Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:01:18 (30663): wrapper (7.7.26015): starting
20:01:18 (30663): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 20:01:18] Arguments: --nthreads 8
[2026-01-28 20:01:18] Threads: 8
[2026-01-28 20:01:18] Checking for CVMFS
[2026-01-28 20:01:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 20:01:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 20:01:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 20:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 20:01:22] 2.11.2.0 6102 63169 145132 155622 3 570 22777932 25165824 899 130560 0 22509014 99.842 12498811 2906 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-28 20:01:22] CVMFS is ok
[2026-01-28 20:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 20:01:22] Checking for apptainer binary...
[2026-01-28 20:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 20:01:22] Running /usr/bin/apptainer --version
[2026-01-28 20:01:22] apptainer version 1.3.2-1.el7
[2026-01-28 20:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 20:01:51] cg-vwn406.simple-grid.lan
[2026-01-28 20:01:51] apptainer works
[2026-01-28 20:01:51] Set ATHENA_PROC_NUMBER=8
[2026-01-28 20:01:51] Set ATHENA_CORE_NUMBER=8
[2026-01-28 20:01:51] Starting ATLAS job with PandaID=6985339707
[2026-01-28 20:01:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 00:50:20]  *** The last 200 lines of the pilot log: ***
[2026-01-29 00:50:20] 2026-01-28 23:49:08,839 | INFO     | total number of processed events: 400 (read)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,841 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6985339707/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,846 | INFO     | extracted standard info from prmon json
[2026-01-29 00:50:20] 2026-01-28 23:49:08,846 | INFO     | extracted standard memory fields from prmon json
[2026-01-29 00:50:20] 2026-01-28 23:49:08,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-29 00:50:20] 2026-01-28 23:49:08,847 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-29 00:50:20] 2026-01-28 23:49:08,847 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-29 00:50:20] 2026-01-28 23:49:08,852 | INFO     | fitting pss+swap vs Time
[2026-01-29 00:50:20] 2026-01-28 23:49:08,853 | INFO     | sum of square deviations: 6239923508.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,856 | INFO     | sum of deviations: 110625244691.49998
[2026-01-29 00:50:20] 2026-01-28 23:49:08,856 | INFO     | mean x: 1769635809.5
[2026-01-29 00:50:20] 2026-01-28 23:49:08,856 | INFO     | mean y: 2456161.150735294
[2026-01-29 00:50:20] 2026-01-28 23:49:08,856 | INFO     | intersect: -31370748043.963722
[2026-01-29 00:50:20] 2026-01-28 23:49:08,857 | INFO     | chi2: 8.954281911914856
[2026-01-29 00:50:20] 2026-01-28 23:49:08,857 | INFO     | sum of square deviations: 5902093918.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,860 | INFO     | sum of deviations: 127047791236.00002
[2026-01-29 00:50:20] 2026-01-28 23:49:08,860 | INFO     | mean x: 1769635657.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,860 | INFO     | mean y: 2463449.5131086144
[2026-01-29 00:50:20] 2026-01-28 23:49:08,861 | INFO     | intersect: -38090509084.970665
[2026-01-29 00:50:20] 2026-01-28 23:49:08,861 | INFO     | chi2: 8.224778156875653
[2026-01-29 00:50:20] 2026-01-28 23:49:08,861 | INFO     | current chi2=8.224778156875653 (change=8.146982217172576 %)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,861 | INFO     | right removable region: 266
[2026-01-29 00:50:20] 2026-01-28 23:49:08,862 | INFO     | sum of square deviations: 5902093918.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,864 | INFO     | sum of deviations: 15052682324.000004
[2026-01-29 00:50:20] 2026-01-28 23:49:08,865 | INFO     | mean x: 1769635962.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,865 | INFO     | mean y: 2499279.4644194758
[2026-01-29 00:50:20] 2026-01-28 23:49:08,865 | INFO     | intersect: -4510774879.70699
[2026-01-29 00:50:20] 2026-01-28 23:49:08,865 | INFO     | chi2: 3.9004959806370025
[2026-01-29 00:50:20] 2026-01-28 23:49:08,866 | INFO     | current chi2=3.9004959806370025 (change=56.439879612826616 %)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,866 | INFO     | sum of square deviations: 5576683165.5
[2026-01-29 00:50:20] 2026-01-28 23:49:08,868 | INFO     | sum of deviations: -57295047758.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,869 | INFO     | mean x: 1769636114.5
[2026-01-29 00:50:20] 2026-01-28 23:49:08,869 | INFO     | mean y: 2533139.9312977097
[2026-01-29 00:50:20] 2026-01-28 23:49:08,869 | INFO     | intersect: 18183839605.719803
[2026-01-29 00:50:20] 2026-01-28 23:49:08,869 | INFO     | chi2: 1.1645861857315134
[2026-01-29 00:50:20] 2026-01-28 23:49:08,870 | INFO     | current chi2=1.1645861857315134 (change=70.14261284942226 %)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,870 | INFO     | sum of square deviations: 5263458688.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,872 | INFO     | sum of deviations: -67899950583.99999
[2026-01-29 00:50:20] 2026-01-28 23:49:08,873 | INFO     | mean x: 1769636267.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,873 | INFO     | mean y: 2538269.5058365758
[2026-01-29 00:50:20] 2026-01-28 23:49:08,873 | INFO     | intersect: 22831294455.03443
[2026-01-29 00:50:20] 2026-01-28 23:49:08,873 | INFO     | chi2: 1.0547872610109645
[2026-01-29 00:50:20] 2026-01-28 23:49:08,873 | INFO     | current chi2=1.0547872610109645 (change=9.428149334570776 %)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,874 | INFO     | left removable region: 30
[2026-01-29 00:50:20] 2026-01-28 23:49:08,874 | INFO     | sum of square deviations: 4075741535.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,876 | INFO     | sum of deviations: -31675794215.0
[2026-01-29 00:50:20] 2026-01-28 23:49:08,888 | INFO     | mean x: 1769636541.5
[2026-01-29 00:50:20] 2026-01-28 23:49:08,888 | INFO     | mean y: 2537974.7881355933
[2026-01-29 00:50:20] 2026-01-28 23:49:08,888 | INFO     | intersect: 13755775868.441347
[2026-01-29 00:50:20] 2026-01-28 23:49:08,888 | INFO     | chi2: 0.18285386249193306
[2026-01-29 00:50:20] 2026-01-28 23:49:08,889 | INFO     | current memory leak: -7.77 B/s (using 236 data points, chi2=0.18)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,889 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-01-29 00:50:20] 2026-01-28 23:49:08,889 | INFO     | ..............................
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . Timing measurements:
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . get job = 0 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . initial setup = 124 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . payload setup = 154 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . stage-in = 0 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . payload execution = 16717 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . stage-out = 4 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | . log creation = 1 s
[2026-01-29 00:50:20] 2026-01-28 23:49:08,890 | INFO     | ..............................
[2026-01-29 00:50:20] 2026-01-28 23:49:09,064 | INFO     | 
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | job summary report
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | --------------------------------------------------
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | PanDA job id: 6985339707
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | task id: 48317911
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | errors: (none)
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-29 00:50:20] 2026-01-28 23:49:09,065 | INFO     | pilot state: finished 
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | transexitcode: 0
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | exeerrorcode: 0
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | exeerrordiag: 
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | exitcode: 0
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | exitmsg: OK
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | cpuconsumptiontime: 62773 s
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | nevents: 400
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | neventsw: 0
[2026-01-29 00:50:20] 2026-01-28 23:49:09,066 | INFO     | pid: 6723
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | pgrp: 6723
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | corecount: 8
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | event service: False
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | sizes: {0: 2283120, 1: 2284178, 2: 2284266, 16876: 2316083, 16880: 2325081, 16884: 2325137, 16885: 2325459}
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | --------------------------------------------------
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | 
[2026-01-29 00:50:20] 2026-01-28 23:49:09,067 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-29 00:50:20] 2026-01-28 23:49:09,614 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,614 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,614 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,616 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 00:50:20] 2026-01-28 23:49:09,617 | INFO     | job 6985339707 has completed (purged errors)
[2026-01-29 00:50:20] 2026-01-28 23:49:09,617 | INFO     | overall cleanup function is called
[2026-01-29 00:50:20] 2026-01-28 23:49:09,825 | INFO     | PID=2251 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-29 00:50:20] 2026-01-28 23:49:09,825 | INFO     | .. there are 2 such processes running
[2026-01-29 00:50:20] 2026-01-28 23:49:10,628 | INFO     | --- collectZombieJob: --- 10, [6723]
[2026-01-29 00:50:20] 2026-01-28 23:49:10,629 | INFO     | zombie collector waiting for pid 6723
[2026-01-29 00:50:20] 2026-01-28 23:49:10,629 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 00:50:20] 2026-01-28 23:49:10,629 | INFO     | collected zombie processes
[2026-01-29 00:50:20] 2026-01-28 23:49:10,629 | INFO     | will attempt to kill all subprocesses of pid=6723
[2026-01-29 00:50:20] 2026-01-28 23:49:10,707 | INFO     | process IDs to be killed: [6723] (in reverse order)
[2026-01-29 00:50:20] 2026-01-28 23:49:11,513 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 00:50:20] 2026-01-28 23:49:11,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 00:50:20] 2026-01-28 23:49:11,516 | INFO     | did not find any defunct processes belonging to 6723
[2026-01-29 00:50:20] 2026-01-28 23:49:11,517 | INFO     | did not find any defunct processes belonging to 6723
[2026-01-29 00:50:20] 2026-01-28 23:49:11,518 | INFO     | ready for new job
[2026-01-29 00:50:20] 2026-01-28 23:49:11,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 00:50:20] 2026-01-28 23:49:11,520 | INFO     | **************************************
[2026-01-29 00:50:20] 2026-01-28 23:49:11,520 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 00:50:20] 2026-01-28 23:49:11,520 | INFO     | **************************************
[2026-01-29 00:50:20] 2026-01-28 23:49:11,520 | INFO     | 
[2026-01-29 00:50:20] 2026-01-28 23:49:11,521 | INFO     | pilot is running in a VM
[2026-01-29 00:50:20] 2026-01-28 23:49:11,521 | INFO     | architecture information:
[2026-01-29 00:50:20] 2026-01-28 23:49:11,529 | INFO     | executing command: cat /etc/os-release
[2026-01-29 00:50:20] 2026-01-28 23:49:11,837 | INFO     | cat /etc/os-release:
[2026-01-29 00:50:20] NAME="CentOS Linux"
[2026-01-29 00:50:20] VERSION="7 (Core)"
[2026-01-29 00:50:20] ID="centos"
[2026-01-29 00:50:20] ID_LIKE="rhel fedora"
[2026-01-29 00:50:20] VERSION_ID="7"
[2026-01-29 00:50:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 00:50:20] ANSI_COLOR="0;31"
[2026-01-29 00:50:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 00:50:20] HOME_URL="https://www.centos.org/"
[2026-01-29 00:50:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 00:50:20] 
[2026-01-29 00:50:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 00:50:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 00:50:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 00:50:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 00:50:20] 
[2026-01-29 00:50:20] 2026-01-28 23:49:11,837 | INFO     | **************************************
[2026-01-29 00:50:20] 2026-01-28 23:49:12,341 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-29 00:50:20] 2026-01-28 23:49:12,601 | INFO     | sufficient remaining disk space (495512977408 B)
[2026-01-29 00:50:20] 2026-01-28 23:49:12,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 00:50:20] 2026-01-28 23:49:12,602 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 00:50:20] 2026-01-28 23:49:12,602 | INFO     | update_server=False
[2026-01-29 00:50:20] 2026-01-28 23:49:12,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 00:50:20] 2026-01-28 23:49:12,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 00:50:20] 2026-01-28 23:49:13,055 | INFO     | all data control threads have been joined
[2026-01-29 00:50:20] 2026-01-28 23:49:13,517 | INFO     | all payload control threads have been joined
[2026-01-29 00:50:20] 2026-01-28 23:49:13,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 00:50:20] 2026-01-28 23:49:13,539 | INFO     | aborting loop
[2026-01-29 00:50:20] 2026-01-28 23:49:13,608 | INFO     | [job] retrieve thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:13,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 00:50:20] 2026-01-28 23:49:13,722 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:13,791 | INFO     | [payload] validate_post thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:13,838 | INFO     | [payload] failed_post thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:13,899 | INFO     | all job control threads have been joined
[2026-01-29 00:50:20] 2026-01-28 23:49:13,901 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,061 | INFO     | [data] control thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 00:50:20] 2026-01-28 23:49:14,091 | INFO     | [job] validate thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,361 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,362 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,523 | INFO     | [payload] control thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,545 | INFO     | [job] job monitor thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,591 | INFO     | [data] copytool_in thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,609 | INFO     | [data] copytool_out thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:14,905 | INFO     | [job] control thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:15,084 | INFO     | [job] queue monitor thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:17,642 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 00:50:20] 2026-01-28 23:49:41,970 | INFO     | PID=2251 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-29 00:50:20] 2026-01-28 23:49:41,970 | INFO     | .. there are 2 such processes running
[2026-01-29 00:50:20] 2026-01-28 23:49:41,971 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 00:50:20] 2026-01-28 23:49:41,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 00:50:20] 2026-01-28 23:49:41,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 00:50:20] 2026-01-28 23:50:10,206 | INFO     | [monitor] cgroup control has ended
[2026-01-29 00:50:20] 2026-01-28 23:50:10,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140267320923968)>', '<ExcThread(monitor, started 140266577061632)>']
[2026-01-29 00:50:20] 2026-01-28 23:50:11,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 00:50:20] 2026-01-28 23:50:11,147 | INFO     | [monitor] control thread has ended
[2026-01-29 00:50:20] 2026-01-28 23:50:15,584 | INFO     | all workflow threads have been joined
[2026-01-29 00:50:20] 2026-01-28 23:50:15,585 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 00:50:20] 2026-01-28 23:50:15,585 | INFO     | traces error code: 0
[2026-01-29 00:50:20] 2026-01-28 23:50:15,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 00:50:20] 2026-01-28 23:50:15,946 [wrapper] ==== pilot stdout END ====
[2026-01-29 00:50:20] 2026-01-28 23:50:16,026 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 00:50:20] 2026-01-28 23:50:16,089 [wrapper] pilotpid: 2251
[2026-01-29 00:50:20] 2026-01-28 23:50:16,189 [wrapper] Pilot exit status: 0
[2026-01-29 00:50:20] 2026-01-28 23:50:16,534 [wrapper] pandaids: 6985339707
[2026-01-29 00:50:20] 2026-01-28 23:50:17,787 [wrapper] cleanup supervisor_pilot 12753 2252
[2026-01-29 00:50:20] 2026-01-28 23:50:17,848 [wrapper] Test setup, not cleaning
[2026-01-29 00:50:20] 2026-01-28 23:50:17,957 [wrapper] apfmon messages muted
[2026-01-29 00:50:20] 2026-01-28 23:50:18,101 [wrapper] ==== wrapper stdout END ====
[2026-01-29 00:50:20] 2026-01-28 23:50:18,254 [wrapper] ==== wrapper stderr END ====
[2026-01-29 00:50:20]  *** Error codes and diagnostics ***
[2026-01-29 00:50:20]     "exeErrorCode": 0,
[2026-01-29 00:50:20]     "exeErrorDiag": "",
[2026-01-29 00:50:20]     "pilotErrorCode": 0,
[2026-01-29 00:50:20]     "pilotErrorDiag": "",
[2026-01-29 00:50:20]  *** Listing of results directory ***
[2026-01-29 00:50:20] total 728896
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc    584422 Jan 28 13:23 pilot3.tar.gz
[2026-01-29 00:50:20] -rwx------. 1 boinc boinc     36322 Jan 28 13:24 runpilot2-wrapper.sh
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc      5111 Jan 28 13:28 queuedata.json
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc       100 Jan 28 20:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 00:50:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan 28 20:01 run_atlas
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc       105 Jan 28 20:01 job.xml
[2026-01-29 00:50:20] -rw-r--r--. 2 boinc boinc 533714017 Jan 28 20:01 EVNT.48317909._000091.pool.root.1
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc      6391 Jan 28 20:01 init_data.xml
[2026-01-29 00:50:20] -rw-r--r--. 2 boinc boinc     15845 Jan 28 20:01 start_atlas.sh
[2026-01-29 00:50:20] drwxrwx--x. 2 boinc boinc        68 Jan 28 20:01 shared
[2026-01-29 00:50:20] -rw-r--r--. 2 boinc boinc    597757 Jan 28 20:01 input.tar.gz
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc         0 Jan 28 20:01 boinc_lockfile
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc      2500 Jan 28 20:01 pandaJob.out
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc       415 Jan 28 20:07 workernode_map.json
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc   1005192 Jan 28 20:07 agis_schedconf.cvmfs.json
[2026-01-29 00:50:20] drwx------. 5 boinc boinc      4096 Jan 28 20:07 pilot3
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc 203047614 Jan 29 00:47 HITS.48317911._004528.pool.root.1
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc       532 Jan 29 00:48 boinc_task_state.xml
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc      1013 Jan 29 00:48 memory_monitor_summary.json
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc   1516246 Jan 29 00:49 agis_ddmendpoints.agis.ALL.json
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc    484822 Jan 29 00:49 log.48317911._004528.job.log.tgz.1
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc      6315 Jan 29 00:49 heartbeat.json
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc        95 Jan 29 00:49 pilot_heartbeat.json
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc      8192 Jan 29 00:50 boinc_mmap_file
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc        28 Jan 29 00:50 wrapper_checkpoint.txt
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc      4879 Jan 29 00:50 pilotlog.txt
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc   2364026 Jan 29 00:50 log.48317911._004528.job.log.1
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc       357 Jan 29 00:50 output.list
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc       620 Jan 29 00:50 runtime_log
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc   2867200 Jan 29 00:50 result.tar.gz
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc      8816 Jan 29 00:50 runtime_log.err
[2026-01-29 00:50:20] -rw-------. 1 boinc boinc       655 Jan 29 00:50 4ZyKDmrlJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmAqFKDmCiAC4n.diag
[2026-01-29 00:50:20] -rw-r--r--. 1 boinc boinc     20794 Jan 29 00:50 stderr.txt
[2026-01-29 00:50:21] HITS file was successfully produced:
[2026-01-29 00:50:21] -rw-------. 1 boinc boinc 203047614 Jan 29 00:47 shared/HITS.pool.root.1
[2026-01-29 00:50:21]  *** Contents of shared directory: ***
[2026-01-29 00:50:21] total 722900
[2026-01-29 00:50:21] -rw-r--r--. 2 boinc boinc 533714017 Jan 28 20:01 ATLAS.root_0
[2026-01-29 00:50:21] -rw-r--r--. 2 boinc boinc     15845 Jan 28 20:01 start_atlas.sh
[2026-01-29 00:50:21] -rw-r--r--. 2 boinc boinc    597757 Jan 28 20:01 input.tar.gz
[2026-01-29 00:50:21] -rw-------. 1 boinc boinc 203047614 Jan 29 00:47 HITS.pool.root.1
[2026-01-29 00:50:21] -rw-------. 1 boinc boinc   2867200 Jan 29 00:50 result.tar.gz
00:50:23 (30663): run_atlas exited; CPU time 62962.612366
00:50:23 (30663): called boinc_finish(0)

</stderr_txt>
]]>

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