Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:18:10 (3148309): wrapper (7.7.26015): starting
17:18:10 (3148309): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 17:18:10] Arguments: --nthreads 3
[2026-01-28 17:18:10] Threads: 3
[2026-01-28 17:18:10] Checking for CVMFS
[2026-01-28 17:18:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 17:18:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 17:18:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 17:18:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 17:18:11] 2.9.2.0 3133510 80 49232 155622 3 188 24128770 36864001 0 130560 0 39905 99.957 2917 16668 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 17:18:11] CVMFS is ok
[2026-01-28 17:18:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 17:18:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 17:18:11] Further information can be found at the LHC@home message board.
[2026-01-28 17:18:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 17:18:11] Checking for apptainer binary...
[2026-01-28 17:18:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 17:18:11] Running /usr/bin/apptainer --version
[2026-01-28 17:18:11] apptainer version 1.4.1-1.1
[2026-01-28 17:18:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 17:18:11] thA335b
[2026-01-28 17:18:11] apptainer works
[2026-01-28 17:18:11] Set ATHENA_PROC_NUMBER=3
[2026-01-28 17:18:11] Set ATHENA_CORE_NUMBER=3
[2026-01-28 17:18:11] Starting ATLAS job with PandaID=6985339729
[2026-01-28 17:18:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 18:48:34]  *** The last 200 lines of the pilot log: ***
[2026-01-28 18:48:34] 2026-01-28 17:47:27,494 | INFO     | --- collectZombieJob: --- 10, [3156775]
[2026-01-28 18:48:34] 2026-01-28 17:47:27,494 | INFO     | zombie collector waiting for pid 3156775
[2026-01-28 18:48:34] 2026-01-28 17:47:27,494 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 18:48:34] 2026-01-28 17:47:27,494 | INFO     | collected zombie processes
[2026-01-28 18:48:34] 2026-01-28 17:47:27,495 | INFO     | will attempt to kill all subprocesses of pid=3156775
[2026-01-28 18:48:34] 2026-01-28 17:47:27,536 | INFO     | process IDs to be killed: [3156775] (in reverse order)
[2026-01-28 18:48:34] 2026-01-28 17:47:27,561 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 18:48:34] 2026-01-28 17:47:27,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 18:48:34] 2026-01-28 17:47:27,562 | INFO     | did not find any defunct processes belonging to 3156775
[2026-01-28 18:48:34] 2026-01-28 17:47:27,563 | INFO     | did not find any defunct processes belonging to 3156775
[2026-01-28 18:48:34] 2026-01-28 17:47:27,563 | INFO     | ready for new job
[2026-01-28 18:48:34] 2026-01-28 17:47:27,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 18:48:34] 2026-01-28 17:47:27,564 | INFO     | **************************************
[2026-01-28 18:48:34] 2026-01-28 17:47:27,564 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 18:48:34] 2026-01-28 17:47:27,564 | INFO     | **************************************
[2026-01-28 18:48:34] 2026-01-28 17:47:27,564 | INFO     | 
[2026-01-28 18:48:34] 2026-01-28 17:47:27,564 | INFO     | architecture information:
[2026-01-28 18:48:34] 2026-01-28 17:47:27,565 | INFO     | executing command: cat /etc/os-release
[2026-01-28 18:48:34] 2026-01-28 17:47:27,574 | INFO     | cat /etc/os-release:
[2026-01-28 18:48:34] NAME="CentOS Linux"
[2026-01-28 18:48:34] VERSION="7 (Core)"
[2026-01-28 18:48:34] ID="centos"
[2026-01-28 18:48:34] ID_LIKE="rhel fedora"
[2026-01-28 18:48:34] VERSION_ID="7"
[2026-01-28 18:48:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 18:48:34] ANSI_COLOR="0;31"
[2026-01-28 18:48:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 18:48:34] HOME_URL="https://www.centos.org/"
[2026-01-28 18:48:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 18:48:34] 
[2026-01-28 18:48:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 18:48:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 18:48:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 18:48:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 18:48:34] 
[2026-01-28 18:48:34] 2026-01-28 17:47:27,574 | INFO     | **************************************
[2026-01-28 18:48:34] 2026-01-28 17:47:28,078 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | INFO     | sufficient remaining disk space (380808200192 B)
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | INFO     | update_server=False
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 18:48:34] 2026-01-28 17:47:28,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:48:34] 2026-01-28 17:47:28,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:48:34] 2026-01-28 17:47:28,444 | INFO     | aborting loop
[2026-01-28 18:48:34] 2026-01-28 17:47:28,501 | INFO     | all job control threads have been joined
[2026-01-28 18:48:34] 2026-01-28 17:47:28,595 | INFO     | all data control threads have been joined
[2026-01-28 18:48:34] 2026-01-28 17:47:29,097 | INFO     | [job] retrieve thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:29,097 | INFO     | [job] queue monitor thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:29,450 | INFO     | [job] job monitor thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:29,454 | INFO     | all payload control threads have been joined
[2026-01-28 18:48:34] 2026-01-28 17:47:29,504 | INFO     | [job] control thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:29,601 | INFO     | [data] control thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:29,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 18:48:34] 2026-01-28 17:47:29,820 | INFO     | [payload] failed_post thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:29,885 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,095 | INFO     | [data] copytool_out thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,147 | INFO     | [job] validate thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,191 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,272 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,371 | INFO     | [data] copytool_in thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,417 | INFO     | [payload] validate_post thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:30,459 | INFO     | [payload] control thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:33,780 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:38,887 | INFO     | job.realtimelogging is not enabled
[2026-01-28 18:48:34] 2026-01-28 17:47:39,893 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 18:48:34] 2026-01-28 17:47:59,102 | INFO     | PID=3152348 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 18:48:34] 2026-01-28 17:47:59,103 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 18:48:34] 2026-01-28 17:47:59,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 18:48:34] 2026-01-28 17:47:59,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 18:48:34] 2026-01-28 17:48:17,366 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-28 18:48:34] 2026-01-28 17:48:27,371 | INFO     | [monitor] cgroup control has ended
[2026-01-28 18:48:34] 2026-01-28 17:48:29,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059037960000)>', '<ExcThread(monitor, started 140058254362368)>']
[2026-01-28 18:48:34] 2026-01-28 17:48:29,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 18:48:34] 2026-01-28 17:48:29,258 | INFO     | [monitor] control thread has ended
[2026-01-28 18:48:34] 2026-01-28 17:48:34,091 | INFO     | all workflow threads have been joined
[2026-01-28 18:48:34] 2026-01-28 17:48:34,091 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 18:48:34] 2026-01-28 17:48:34,092 | INFO     | traces error code: 0
[2026-01-28 18:48:34] 2026-01-28 17:48:34,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 18:48:34] 2026-01-28 17:48:34,140 [wrapper] ==== pilot stdout END ====
[2026-01-28 18:48:34] 2026-01-28 17:48:34,142 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 18:48:34] 2026-01-28 17:48:34,145 [wrapper] pilotpid: 3152348
[2026-01-28 18:48:34] 2026-01-28 17:48:34,147 [wrapper] Pilot exit status: 0
[2026-01-28 18:48:34] 2026-01-28 17:48:34,155 [wrapper] pandaids: 6985339729
[2026-01-28 18:48:34] 2026-01-28 17:48:34,173 [wrapper] cleanup supervisor_pilot 3162430 3152349
[2026-01-28 18:48:34] 2026-01-28 17:48:34,175 [wrapper] Test setup, not cleaning
[2026-01-28 18:48:34] 2026-01-28 17:48:34,178 [wrapper] apfmon messages muted
[2026-01-28 18:48:34] 2026-01-28 17:48:34,180 [wrapper] ==== wrapper stdout END ====
[2026-01-28 18:48:34] 2026-01-28 17:48:34,183 [wrapper] ==== wrapper stderr END ====
[2026-01-28 18:48:34]  *** Error codes and diagnostics ***
[2026-01-28 18:48:34]     "exeErrorCode": 0,
[2026-01-28 18:48:34]     "exeErrorDiag": "",
[2026-01-28 18:48:34]     "pilotErrorCode": 0,
[2026-01-28 18:48:34]     "pilotErrorDiag": "",
[2026-01-28 18:48:34]  *** Listing of results directory ***
[2026-01-28 18:48:34] total 723296
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:23 pilot3.tar.gz
[2026-01-28 18:48:34] -rwx------ 1 boinc boinc     36322 Jan 28 13:24 runpilot2-wrapper.sh
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:28 queuedata.json
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc       100 Jan 28 17:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 18:48:34] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 17:18 run_atlas
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc       105 Jan 28 17:18 job.xml
[2026-01-28 18:48:34] -rw-r--r-- 2 boinc boinc 533714017 Jan 28 17:18 EVNT.48317909._000091.pool.root.1
[2026-01-28 18:48:34] -rw-r--r-- 2 boinc boinc    597760 Jan 28 17:18 input.tar.gz
[2026-01-28 18:48:34] -rw-r--r-- 2 boinc boinc     15845 Jan 28 17:18 start_atlas.sh
[2026-01-28 18:48:34] drwxrwx--x 2 boinc boinc      4096 Jan 28 17:18 shared
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc         0 Jan 28 17:18 boinc_setup_complete
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc      6445 Jan 28 17:18 init_data.xml
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc         0 Jan 28 17:18 boinc_lockfile
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc      2501 Jan 28 17:18 pandaJob.out
[2026-01-28 18:48:34] -rw------- 1 boinc boinc   1005192 Jan 28 17:18 agis_schedconf.cvmfs.json
[2026-01-28 18:48:34] -rw------- 1 boinc boinc   1516246 Jan 28 17:18 agis_ddmendpoints.agis.ALL.json
[2026-01-28 18:48:34] -rw------- 1 boinc boinc       416 Jan 28 17:18 workernode_map.json
[2026-01-28 18:48:34] drwx------ 5 boinc boinc      4096 Jan 28 17:18 pilot3
[2026-01-28 18:48:34] -rw------- 1 boinc boinc 200916604 Jan 28 18:47 HITS.48317911._004550.pool.root.1
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc       530 Jan 28 18:47 boinc_task_state.xml
[2026-01-28 18:48:34] -rw------- 1 boinc boinc      1015 Jan 28 18:47 memory_monitor_summary.json
[2026-01-28 18:48:34] -rw------- 1 boinc boinc    273250 Jan 28 18:47 log.48317911._004550.job.log.tgz.1
[2026-01-28 18:48:34] -rw------- 1 boinc boinc      6282 Jan 28 18:47 heartbeat.json
[2026-01-28 18:48:34] -rw------- 1 boinc boinc        95 Jan 28 18:47 pilot_heartbeat.json
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc      8192 Jan 28 18:48 boinc_mmap_file
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc        27 Jan 28 18:48 wrapper_checkpoint.txt
[2026-01-28 18:48:34] -rw------- 1 boinc boinc      4820 Jan 28 18:48 pilotlog.txt
[2026-01-28 18:48:34] -rw------- 1 boinc boinc    778117 Jan 28 18:48 log.48317911._004550.job.log.1
[2026-01-28 18:48:34] -rw------- 1 boinc boinc       357 Jan 28 18:48 output.list
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc       620 Jan 28 18:48 runtime_log
[2026-01-28 18:48:34] -rw------- 1 boinc boinc   1064960 Jan 28 18:48 result.tar.gz
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc      8901 Jan 28 18:48 runtime_log.err
[2026-01-28 18:48:34] -rw------- 1 boinc boinc       658 Jan 28 18:48 kMTLDmrlJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmWqFKDmpFxMjn.diag
[2026-01-28 18:48:34] -rw-r--r-- 1 boinc boinc     10801 Jan 28 18:48 stderr.txt
[2026-01-28 18:48:34] HITS file was successfully produced:
[2026-01-28 18:48:34] -rw------- 1 boinc boinc 200916604 Jan 28 18:47 shared/HITS.pool.root.1
[2026-01-28 18:48:34]  *** Contents of shared directory: ***
[2026-01-28 18:48:34] total 719064
[2026-01-28 18:48:34] -rw-r--r-- 2 boinc boinc 533714017 Jan 28 17:18 ATLAS.root_0
[2026-01-28 18:48:34] -rw-r--r-- 2 boinc boinc    597760 Jan 28 17:18 input.tar.gz
[2026-01-28 18:48:34] -rw-r--r-- 2 boinc boinc     15845 Jan 28 17:18 start_atlas.sh
[2026-01-28 18:48:34] -rw------- 1 boinc boinc 200916604 Jan 28 18:47 HITS.pool.root.1
[2026-01-28 18:48:34] -rw------- 1 boinc boinc   1064960 Jan 28 18:48 result.tar.gz
18:48:36 (3148309): run_atlas exited; CPU time 15404.245852
18:48:36 (3148309): called boinc_finish(0)

</stderr_txt>
]]>

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