Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:46 (1381798): wrapper (7.7.26015): starting
16:41:46 (1381798): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 16:41:46] Arguments: --nthreads 3
[2026-01-28 16:41:46] Threads: 3
[2026-01-28 16:41:46] Checking for CVMFS
[2026-01-28 16:41:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 16:41:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 16:41:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 16:41:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 16:41:47] 2.9.2.0 1381994 0 29996 155622 4 1 25261077 36864001 0 130560 0 0 0.000 1336 5685 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 16:41:47] CVMFS is ok
[2026-01-28 16:41:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 16:41:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 16:41:47] Further information can be found at the LHC@home message board.
[2026-01-28 16:41:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 16:41:47] Checking for apptainer binary...
[2026-01-28 16:41:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 16:41:47] Running /usr/bin/apptainer --version
[2026-01-28 16:41:47] apptainer version 1.4.1-1.1
[2026-01-28 16:41:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 16:41:48] magicA161a
[2026-01-28 16:41:48] apptainer works
[2026-01-28 16:41:48] Set ATHENA_PROC_NUMBER=3
[2026-01-28 16:41:48] Set ATHENA_CORE_NUMBER=3
[2026-01-28 16:41:48] Starting ATLAS job with PandaID=6985341808
[2026-01-28 16:41:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 18:10:22]  *** The last 200 lines of the pilot log: ***
[2026-01-28 18:10:22] 2026-01-28 17:09:51,948 | INFO     | zombie collector waiting for pid 1390491
[2026-01-28 18:10:22] 2026-01-28 17:09:51,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 18:10:22] 2026-01-28 17:09:51,948 | INFO     | collected zombie processes
[2026-01-28 18:10:22] 2026-01-28 17:09:51,948 | INFO     | will attempt to kill all subprocesses of pid=1390491
[2026-01-28 18:10:22] 2026-01-28 17:09:51,989 | INFO     | process IDs to be killed: [1390491] (in reverse order)
[2026-01-28 18:10:22] 2026-01-28 17:09:52,012 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 18:10:22] 2026-01-28 17:09:52,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 18:10:22] 2026-01-28 17:09:52,014 | INFO     | did not find any defunct processes belonging to 1390491
[2026-01-28 18:10:22] 2026-01-28 17:09:52,015 | INFO     | did not find any defunct processes belonging to 1390491
[2026-01-28 18:10:22] 2026-01-28 17:09:52,015 | INFO     | ready for new job
[2026-01-28 18:10:22] 2026-01-28 17:09:52,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 18:10:22] 2026-01-28 17:09:52,016 | INFO     | **************************************
[2026-01-28 18:10:22] 2026-01-28 17:09:52,016 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 18:10:22] 2026-01-28 17:09:52,016 | INFO     | **************************************
[2026-01-28 18:10:22] 2026-01-28 17:09:52,016 | INFO     | 
[2026-01-28 18:10:22] 2026-01-28 17:09:52,016 | INFO     | architecture information:
[2026-01-28 18:10:22] 2026-01-28 17:09:52,016 | INFO     | executing command: cat /etc/os-release
[2026-01-28 18:10:22] 2026-01-28 17:09:52,025 | INFO     | cat /etc/os-release:
[2026-01-28 18:10:22] NAME="CentOS Linux"
[2026-01-28 18:10:22] VERSION="7 (Core)"
[2026-01-28 18:10:22] ID="centos"
[2026-01-28 18:10:22] ID_LIKE="rhel fedora"
[2026-01-28 18:10:22] VERSION_ID="7"
[2026-01-28 18:10:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 18:10:22] ANSI_COLOR="0;31"
[2026-01-28 18:10:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 18:10:22] HOME_URL="https://www.centos.org/"
[2026-01-28 18:10:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 18:10:22] 
[2026-01-28 18:10:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 18:10:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 18:10:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 18:10:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 18:10:22] 
[2026-01-28 18:10:22] 2026-01-28 17:09:52,025 | INFO     | **************************************
[2026-01-28 18:10:22] 2026-01-28 17:09:52,528 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 18:10:22] 2026-01-28 17:09:52,541 | INFO     | sufficient remaining disk space (380131868672 B)
[2026-01-28 18:10:22] 2026-01-28 17:09:52,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 18:10:22] 2026-01-28 17:09:52,541 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 18:10:22] 2026-01-28 17:09:52,541 | INFO     | update_server=False
[2026-01-28 18:10:22] 2026-01-28 17:09:52,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 18:10:22] 2026-01-28 17:09:52,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:10:22] 2026-01-28 17:09:52,706 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 18:10:22] 2026-01-28 17:09:52,706 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 18:10:22] 2026-01-28 17:09:52,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:10:22] 2026-01-28 17:09:52,706 | INFO     | will abort loop
[2026-01-28 18:10:22] 2026-01-28 17:09:52,729 | INFO     | all job control threads have been joined
[2026-01-28 18:10:22] 2026-01-28 17:09:52,799 | INFO     | all data control threads have been joined
[2026-01-28 18:10:22] 2026-01-28 17:09:53,004 | INFO     | all payload control threads have been joined
[2026-01-28 18:10:22] 2026-01-28 17:09:53,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 18:10:22] 2026-01-28 17:09:53,547 | INFO     | [job] queue monitor thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:53,547 | INFO     | [job] retrieve thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:53,712 | INFO     | [job] job monitor thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:53,735 | INFO     | [job] control thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:53,805 | INFO     | [data] control thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:53,805 | INFO     | [payload] validate_post thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,009 | INFO     | [payload] control thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,119 | INFO     | [payload] failed_post thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 18:10:22] 2026-01-28 17:09:54,534 | INFO     | [job] validate thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,605 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,609 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,754 | INFO     | [data] copytool_in thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:54,788 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:55,106 | INFO     | [data] copytool_out thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:09:58,307 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:10:02,849 | INFO     | job.realtimelogging is not enabled
[2026-01-28 18:10:22] 2026-01-28 17:10:03,854 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 18:10:22] 2026-01-28 17:10:04,290 | INFO     | [monitor] cgroup control has ended
[2026-01-28 18:10:22] 2026-01-28 17:10:06,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622626068288)>', '<ExcThread(monitor, started 140621834602240)>']
[2026-01-28 18:10:22] 2026-01-28 17:10:11,190 | INFO     | all workflow threads have been joined
[2026-01-28 18:10:22] 2026-01-28 17:10:11,190 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 18:10:22] 2026-01-28 17:10:11,190 | INFO     | traces error code: 0
[2026-01-28 18:10:22] 2026-01-28 17:10:11,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 18:10:22] 2026-01-28 17:10:22,698 | INFO     | PID=1386066 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 18:10:22] 2026-01-28 17:10:22,698 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 18:10:22] 2026-01-28 17:10:22,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 18:10:22] 2026-01-28 17:10:22,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 18:10:22] 2026-01-28 17:10:22,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 18:10:22] 2026-01-28 17:10:22,698 | INFO     | [monitor] control thread has ended
[2026-01-28 18:10:22] 2026-01-28 17:10:22,742 [wrapper] ==== pilot stdout END ====
[2026-01-28 18:10:22] 2026-01-28 17:10:22,744 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 18:10:22] 2026-01-28 17:10:22,746 [wrapper] pilotpid: 1386066
[2026-01-28 18:10:22] 2026-01-28 17:10:22,748 [wrapper] Pilot exit status: 0
[2026-01-28 18:10:22] 2026-01-28 17:10:22,755 [wrapper] pandaids: 6985341808
[2026-01-28 18:10:22] 2026-01-28 17:10:22,771 [wrapper] cleanup supervisor_pilot 1395588 1386067
[2026-01-28 18:10:22] 2026-01-28 17:10:22,773 [wrapper] Test setup, not cleaning
[2026-01-28 18:10:22] 2026-01-28 17:10:22,775 [wrapper] apfmon messages muted
[2026-01-28 18:10:22] 2026-01-28 17:10:22,778 [wrapper] ==== wrapper stdout END ====
[2026-01-28 18:10:22] 2026-01-28 17:10:22,780 [wrapper] ==== wrapper stderr END ====
[2026-01-28 18:10:22]  *** Error codes and diagnostics ***
[2026-01-28 18:10:22]     "exeErrorCode": 0,
[2026-01-28 18:10:22]     "exeErrorDiag": "",
[2026-01-28 18:10:22]     "pilotErrorCode": 0,
[2026-01-28 18:10:22]     "pilotErrorDiag": "",
[2026-01-28 18:10:22]  *** Listing of results directory ***
[2026-01-28 18:10:22] total 725644
[2026-01-28 18:10:22] -rwx------ 1 boinc boinc     36322 Jan 28 13:28 runpilot2-wrapper.sh
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:33 pilot3.tar.gz
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:35 queuedata.json
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc       100 Jan 28 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 18:10:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 16:41 run_atlas
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc       105 Jan 28 16:41 job.xml
[2026-01-28 18:10:22] -rw-r--r-- 2 boinc boinc 532678491 Jan 28 16:41 EVNT.48317909._000102.pool.root.1
[2026-01-28 18:10:22] drwxrwx--x 2 boinc boinc      4096 Jan 28 16:41 shared
[2026-01-28 18:10:22] -rw-r--r-- 2 boinc boinc    597764 Jan 28 16:41 input.tar.gz
[2026-01-28 18:10:22] -rw-r--r-- 2 boinc boinc     15845 Jan 28 16:41 start_atlas.sh
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc         0 Jan 28 16:41 boinc_setup_complete
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc      6448 Jan 28 16:41 init_data.xml
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc         0 Jan 28 16:41 boinc_lockfile
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc      2502 Jan 28 16:41 pandaJob.out
[2026-01-28 18:10:22] -rw------- 1 boinc boinc   1005192 Jan 28 16:41 agis_schedconf.cvmfs.json
[2026-01-28 18:10:22] -rw------- 1 boinc boinc   1516246 Jan 28 16:41 agis_ddmendpoints.agis.ALL.json
[2026-01-28 18:10:22] -rw------- 1 boinc boinc       419 Jan 28 16:41 workernode_map.json
[2026-01-28 18:10:22] drwx------ 5 boinc boinc      4096 Jan 28 16:41 pilot3
[2026-01-28 18:10:22] -rw------- 1 boinc boinc 204335585 Jan 28 18:09 HITS.48317911._005117.pool.root.1
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc       530 Jan 28 18:09 boinc_task_state.xml
[2026-01-28 18:10:22] -rw------- 1 boinc boinc      1011 Jan 28 18:09 memory_monitor_summary.json
[2026-01-28 18:10:22] -rw------- 1 boinc boinc    291315 Jan 28 18:09 log.48317911._005117.job.log.tgz.1
[2026-01-28 18:10:22] -rw------- 1 boinc boinc      6287 Jan 28 18:09 heartbeat.json
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc      8192 Jan 28 18:09 boinc_mmap_file
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc        27 Jan 28 18:09 wrapper_checkpoint.txt
[2026-01-28 18:10:22] -rw------- 1 boinc boinc       747 Jan 28 18:10 pilotlog.txt
[2026-01-28 18:10:22] -rw------- 1 boinc boinc        95 Jan 28 18:10 pilot_heartbeat.json
[2026-01-28 18:10:22] -rw------- 1 boinc boinc    769966 Jan 28 18:10 log.48317911._005117.job.log.1
[2026-01-28 18:10:22] -rw------- 1 boinc boinc       357 Jan 28 18:10 output.list
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc       620 Jan 28 18:10 runtime_log
[2026-01-28 18:10:22] -rw------- 1 boinc boinc   1075200 Jan 28 18:10 result.tar.gz
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc      8916 Jan 28 18:10 runtime_log.err
[2026-01-28 18:10:22] -rw------- 1 boinc boinc       661 Jan 28 18:10 dglKDmCqJ58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiwFKDmPHeu9n.diag
[2026-01-28 18:10:22] -rw-r--r-- 1 boinc boinc     10826 Jan 28 18:10 stderr.txt
[2026-01-28 18:10:22] HITS file was successfully produced:
[2026-01-28 18:10:22] -rw------- 1 boinc boinc 204335585 Jan 28 18:09 shared/HITS.pool.root.1
[2026-01-28 18:10:22]  *** Contents of shared directory: ***
[2026-01-28 18:10:22] total 721404
[2026-01-28 18:10:22] -rw-r--r-- 2 boinc boinc 532678491 Jan 28 16:41 ATLAS.root_0
[2026-01-28 18:10:22] -rw-r--r-- 2 boinc boinc    597764 Jan 28 16:41 input.tar.gz
[2026-01-28 18:10:22] -rw-r--r-- 2 boinc boinc     15845 Jan 28 16:41 start_atlas.sh
[2026-01-28 18:10:22] -rw------- 1 boinc boinc 204335585 Jan 28 18:09 HITS.pool.root.1
[2026-01-28 18:10:22] -rw------- 1 boinc boinc   1075200 Jan 28 18:10 result.tar.gz
18:10:24 (1381798): run_atlas exited; CPU time 15157.670480
18:10:24 (1381798): called boinc_finish(0)

</stderr_txt>
]]>

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