Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:47:01 (4073483): wrapper (7.7.26015): starting
17:47:01 (4073483): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 17:47:01] Arguments: --nthreads 3
[2026-01-28 17:47:01] Threads: 3
[2026-01-28 17:47:01] Checking for CVMFS
[2026-01-28 17:47:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 17:47:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 17:47:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 17:47:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 17:47:01] 2.9.2.0 4027610 269 52252 155622 3 188 24387300 36864000 0 130560 0 120155 99.987 2913 15412 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 17:47:01] CVMFS is ok
[2026-01-28 17:47:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 17:47:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 17:47:01] Further information can be found at the LHC@home message board.
[2026-01-28 17:47:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 17:47:01] Checking for apptainer binary...
[2026-01-28 17:47:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 17:47:01] Running /usr/bin/apptainer --version
[2026-01-28 17:47:01] apptainer version 1.4.1-1.1
[2026-01-28 17:47:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 17:47:02] magicA246a
[2026-01-28 17:47:02] apptainer works
[2026-01-28 17:47:02] Set ATHENA_PROC_NUMBER=3
[2026-01-28 17:47:02] Set ATHENA_CORE_NUMBER=3
[2026-01-28 17:47:02] Starting ATLAS job with PandaID=6985074058
[2026-01-28 17:47:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 19:08:39]  *** The last 200 lines of the pilot log: ***
[2026-01-28 19:08:39] 2026-01-28 18:08:08,965 | INFO     | process IDs to be killed: [4081946] (in reverse order)
[2026-01-28 19:08:39] 2026-01-28 18:08:08,995 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 19:08:39] 2026-01-28 18:08:08,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 19:08:39] 2026-01-28 18:08:08,997 | INFO     | did not find any defunct processes belonging to 4081946
[2026-01-28 19:08:39] 2026-01-28 18:08:08,998 | INFO     | did not find any defunct processes belonging to 4081946
[2026-01-28 19:08:39] 2026-01-28 18:08:08,998 | INFO     | ready for new job
[2026-01-28 19:08:39] 2026-01-28 18:08:08,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 19:08:39] 2026-01-28 18:08:08,999 | INFO     | **************************************
[2026-01-28 19:08:39] 2026-01-28 18:08:08,999 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 19:08:39] 2026-01-28 18:08:08,999 | INFO     | **************************************
[2026-01-28 19:08:39] 2026-01-28 18:08:08,999 | INFO     | 
[2026-01-28 19:08:39] 2026-01-28 18:08:09,000 | INFO     | architecture information:
[2026-01-28 19:08:39] 2026-01-28 18:08:09,000 | INFO     | executing command: cat /etc/os-release
[2026-01-28 19:08:39] 2026-01-28 18:08:09,009 | INFO     | cat /etc/os-release:
[2026-01-28 19:08:39] NAME="CentOS Linux"
[2026-01-28 19:08:39] VERSION="7 (Core)"
[2026-01-28 19:08:39] ID="centos"
[2026-01-28 19:08:39] ID_LIKE="rhel fedora"
[2026-01-28 19:08:39] VERSION_ID="7"
[2026-01-28 19:08:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 19:08:39] ANSI_COLOR="0;31"
[2026-01-28 19:08:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 19:08:39] HOME_URL="https://www.centos.org/"
[2026-01-28 19:08:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 19:08:39] 
[2026-01-28 19:08:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 19:08:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 19:08:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 19:08:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 19:08:39] 
[2026-01-28 19:08:39] 2026-01-28 18:08:09,009 | INFO     | **************************************
[2026-01-28 19:08:39] 2026-01-28 18:08:09,512 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 19:08:39] 2026-01-28 18:08:09,523 | INFO     | sufficient remaining disk space (279319674880 B)
[2026-01-28 19:08:39] 2026-01-28 18:08:09,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 19:08:39] 2026-01-28 18:08:09,524 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 19:08:39] 2026-01-28 18:08:09,524 | INFO     | update_server=False
[2026-01-28 19:08:39] 2026-01-28 18:08:09,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 19:08:39] 2026-01-28 18:08:09,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 19:08:39] 2026-01-28 18:08:09,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 19:08:39] 2026-01-28 18:08:09,640 | INFO     | all job control threads have been joined
[2026-01-28 19:08:39] 2026-01-28 18:08:09,703 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 19:08:39] 2026-01-28 18:08:09,703 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 19:08:39] 2026-01-28 18:08:09,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 19:08:39] 2026-01-28 18:08:09,704 | INFO     | will abort loop
[2026-01-28 19:08:39] 2026-01-28 18:08:09,727 | INFO     | all data control threads have been joined
[2026-01-28 19:08:39] 2026-01-28 18:08:10,528 | INFO     | [job] queue monitor thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,529 | INFO     | [job] retrieve thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,645 | INFO     | [job] control thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,647 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,709 | INFO     | [job] job monitor thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,731 | INFO     | [data] control thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,815 | INFO     | all payload control threads have been joined
[2026-01-28 19:08:39] 2026-01-28 18:08:10,833 | INFO     | [payload] failed_post thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:10,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 19:08:39] 2026-01-28 18:08:11,148 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:11,372 | INFO     | [payload] validate_post thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:11,746 | INFO     | [job] validate thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:11,821 | INFO     | [payload] control thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:11,839 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:11,904 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:11,955 | INFO     | [data] copytool_in thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:12,964 | INFO     | [data] copytool_out thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:13,530 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 19:08:39] 2026-01-28 18:08:16,742 | INFO     | [monitor] cgroup control has ended
[2026-01-28 19:08:39] 2026-01-28 18:08:18,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890796283712)>', '<ExcThread(monitor, started 139890012440320)>']
[2026-01-28 19:08:39] 2026-01-28 18:08:23,480 | INFO     | all workflow threads have been joined
[2026-01-28 19:08:39] 2026-01-28 18:08:23,481 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 19:08:39] 2026-01-28 18:08:23,481 | INFO     | traces error code: 0
[2026-01-28 19:08:39] 2026-01-28 18:08:23,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 19:08:39] 2026-01-28 18:08:39,254 | INFO     | PID=4077520 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 19:08:39] 2026-01-28 18:08:39,254 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 19:08:39] 2026-01-28 18:08:39,254 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 19:08:39] 2026-01-28 18:08:39,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 19:08:39] 2026-01-28 18:08:39,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 19:08:39] 2026-01-28 18:08:39,254 | INFO     | [monitor] control thread has ended
[2026-01-28 19:08:39] 2026-01-28 18:08:39,303 [wrapper] ==== pilot stdout END ====
[2026-01-28 19:08:39] 2026-01-28 18:08:39,305 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 19:08:39] 2026-01-28 18:08:39,307 [wrapper] pilotpid: 4077520
[2026-01-28 19:08:39] 2026-01-28 18:08:39,310 [wrapper] Pilot exit status: 0
[2026-01-28 19:08:39] 2026-01-28 18:08:39,317 [wrapper] pandaids: 6985074058
[2026-01-28 19:08:39] 2026-01-28 18:08:39,337 [wrapper] cleanup supervisor_pilot 4088169 4077521
[2026-01-28 19:08:39] 2026-01-28 18:08:39,339 [wrapper] Test setup, not cleaning
[2026-01-28 19:08:39] 2026-01-28 18:08:39,341 [wrapper] apfmon messages muted
[2026-01-28 19:08:39] 2026-01-28 18:08:39,344 [wrapper] ==== wrapper stdout END ====
[2026-01-28 19:08:39] 2026-01-28 18:08:39,346 [wrapper] ==== wrapper stderr END ====
[2026-01-28 19:08:39]  *** Error codes and diagnostics ***
[2026-01-28 19:08:39]     "exeErrorCode": 0,
[2026-01-28 19:08:39]     "exeErrorDiag": "",
[2026-01-28 19:08:39]     "pilotErrorCode": 0,
[2026-01-28 19:08:39]     "pilotErrorDiag": "",
[2026-01-28 19:08:39]  *** Listing of results directory ***
[2026-01-28 19:08:39] total 665564
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:08 pilot3.tar.gz
[2026-01-28 19:08:39] -rwx------ 1 boinc boinc     36322 Jan 28 13:21 runpilot2-wrapper.sh
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:23 queuedata.json
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc       100 Jan 28 17:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 19:08:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 17:47 run_atlas
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc       105 Jan 28 17:47 job.xml
[2026-01-28 19:08:39] -rw-r--r-- 2 boinc boinc 494063945 Jan 28 17:47 EVNT.48317869._000093.pool.root.1
[2026-01-28 19:08:39] drwxrwx--x 2 boinc boinc      4096 Jan 28 17:47 shared
[2026-01-28 19:08:39] -rw-r--r-- 2 boinc boinc    597758 Jan 28 17:47 input.tar.gz
[2026-01-28 19:08:39] -rw-r--r-- 2 boinc boinc     15845 Jan 28 17:47 start_atlas.sh
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc         0 Jan 28 17:47 boinc_setup_complete
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc      6447 Jan 28 17:47 init_data.xml
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc         0 Jan 28 17:47 boinc_lockfile
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc      2514 Jan 28 17:47 pandaJob.out
[2026-01-28 19:08:39] -rw------- 1 boinc boinc   1005192 Jan 28 17:47 agis_schedconf.cvmfs.json
[2026-01-28 19:08:39] -rw------- 1 boinc boinc   1516246 Jan 28 17:47 agis_ddmendpoints.agis.ALL.json
[2026-01-28 19:08:39] -rw------- 1 boinc boinc       427 Jan 28 17:47 workernode_map.json
[2026-01-28 19:08:39] drwx------ 5 boinc boinc      4096 Jan 28 17:47 pilot3
[2026-01-28 19:08:39] -rw------- 1 boinc boinc 181594573 Jan 28 19:07 HITS.48317872._004639.pool.root.1
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc       530 Jan 28 19:07 boinc_task_state.xml
[2026-01-28 19:08:39] -rw------- 1 boinc boinc      1018 Jan 28 19:08 memory_monitor_summary.json
[2026-01-28 19:08:39] -rw------- 1 boinc boinc    258455 Jan 28 19:08 log.48317872._004639.job.log.tgz.1
[2026-01-28 19:08:39] -rw------- 1 boinc boinc      6302 Jan 28 19:08 heartbeat.json
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc      8192 Jan 28 19:08 boinc_mmap_file
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc        27 Jan 28 19:08 wrapper_checkpoint.txt
[2026-01-28 19:08:39] -rw------- 1 boinc boinc       747 Jan 28 19:08 pilotlog.txt
[2026-01-28 19:08:39] -rw------- 1 boinc boinc        95 Jan 28 19:08 pilot_heartbeat.json
[2026-01-28 19:08:39] -rw------- 1 boinc boinc    712911 Jan 28 19:08 log.48317872._004639.job.log.1
[2026-01-28 19:08:39] -rw------- 1 boinc boinc       357 Jan 28 19:08 output.list
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc       620 Jan 28 19:08 runtime_log
[2026-01-28 19:08:39] -rw------- 1 boinc boinc    993280 Jan 28 19:08 result.tar.gz
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc      8916 Jan 28 19:08 runtime_log.err
[2026-01-28 19:08:39] -rw------- 1 boinc boinc       661 Jan 28 19:08 lEtNDm8iJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmNhFKDmlPsghm.diag
[2026-01-28 19:08:39] -rw-r--r-- 1 boinc boinc     10312 Jan 28 19:08 stderr.txt
[2026-01-28 19:08:39] HITS file was successfully produced:
[2026-01-28 19:08:39] -rw------- 1 boinc boinc 181594573 Jan 28 19:07 shared/HITS.pool.root.1
[2026-01-28 19:08:39]  *** Contents of shared directory: ***
[2026-01-28 19:08:39] total 661408
[2026-01-28 19:08:39] -rw-r--r-- 2 boinc boinc 494063945 Jan 28 17:47 ATLAS.root_0
[2026-01-28 19:08:39] -rw-r--r-- 2 boinc boinc    597758 Jan 28 17:47 input.tar.gz
[2026-01-28 19:08:39] -rw-r--r-- 2 boinc boinc     15845 Jan 28 17:47 start_atlas.sh
[2026-01-28 19:08:39] -rw------- 1 boinc boinc 181594573 Jan 28 19:07 HITS.pool.root.1
[2026-01-28 19:08:39] -rw------- 1 boinc boinc    993280 Jan 28 19:08 result.tar.gz
19:08:40 (4073483): run_atlas exited; CPU time 13924.769355
19:08:40 (4073483): called boinc_finish(0)

</stderr_txt>
]]>

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