05:14] 2026-01-28 17:04:41,673 | INFO     | intersect: -24349552265.252453
[2026-01-28 12:05:14] 2026-01-28 17:04:41,673 | INFO     | chi2: 0.001248619817762596
[2026-01-28 12:05:14] 2026-01-28 17:04:41,673 | INFO     | current memory leak: 13.76 B/s (using 64 data points, chi2=0.00)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | ..............................
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | . Timing measurements:
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | . get job = 0 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | . initial setup = 7 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | . payload setup = 7 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | . stage-in = 0 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,674 | INFO     | . payload execution = 4275 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,675 | INFO     | . stage-out = 0 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,675 | INFO     | . log creation = 0 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,675 | INFO     | ..............................
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | 
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | job summary report
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | --------------------------------------------------
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | PanDA job id: 6985348025
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | task id: 48317872
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | errors: (none)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,753 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | pilot state: finished 
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | transexitcode: 0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | exeerrorcode: 0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | exeerrordiag: 
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | exitcode: 0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | exitmsg: OK
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | cpuconsumptiontime: 46899 s
[2026-01-28 12:05:14] 2026-01-28 17:04:41,754 | INFO     | nevents: 400
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | neventsw: 0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | pid: 27927
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | pgrp: 27927
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | corecount: 12
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | event service: False
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | sizes: {0: 2284235, 11: 2284235, 4286: 2310252, 4287: 2319250, 4289: 2319306, 4291: 2319500}
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | --------------------------------------------------
[2026-01-28 12:05:14] 2026-01-28 17:04:41,755 | INFO     | 
[2026-01-28 12:05:14] 2026-01-28 17:04:41,756 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-28 12:05:14] 2026-01-28 17:04:41,780 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,782 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,783 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 12:05:14] 2026-01-28 17:04:41,783 | INFO     | job 6985348025 has completed (purged errors)
[2026-01-28 12:05:14] 2026-01-28 17:04:41,783 | INFO     | overall cleanup function is called
[2026-01-28 12:05:14] 2026-01-28 17:04:42,790 | INFO     | --- collectZombieJob: --- 10, [27927]
[2026-01-28 12:05:14] 2026-01-28 17:04:42,791 | INFO     | zombie collector waiting for pid 27927
[2026-01-28 12:05:14] 2026-01-28 17:04:42,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 12:05:14] 2026-01-28 17:04:42,791 | INFO     | collected zombie processes
[2026-01-28 12:05:14] 2026-01-28 17:04:42,791 | INFO     | will attempt to kill all subprocesses of pid=27927
[2026-01-28 12:05:14] 2026-01-28 17:04:42,879 | INFO     | process IDs to be killed: [27927] (in reverse order)
[2026-01-28 12:05:14] 2026-01-28 17:04:42,932 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 12:05:14] 2026-01-28 17:04:42,933 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 12:05:14] 2026-01-28 17:04:42,936 | INFO     | did not find any defunct processes belonging to 27927
[2026-01-28 12:05:14] 2026-01-28 17:04:42,939 | INFO     | did not find any defunct processes belonging to 27927
[2026-01-28 12:05:14] 2026-01-28 17:04:42,939 | INFO     | ready for new job
[2026-01-28 12:05:14] 2026-01-28 17:04:42,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 12:05:14] 2026-01-28 17:04:42,940 | INFO     | **************************************
[2026-01-28 12:05:14] 2026-01-28 17:04:42,940 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 12:05:14] 2026-01-28 17:04:42,940 | INFO     | **************************************
[2026-01-28 12:05:14] 2026-01-28 17:04:42,941 | INFO     | 
[2026-01-28 12:05:14] 2026-01-28 17:04:42,941 | INFO     | architecture information:
[2026-01-28 12:05:14] 2026-01-28 17:04:42,942 | INFO     | executing command: cat /etc/os-release
[2026-01-28 12:05:14] 2026-01-28 17:04:42,956 | INFO     | cat /etc/os-release:
[2026-01-28 12:05:14] NAME="CentOS Linux"
[2026-01-28 12:05:14] VERSION="7 (Core)"
[2026-01-28 12:05:14] ID="centos"
[2026-01-28 12:05:14] ID_LIKE="rhel fedora"
[2026-01-28 12:05:14] VERSION_ID="7"
[2026-01-28 12:05:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 12:05:14] ANSI_COLOR="0;31"
[2026-01-28 12:05:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 12:05:14] HOME_URL="https://www.centos.org/"
[2026-01-28 12:05:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 12:05:14] 
[2026-01-28 12:05:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 12:05:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 12:05:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 12:05:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 12:05:14] 
[2026-01-28 12:05:14] 2026-01-28 17:04:42,956 | INFO     | **************************************
[2026-01-28 12:05:14] 2026-01-28 17:04:43,458 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-28 12:05:14] 2026-01-28 17:04:43,474 | INFO     | sufficient remaining disk space (28800188416 B)
[2026-01-28 12:05:14] 2026-01-28 17:04:43,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 12:05:14] 2026-01-28 17:04:43,474 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 12:05:14] 2026-01-28 17:04:43,474 | INFO     | update_server=False
[2026-01-28 12:05:14] 2026-01-28 17:04:43,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 12:05:14] 2026-01-28 17:04:43,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 12:05:14] 2026-01-28 17:04:43,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 12:05:14] 2026-01-28 17:04:43,475 | INFO     | aborting loop
[2026-01-28 12:05:14] 2026-01-28 17:04:43,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 12:05:14] 2026-01-28 17:04:44,386 | INFO     | all data control threads have been joined
[2026-01-28 12:05:14] 2026-01-28 17:04:44,480 | INFO     | [job] retrieve thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,481 | INFO     | [job] queue monitor thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,481 | INFO     | [job] job monitor thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,539 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,560 | INFO     | [payload] validate_post thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,595 | INFO     | [payload] failed_post thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,609 | INFO     | [data] copytool_in thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:44,785 | INFO     | all payload control threads have been joined
[2026-01-28 12:05:14] 2026-01-28 17:04:44,805 | INFO     | all job control threads have been joined
[2026-01-28 12:05:14] 2026-01-28 17:04:45,391 | INFO     | [data] control thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:45,505 | INFO     | [job] validate thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:45,570 | INFO     | [data] copytool_out thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:45,600 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:45,670 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 12:05:14] 2026-01-28 17:04:45,789 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:45,791 | INFO     | [payload] control thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:45,808 | INFO     | [job] control thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:49,676 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:04:53,900 | INFO     | job.realtimelogging is not enabled
[2026-01-28 12:05:14] 2026-01-28 17:04:54,906 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 12:05:14] 2026-01-28 17:05:05,723 | INFO     | [monitor] cgroup control has ended
[2026-01-28 12:05:14] 2026-01-28 17:05:07,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547864205120)>', '<ExcThread(monitor, started 140547159222016)>']
[2026-01-28 12:05:14] 2026-01-28 17:05:12,295 | INFO     | all workflow threads have been joined
[2026-01-28 12:05:14] 2026-01-28 17:05:12,295 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 12:05:14] 2026-01-28 17:05:12,296 | INFO     | traces error code: 0
[2026-01-28 12:05:14] 2026-01-28 17:05:12,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 12:05:14] 2026-01-28 17:05:14,219 | INFO     | PID=23492 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-28 12:05:14] 2026-01-28 17:05:14,220 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 12:05:14] 2026-01-28 17:05:14,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 12:05:14] 2026-01-28 17:05:14,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 12:05:14] 2026-01-28 17:05:14,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 12:05:14] 2026-01-28 17:05:14,220 | INFO     | [monitor] control thread has ended
[2026-01-28 12:05:14] 2026-01-28 17:05:14,302 [wrapper] ==== pilot stdout END ====
[2026-01-28 12:05:14] 2026-01-28 17:05:14,307 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 12:05:14] 2026-01-28 17:05:14,310 [wrapper] pilotpid: 23492
[2026-01-28 12:05:14] 2026-01-28 17:05:14,314 [wrapper] Pilot exit status: 0
[2026-01-28 12:05:14] 2026-01-28 17:05:14,330 [wrapper] pandaids: 6985348025
[2026-01-28 12:05:14] 2026-01-28 17:05:14,371 [wrapper] cleanup supervisor_pilot 14137 23493
[2026-01-28 12:05:14] 2026-01-28 17:05:14,375 [wrapper] Test setup, not cleaning
[2026-01-28 12:05:14] 2026-01-28 17:05:14,379 [wrapper] apfmon messages muted
[2026-01-28 12:05:14] 2026-01-28 17:05:14,383 [wrapper] ==== wrapper stdout END ====
[2026-01-28 12:05:14] 2026-01-28 17:05:14,386 [wrapper] ==== wrapper stderr END ====
[2026-01-28 12:05:14]  *** Error codes and diagnostics ***
[2026-01-28 12:05:14]     "exeErrorCode": 0,
[2026-01-28 12:05:14]     "exeErrorDiag": "",
[2026-01-28 12:05:14]     "pilotErrorCode": 0,
[2026-01-28 12:05:14]     "pilotErrorDiag": "",
[2026-01-28 12:05:14]  *** Listing of results directory ***
[2026-01-28 12:05:14] total 670812
[2026-01-28 12:05:14] -rwx------ 1 boincer umatlas     36322 Jan 28 07:28 runpilot2-wrapper.sh
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas      5111 Jan 28 07:33 queuedata.json
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas    584422 Jan 28 07:33 pilot3.tar.gz
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas       100 Jan 28 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 12:05:14] -rwxr-xr-x 1 boincer umatlas      7986 Jan 28 10:52 run_atlas
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas       105 Jan 28 10:52 job.xml
[2026-01-28 12:05:14] -rw-r--r-- 2 boincer umatlas 496358516 Jan 28 10:52 EVNT.48317869._000102.pool.root.1
[2026-01-28 12:05:14] -rw-r--r-- 2 boincer umatlas     15845 Jan 28 10:52 start_atlas.sh
[2026-01-28 12:05:14] drwxrwx--x 2 boincer umatlas      4096 Jan 28 10:52 shared
[2026-01-28 12:05:14] -rw-r--r-- 2 boincer umatlas    597761 Jan 28 10:52 input.tar.gz
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas         0 Jan 28 10:52 boinc_lockfile
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas      2516 Jan 28 10:52 pandaJob.out
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas        57 Jan 28 10:52 setup.sh.local
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas   1005192 Jan 28 10:52 agis_schedconf.cvmfs.json
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas   1516246 Jan 28 10:52 agis_ddmendpoints.agis.ALL.json
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas       433 Jan 28 10:52 workernode_map.json
[2026-01-28 12:05:14] drwx------ 5 boincer umatlas      4096 Jan 28 10:52 pilot3
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas      5952 Jan 28 12:03 init_data.xml
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas 184517895 Jan 28 12:04 HITS.48317872._005119.pool.root.1
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas       530 Jan 28 12:04 boinc_task_state.xml
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas      1041 Jan 28 12:04 memory_monitor_summary.json
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas    420306 Jan 28 12:04 log.48317872._005119.job.log.tgz.1
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas      6393 Jan 28 12:04 heartbeat.json
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas      8192 Jan 28 12:05 boinc_mmap_file
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas        95 Jan 28 12:05 pilot_heartbeat.json
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas       745 Jan 28 12:05 pilotlog.txt
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas        27 Jan 28 12:05 wrapper_checkpoint.txt
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas    628663 Jan 28 12:05 log.48317872._005119.job.log.1
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas       357 Jan 28 12:05 output.list
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas       620 Jan 28 12:05 runtime_log
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas   1064960 Jan 28 12:05 result.tar.gz
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas      9338 Jan 28 12:05 runtime_log.err
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas       655 Jan 28 12:05 0BDMDmqpJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmBuFKDmfArECo.diag
[2026-01-28 12:05:14] -rw-r--r-- 1 boincer umatlas     21258 Jan 28 12:05 stderr.txt
[2026-01-28 12:05:14] HITS file was successfully produced:
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas 184517895 Jan 28 12:04 shared/HITS.pool.root.1
[2026-01-28 12:05:14]  *** Contents of shared directory: ***
[2026-01-28 12:05:14] total 666568
[2026-01-28 12:05:14] -rw-r--r-- 2 boincer umatlas 496358516 Jan 28 10:52 ATLAS.root_0
[2026-01-28 12:05:14] -rw-r--r-- 2 boincer umatlas     15845 Jan 28 10:52 start_atlas.sh
[2026-01-28 12:05:14] -rw-r--r-- 2 boincer umatlas    597761 Jan 28 10:52 input.tar.gz
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas 184517895 Jan 28 12:04 HITS.pool.root.1
[2026-01-28 12:05:14] -rw------- 1 boincer umatlas   1064960 Jan 28 12:05 result.tar.gz
12:05:16 (19801): run_atlas exited; CPU time 46886.696147
12:05:16 (19801): called boinc_finish(0)

</stderr_txt>
]]>

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