Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:31:51 (138297): wrapper (7.7.26015): starting
15:31:51 (138297): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 15:31:51] Arguments: --nthreads 3
[2026-01-28 15:31:51] Threads: 3
[2026-01-28 15:31:51] Checking for CVMFS
[2026-01-28 15:31:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 15:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 15:31:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 15:31:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 15:31:53] 2.9.2.0 138496 0 29624 155622 3 1 17925665 36864001 0 130560 0 0 0.000 1336 19362 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 15:31:53] CVMFS is ok
[2026-01-28 15:31:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 15:31:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 15:31:53] Further information can be found at the LHC@home message board.
[2026-01-28 15:31:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 15:31:53] Checking for apptainer binary...
[2026-01-28 15:31:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 15:31:53] Running /usr/bin/apptainer --version
[2026-01-28 15:31:53] apptainer version 1.4.1-1.1
[2026-01-28 15:31:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 15:31:53] atlasA221b
[2026-01-28 15:31:53] apptainer works
[2026-01-28 15:31:53] Set ATHENA_PROC_NUMBER=3
[2026-01-28 15:31:53] Set ATHENA_CORE_NUMBER=3
[2026-01-28 15:31:53] Starting ATLAS job with PandaID=6984881973
[2026-01-28 15:31:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 17:18:22]  *** The last 200 lines of the pilot log: ***
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,551 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 17:18:22] 2026-01-28 16:17:49,552 | INFO     | job 6984881973 has completed (purged errors)
[2026-01-28 17:18:22] 2026-01-28 16:17:49,552 | INFO     | overall cleanup function is called
[2026-01-28 17:18:22] 2026-01-28 16:17:50,558 | INFO     | --- collectZombieJob: --- 10, [147061]
[2026-01-28 17:18:22] 2026-01-28 16:17:50,558 | INFO     | zombie collector waiting for pid 147061
[2026-01-28 17:18:22] 2026-01-28 16:17:50,558 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 17:18:22] 2026-01-28 16:17:50,559 | INFO     | collected zombie processes
[2026-01-28 17:18:22] 2026-01-28 16:17:50,559 | INFO     | will attempt to kill all subprocesses of pid=147061
[2026-01-28 17:18:22] 2026-01-28 16:17:50,615 | INFO     | process IDs to be killed: [147061] (in reverse order)
[2026-01-28 17:18:22] 2026-01-28 16:17:50,646 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 17:18:22] 2026-01-28 16:17:50,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 17:18:22] 2026-01-28 16:17:50,648 | INFO     | did not find any defunct processes belonging to 147061
[2026-01-28 17:18:22] 2026-01-28 16:17:50,649 | INFO     | did not find any defunct processes belonging to 147061
[2026-01-28 17:18:22] 2026-01-28 16:17:50,650 | INFO     | ready for new job
[2026-01-28 17:18:22] 2026-01-28 16:17:50,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 17:18:22] 2026-01-28 16:17:50,650 | INFO     | **************************************
[2026-01-28 17:18:22] 2026-01-28 16:17:50,650 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 17:18:22] 2026-01-28 16:17:50,650 | INFO     | **************************************
[2026-01-28 17:18:22] 2026-01-28 16:17:50,650 | INFO     | 
[2026-01-28 17:18:22] 2026-01-28 16:17:50,651 | INFO     | architecture information:
[2026-01-28 17:18:22] 2026-01-28 16:17:50,651 | INFO     | executing command: cat /etc/os-release
[2026-01-28 17:18:22] 2026-01-28 16:17:50,660 | INFO     | cat /etc/os-release:
[2026-01-28 17:18:22] NAME="CentOS Linux"
[2026-01-28 17:18:22] VERSION="7 (Core)"
[2026-01-28 17:18:22] ID="centos"
[2026-01-28 17:18:22] ID_LIKE="rhel fedora"
[2026-01-28 17:18:22] VERSION_ID="7"
[2026-01-28 17:18:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 17:18:22] ANSI_COLOR="0;31"
[2026-01-28 17:18:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 17:18:22] HOME_URL="https://www.centos.org/"
[2026-01-28 17:18:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 17:18:22] 
[2026-01-28 17:18:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 17:18:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 17:18:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 17:18:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 17:18:22] 
[2026-01-28 17:18:22] 2026-01-28 16:17:50,661 | INFO     | **************************************
[2026-01-28 17:18:22] 2026-01-28 16:17:51,163 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 17:18:22] 2026-01-28 16:17:51,174 | INFO     | sufficient remaining disk space (342761668608 B)
[2026-01-28 17:18:22] 2026-01-28 16:17:51,174 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 17:18:22] 2026-01-28 16:17:51,174 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 17:18:22] 2026-01-28 16:17:51,174 | INFO     | update_server=False
[2026-01-28 17:18:22] 2026-01-28 16:17:51,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 17:18:22] 2026-01-28 16:17:51,174 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 17:18:22] 2026-01-28 16:17:51,261 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 17:18:22] 2026-01-28 16:17:51,261 | INFO     | aborting loop
[2026-01-28 17:18:22] 2026-01-28 16:17:51,395 | INFO     | all job control threads have been joined
[2026-01-28 17:18:22] 2026-01-28 16:17:51,553 | INFO     | job.realtimelogging is not enabled
[2026-01-28 17:18:22] 2026-01-28 16:17:51,856 | INFO     | all payload control threads have been joined
[2026-01-28 17:18:22] 2026-01-28 16:17:52,133 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 17:18:22] 2026-01-28 16:17:52,180 | INFO     | [job] retrieve thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,181 | INFO     | [job] queue monitor thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,181 | INFO     | all data control threads have been joined
[2026-01-28 17:18:22] 2026-01-28 16:17:52,234 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,253 | INFO     | [data] copytool_in thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,266 | INFO     | [job] job monitor thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,400 | INFO     | [job] control thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,452 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,558 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,861 | INFO     | [payload] control thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:52,877 | INFO     | [payload] validate_post thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:53,187 | INFO     | [data] control thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:53,386 | INFO     | [payload] failed_post thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:53,544 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:53,548 | INFO     | [job] validate thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:54,139 | INFO     | [data] copytool_out thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:17:54,460 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 17:18:22] 2026-01-28 16:17:58,466 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 17:18:22] 2026-01-28 16:18:15,752 | INFO     | [monitor] cgroup control has ended
[2026-01-28 17:18:22] 2026-01-28 16:18:16,863 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139785007634240)>', '<ExcThread(monitor, started 139784064329472)>']
[2026-01-28 17:18:22] 2026-01-28 16:18:21,232 | INFO     | PID=142595 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-28 17:18:22] 2026-01-28 16:18:21,232 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 17:18:22] 2026-01-28 16:18:21,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 17:18:22] 2026-01-28 16:18:21,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 17:18:22] 2026-01-28 16:18:21,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 17:18:22] 2026-01-28 16:18:21,232 | INFO     | [monitor] control thread has ended
[2026-01-28 17:18:22] 2026-01-28 16:18:21,881 | INFO     | all workflow threads have been joined
[2026-01-28 17:18:22] 2026-01-28 16:18:21,881 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 17:18:22] 2026-01-28 16:18:21,881 | INFO     | traces error code: 0
[2026-01-28 17:18:22] 2026-01-28 16:18:21,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 17:18:22] 2026-01-28 16:18:21,933 [wrapper] ==== pilot stdout END ====
[2026-01-28 17:18:22] 2026-01-28 16:18:21,935 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 17:18:22] 2026-01-28 16:18:21,938 [wrapper] pilotpid: 142595
[2026-01-28 17:18:22] 2026-01-28 16:18:21,940 [wrapper] Pilot exit status: 0
[2026-01-28 17:18:22] 2026-01-28 16:18:21,947 [wrapper] pandaids: 6984881973
[2026-01-28 17:18:22] 2026-01-28 16:18:21,967 [wrapper] cleanup supervisor_pilot  163669 142596
[2026-01-28 17:18:22] 2026-01-28 16:18:21,970 [wrapper] Test setup, not cleaning
[2026-01-28 17:18:22] 2026-01-28 16:18:21,972 [wrapper] apfmon messages muted
[2026-01-28 17:18:22] 2026-01-28 16:18:21,975 [wrapper] ==== wrapper stdout END ====
[2026-01-28 17:18:22] 2026-01-28 16:18:21,977 [wrapper] ==== wrapper stderr END ====
[2026-01-28 17:18:22]  *** Error codes and diagnostics ***
[2026-01-28 17:18:22]     "exeErrorCode": 0,
[2026-01-28 17:18:22]     "exeErrorDiag": "",
[2026-01-28 17:18:22]     "pilotErrorCode": 0,
[2026-01-28 17:18:22]     "pilotErrorDiag": "",
[2026-01-28 17:18:22]  *** Listing of results directory ***
[2026-01-28 17:18:22] total 729456
[2026-01-28 17:18:22] -rwx------ 1 boinc boinc     36322 Jan 28 13:23 runpilot2-wrapper.sh
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:23 pilot3.tar.gz
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:26 queuedata.json
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc       100 Jan 28 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 17:18:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 15:31 run_atlas
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc       105 Jan 28 15:31 job.xml
[2026-01-28 17:18:22] -rw-r--r-- 2 boinc boinc 540797193 Jan 28 15:31 EVNT.48317969._000026.pool.root.1
[2026-01-28 17:18:22] -rw-r--r-- 2 boinc boinc    597765 Jan 28 15:31 input.tar.gz
[2026-01-28 17:18:22] -rw-r--r-- 2 boinc boinc     15845 Jan 28 15:31 start_atlas.sh
[2026-01-28 17:18:22] drwxrwx--x 2 boinc boinc      4096 Jan 28 15:31 shared
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc         0 Jan 28 15:31 boinc_setup_complete
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc      6199 Jan 28 15:31 init_data.xml
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc         0 Jan 28 15:31 boinc_lockfile
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc      2512 Jan 28 15:31 pandaJob.out
[2026-01-28 17:18:22] -rw------- 1 boinc boinc   1005192 Jan 28 15:32 agis_schedconf.cvmfs.json
[2026-01-28 17:18:22] -rw------- 1 boinc boinc   1516246 Jan 28 15:32 agis_ddmendpoints.agis.ALL.json
[2026-01-28 17:18:22] -rw------- 1 boinc boinc       430 Jan 28 15:32 workernode_map.json
[2026-01-28 17:18:22] drwx------ 5 boinc boinc      4096 Jan 28 15:32 pilot3
[2026-01-28 17:18:22] -rw------- 1 boinc boinc 199851726 Jan 28 17:17 HITS.48317971._002029.pool.root.1
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc       530 Jan 28 17:17 boinc_task_state.xml
[2026-01-28 17:18:22] -rw------- 1 boinc boinc        95 Jan 28 17:17 pilot_heartbeat.json
[2026-01-28 17:18:22] -rw------- 1 boinc boinc      1030 Jan 28 17:17 memory_monitor_summary.json
[2026-01-28 17:18:22] -rw------- 1 boinc boinc    279289 Jan 28 17:17 log.48317971._002029.job.log.tgz.1
[2026-01-28 17:18:22] -rw------- 1 boinc boinc      6320 Jan 28 17:17 heartbeat.json
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc        27 Jan 28 17:18 wrapper_checkpoint.txt
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc      8192 Jan 28 17:18 boinc_mmap_file
[2026-01-28 17:18:22] -rw------- 1 boinc boinc      4819 Jan 28 17:18 pilotlog.txt
[2026-01-28 17:18:22] -rw------- 1 boinc boinc    916360 Jan 28 17:18 log.48317971._002029.job.log.1
[2026-01-28 17:18:22] -rw------- 1 boinc boinc       357 Jan 28 17:18 output.list
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc       620 Jan 28 17:18 runtime_log
[2026-01-28 17:18:22] -rw------- 1 boinc boinc   1208320 Jan 28 17:18 result.tar.gz
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc      8916 Jan 28 17:18 runtime_log.err
[2026-01-28 17:18:22] -rw------- 1 boinc boinc       661 Jan 28 17:18 MV3MDmIlJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmZoFKDmDFIPPm.diag
[2026-01-28 17:18:22] -rw-r--r-- 1 boinc boinc     12106 Jan 28 17:18 stderr.txt
[2026-01-28 17:18:22] HITS file was successfully produced:
[2026-01-28 17:18:22] -rw------- 1 boinc boinc 199851726 Jan 28 17:17 shared/HITS.pool.root.1
[2026-01-28 17:18:22]  *** Contents of shared directory: ***
[2026-01-28 17:18:22] total 725080
[2026-01-28 17:18:22] -rw-r--r-- 2 boinc boinc 540797193 Jan 28 15:31 ATLAS.root_0
[2026-01-28 17:18:22] -rw-r--r-- 2 boinc boinc    597765 Jan 28 15:31 input.tar.gz
[2026-01-28 17:18:22] -rw-r--r-- 2 boinc boinc     15845 Jan 28 15:31 start_atlas.sh
[2026-01-28 17:18:22] -rw------- 1 boinc boinc 199851726 Jan 28 17:17 HITS.pool.root.1
[2026-01-28 17:18:22] -rw------- 1 boinc boinc   1208320 Jan 28 17:18 result.tar.gz
17:18:23 (138297): run_atlas exited; CPU time 18215.295670
17:18:23 (138297): called boinc_finish(0)

</stderr_txt>
]]>

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