Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:41:18 (71166): wrapper (7.7.26015): starting
22:41:18 (71166): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 22:41:18] Arguments: --nthreads 4
[2026-01-28 22:41:18] Threads: 4
[2026-01-28 22:41:18] Checking for CVMFS
[2026-01-28 22:41:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 22:41:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 22:41:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 22:41:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 22:41:18] 2.9.2.0 3102 242 64676 155626 1 187 30682914 36864001 0 130560 0 184330 99.997 4147 2120 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 22:41:18] CVMFS is ok
[2026-01-28 22:41:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 22:41:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 22:41:18] Further information can be found at the LHC@home message board.
[2026-01-28 22:41:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 22:41:18] Checking for apptainer binary...
[2026-01-28 22:41:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 22:41:18] Running /usr/bin/apptainer --version
[2026-01-28 22:41:18] apptainer version 1.4.1-1.1
[2026-01-28 22:41:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 22:41:18] thA373a
[2026-01-28 22:41:18] apptainer works
[2026-01-28 22:41:18] Set ATHENA_PROC_NUMBER=4
[2026-01-28 22:41:18] Set ATHENA_CORE_NUMBER=4
[2026-01-28 22:41:18] Starting ATLAS job with PandaID=6985348778
[2026-01-28 22:41:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 23:54:40]  *** The last 200 lines of the pilot log: ***
[2026-01-28 23:54:40] 2026-01-28 22:53:35,375 | INFO     | job 6985348778 has completed (purged errors)
[2026-01-28 23:54:40] 2026-01-28 22:53:35,375 | INFO     | overall cleanup function is called
[2026-01-28 23:54:40] 2026-01-28 22:53:36,382 | INFO     | --- collectZombieJob: --- 10, [79473]
[2026-01-28 23:54:40] 2026-01-28 22:53:36,382 | INFO     | zombie collector waiting for pid 79473
[2026-01-28 23:54:40] 2026-01-28 22:53:36,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 23:54:40] 2026-01-28 22:53:36,382 | INFO     | collected zombie processes
[2026-01-28 23:54:40] 2026-01-28 22:53:36,382 | INFO     | will attempt to kill all subprocesses of pid=79473
[2026-01-28 23:54:40] 2026-01-28 22:53:36,424 | INFO     | process IDs to be killed: [79473] (in reverse order)
[2026-01-28 23:54:40] 2026-01-28 22:53:36,458 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 23:54:40] 2026-01-28 22:53:36,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 23:54:40] 2026-01-28 22:53:36,459 | INFO     | did not find any defunct processes belonging to 79473
[2026-01-28 23:54:40] 2026-01-28 22:53:36,460 | INFO     | did not find any defunct processes belonging to 79473
[2026-01-28 23:54:40] 2026-01-28 22:53:36,461 | INFO     | ready for new job
[2026-01-28 23:54:40] 2026-01-28 22:53:36,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 23:54:40] 2026-01-28 22:53:36,461 | INFO     | **************************************
[2026-01-28 23:54:40] 2026-01-28 22:53:36,461 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 23:54:40] 2026-01-28 22:53:36,461 | INFO     | **************************************
[2026-01-28 23:54:40] 2026-01-28 22:53:36,461 | INFO     | 
[2026-01-28 23:54:40] 2026-01-28 22:53:36,462 | INFO     | architecture information:
[2026-01-28 23:54:40] 2026-01-28 22:53:36,462 | INFO     | executing command: cat /etc/os-release
[2026-01-28 23:54:40] 2026-01-28 22:53:36,477 | INFO     | cat /etc/os-release:
[2026-01-28 23:54:40] NAME="CentOS Linux"
[2026-01-28 23:54:40] VERSION="7 (Core)"
[2026-01-28 23:54:40] ID="centos"
[2026-01-28 23:54:40] ID_LIKE="rhel fedora"
[2026-01-28 23:54:40] VERSION_ID="7"
[2026-01-28 23:54:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 23:54:40] ANSI_COLOR="0;31"
[2026-01-28 23:54:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 23:54:40] HOME_URL="https://www.centos.org/"
[2026-01-28 23:54:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 23:54:40] 
[2026-01-28 23:54:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 23:54:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 23:54:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 23:54:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 23:54:40] 
[2026-01-28 23:54:40] 2026-01-28 22:53:36,477 | INFO     | **************************************
[2026-01-28 23:54:40] 2026-01-28 22:53:36,980 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 23:54:40] 2026-01-28 22:53:36,999 | INFO     | sufficient remaining disk space (326262325248 B)
[2026-01-28 23:54:40] 2026-01-28 22:53:36,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 23:54:40] 2026-01-28 22:53:36,999 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 23:54:40] 2026-01-28 22:53:36,999 | INFO     | update_server=False
[2026-01-28 23:54:40] 2026-01-28 22:53:36,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 23:54:40] 2026-01-28 22:53:36,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | INFO     | aborting loop
[2026-01-28 23:54:40] 2026-01-28 22:53:37,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 23:54:40] 2026-01-28 22:53:37,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 23:54:40] 2026-01-28 22:53:37,251 | INFO     | all payload control threads have been joined
[2026-01-28 23:54:40] 2026-01-28 22:53:38,005 | INFO     | [job] retrieve thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:38,005 | INFO     | [job] queue monitor thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:38,006 | INFO     | [job] job monitor thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:38,035 | INFO     | all job control threads have been joined
[2026-01-28 23:54:40] 2026-01-28 22:53:38,044 | INFO     | [payload] failed_post thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:38,086 | INFO     | [data] copytool_in thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:38,101 | INFO     | all data control threads have been joined
[2026-01-28 23:54:40] 2026-01-28 22:53:38,257 | INFO     | [payload] control thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:38,910 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,041 | INFO     | [job] control thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,107 | INFO     | [data] control thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,108 | INFO     | [data] copytool_out thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,243 | INFO     | [job] validate thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,245 | INFO     | [payload] validate_post thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,345 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:39,378 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:41,007 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:53:47,209 | INFO     | job.realtimelogging is not enabled
[2026-01-28 23:54:40] 2026-01-28 22:53:48,214 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 23:54:40] 2026-01-28 22:54:34,921 | INFO     | [monitor] cgroup control has ended
[2026-01-28 23:54:40] 2026-01-28 22:54:34,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987139381056)>', '<ExcThread(monitor, started 139986070402816)>']
[2026-01-28 23:54:40] 2026-01-28 22:54:35,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 23:54:40] 2026-01-28 22:54:35,301 | INFO     | [monitor] control thread has ended
[2026-01-28 23:54:40] 2026-01-28 22:54:39,979 | INFO     | all workflow threads have been joined
[2026-01-28 23:54:40] 2026-01-28 22:54:39,980 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 23:54:40] 2026-01-28 22:54:39,980 | INFO     | traces error code: 0
[2026-01-28 23:54:40] 2026-01-28 22:54:39,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 23:54:40] 2026-01-28 22:54:40,058 [wrapper] ==== pilot stdout END ====
[2026-01-28 23:54:40] 2026-01-28 22:54:40,062 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 23:54:40] 2026-01-28 22:54:40,066 [wrapper] pilotpid: 74965
[2026-01-28 23:54:40] 2026-01-28 22:54:40,071 [wrapper] Pilot exit status: 0
[2026-01-28 23:54:40] 2026-01-28 22:54:40,082 [wrapper] pandaids: 6985348778
[2026-01-28 23:54:40] 2026-01-28 22:54:40,106 [wrapper] cleanup supervisor_pilot   84520 74966
[2026-01-28 23:54:40] 2026-01-28 22:54:40,110 [wrapper] Test setup, not cleaning
[2026-01-28 23:54:40] 2026-01-28 22:54:40,114 [wrapper] apfmon messages muted
[2026-01-28 23:54:40] 2026-01-28 22:54:40,118 [wrapper] ==== wrapper stdout END ====
[2026-01-28 23:54:40] 2026-01-28 22:54:40,121 [wrapper] ==== wrapper stderr END ====
[2026-01-28 23:54:40]  *** Error codes and diagnostics ***
[2026-01-28 23:54:40]     "exeErrorCode": 0,
[2026-01-28 23:54:40]     "exeErrorDiag": "",
[2026-01-28 23:54:40]     "pilotErrorCode": 0,
[2026-01-28 23:54:40]     "pilotErrorDiag": "",
[2026-01-28 23:54:40]  *** Listing of results directory ***
[2026-01-28 23:54:40] total 661860
[2026-01-28 23:54:40] -rwx------ 1 boinc boinc     36322 Jan 28 13:28 runpilot2-wrapper.sh
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:33 pilot3.tar.gz
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:35 queuedata.json
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc       100 Jan 28 22:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 23:54:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 22:41 run_atlas
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc       105 Jan 28 22:41 job.xml
[2026-01-28 23:54:40] -rw-r--r-- 2 boinc boinc 491915904 Jan 28 22:41 EVNT.48317869._000109.pool.root.1
[2026-01-28 23:54:40] drwxrwx--x 2 boinc boinc      4096 Jan 28 22:41 shared
[2026-01-28 23:54:40] -rw-r--r-- 2 boinc boinc    597755 Jan 28 22:41 input.tar.gz
[2026-01-28 23:54:40] -rw-r--r-- 2 boinc boinc     15845 Jan 28 22:41 start_atlas.sh
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc         0 Jan 28 22:41 boinc_setup_complete
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc      6377 Jan 28 22:41 init_data.xml
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc         0 Jan 28 22:41 boinc_lockfile
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc      2515 Jan 28 22:41 pandaJob.out
[2026-01-28 23:54:40] -rw------- 1 boinc boinc   1005755 Jan 28 22:41 agis_schedconf.cvmfs.json
[2026-01-28 23:54:40] -rw------- 1 boinc boinc   1516246 Jan 28 22:41 agis_ddmendpoints.agis.ALL.json
[2026-01-28 23:54:40] -rw------- 1 boinc boinc       428 Jan 28 22:41 workernode_map.json
[2026-01-28 23:54:40] drwx------ 5 boinc boinc      4096 Jan 28 22:41 pilot3
[2026-01-28 23:54:40] -rw------- 1 boinc boinc        95 Jan 28 23:52 pilot_heartbeat.json
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc       530 Jan 28 23:53 boinc_task_state.xml
[2026-01-28 23:54:40] -rw------- 1 boinc boinc 180035512 Jan 28 23:53 HITS.48317872._005462.pool.root.1
[2026-01-28 23:54:40] -rw------- 1 boinc boinc      1023 Jan 28 23:53 memory_monitor_summary.json
[2026-01-28 23:54:40] -rw------- 1 boinc boinc    292616 Jan 28 23:53 log.48317872._005462.job.log.tgz.1
[2026-01-28 23:54:40] -rw------- 1 boinc boinc      6312 Jan 28 23:53 heartbeat.json
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc      8192 Jan 28 23:54 boinc_mmap_file
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc        27 Jan 28 23:54 wrapper_checkpoint.txt
[2026-01-28 23:54:40] -rw------- 1 boinc boinc      4624 Jan 28 23:54 pilotlog.txt
[2026-01-28 23:54:40] -rw------- 1 boinc boinc    638570 Jan 28 23:54 log.48317872._005462.job.log.1
[2026-01-28 23:54:40] -rw------- 1 boinc boinc       357 Jan 28 23:54 output.list
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc       620 Jan 28 23:54 runtime_log
[2026-01-28 23:54:40] -rw------- 1 boinc boinc    952320 Jan 28 23:54 result.tar.gz
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc      8901 Jan 28 23:54 runtime_log.err
[2026-01-28 23:54:40] -rw------- 1 boinc boinc       658 Jan 28 23:54 266NDm0pJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmuvFKDmRbhhZn.diag
[2026-01-28 23:54:40] -rw-r--r-- 1 boinc boinc     10799 Jan 28 23:54 stderr.txt
[2026-01-28 23:54:40] HITS file was successfully produced:
[2026-01-28 23:54:40] -rw------- 1 boinc boinc 180035512 Jan 28 23:53 shared/HITS.pool.root.1
[2026-01-28 23:54:40]  *** Contents of shared directory: ***
[2026-01-28 23:54:40] total 657744
[2026-01-28 23:54:40] -rw-r--r-- 2 boinc boinc 491915904 Jan 28 22:41 ATLAS.root_0
[2026-01-28 23:54:40] -rw-r--r-- 2 boinc boinc    597755 Jan 28 22:41 input.tar.gz
[2026-01-28 23:54:40] -rw-r--r-- 2 boinc boinc     15845 Jan 28 22:41 start_atlas.sh
[2026-01-28 23:54:40] -rw------- 1 boinc boinc 180035512 Jan 28 23:53 HITS.pool.root.1
[2026-01-28 23:54:40] -rw------- 1 boinc boinc    952320 Jan 28 23:54 result.tar.gz
23:54:41 (71166): run_atlas exited; CPU time 16321.152751
23:54:41 (71166): called boinc_finish(0)

</stderr_txt>
]]>

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