Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:24:23 (4965): wrapper (7.7.26015): starting
15:24:23 (4965): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 15:24:23] Arguments: --nthreads 8
[2026-01-28 15:24:23] Threads: 8
[2026-01-28 15:24:23] Checking for CVMFS
[2026-01-28 15:24:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 15:24:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 15:24:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 15:24:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 15:24:29] 2.11.2.0 29064 62873 131672 155622 3 11 22312138 25165824 899 130560 0 22150570 99.847 14158039 3008 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-28 15:24:29] CVMFS is ok
[2026-01-28 15:24:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 15:24:29] Checking for apptainer binary...
[2026-01-28 15:24:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 15:24:29] Running /usr/bin/apptainer --version
[2026-01-28 15:24:29] apptainer version 1.3.2-1.el7
[2026-01-28 15:24:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 15:24:45] cg-vwn462.simple-grid.lan
[2026-01-28 15:24:45] apptainer works
[2026-01-28 15:24:45] Set ATHENA_PROC_NUMBER=8
[2026-01-28 15:24:45] Set ATHENA_CORE_NUMBER=8
[2026-01-28 15:24:45] Starting ATLAS job with PandaID=6984882544
[2026-01-28 15:24:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 19:47:53]  *** The last 200 lines of the pilot log: ***
[2026-01-28 19:47:53] 2026-01-28 18:46:50,284 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6984882544/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,285 | INFO     | extracted standard info from prmon json
[2026-01-28 19:47:53] 2026-01-28 18:46:50,285 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 19:47:53] 2026-01-28 18:46:50,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 19:47:53] 2026-01-28 18:46:50,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 19:47:53] 2026-01-28 18:46:50,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 19:47:53] 2026-01-28 18:46:50,290 | INFO     | fitting pss+swap vs Time
[2026-01-28 19:47:53] 2026-01-28 18:46:50,291 | INFO     | sum of square deviations: 4672638308.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,293 | INFO     | sum of deviations: 157028225078.00006
[2026-01-28 19:47:53] 2026-01-28 18:46:50,293 | INFO     | mean x: 1769618482.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,293 | INFO     | mean y: 2714850.089068826
[2026-01-28 19:47:53] 2026-01-28 18:46:50,293 | INFO     | intersect: -59466910440.17314
[2026-01-28 19:47:53] 2026-01-28 18:46:50,294 | INFO     | chi2: 7.249048118006138
[2026-01-28 19:47:53] 2026-01-28 18:46:50,294 | INFO     | sum of square deviations: 4394577280.5
[2026-01-28 19:47:53] 2026-01-28 18:46:50,296 | INFO     | sum of deviations: 171355744098.99997
[2026-01-28 19:47:53] 2026-01-28 18:46:50,297 | INFO     | mean x: 1769618329.5
[2026-01-28 19:47:53] 2026-01-28 18:46:50,297 | INFO     | mean y: 2722546.082644628
[2026-01-28 19:47:53] 2026-01-28 18:46:50,297 | INFO     | intersect: -68999196470.84743
[2026-01-28 19:47:53] 2026-01-28 18:46:50,297 | INFO     | chi2: 6.5629128022762195
[2026-01-28 19:47:53] 2026-01-28 18:46:50,297 | INFO     | current chi2=6.5629128022762195 (change=9.465178111117869 %)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,298 | INFO     | right removable region: 241
[2026-01-28 19:47:53] 2026-01-28 18:46:50,298 | INFO     | sum of square deviations: 4394577280.5
[2026-01-28 19:47:53] 2026-01-28 18:46:50,300 | INFO     | sum of deviations: 61995896217.499985
[2026-01-28 19:47:53] 2026-01-28 18:46:50,300 | INFO     | mean x: 1769618634.5
[2026-01-28 19:47:53] 2026-01-28 18:46:50,300 | INFO     | mean y: 2766933.23553719
[2026-01-28 19:47:53] 2026-01-28 18:46:50,300 | INFO     | intersect: -24961885229.289116
[2026-01-28 19:47:53] 2026-01-28 18:46:50,301 | INFO     | chi2: 2.4834576183182047
[2026-01-28 19:47:53] 2026-01-28 18:46:50,301 | INFO     | current chi2=2.4834576183182047 (change=65.74091414637645 %)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,301 | INFO     | sum of square deviations: 4127772278.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,303 | INFO     | sum of deviations: 7958888746.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,303 | INFO     | mean x: 1769618787.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,304 | INFO     | mean y: 2797674.5147679327
[2026-01-28 19:47:53] 2026-01-28 18:46:50,304 | INFO     | intersect: -3409260476.955881
[2026-01-28 19:47:53] 2026-01-28 18:46:50,304 | INFO     | chi2: 0.8245958479388834
[2026-01-28 19:47:53] 2026-01-28 18:46:50,304 | INFO     | current chi2=0.8245958479388834 (change=66.79645982856357 %)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,305 | INFO     | sum of square deviations: 3871990738.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,307 | INFO     | sum of deviations: -3979724088.5
[2026-01-28 19:47:53] 2026-01-28 18:46:50,307 | INFO     | mean x: 1769618939.5
[2026-01-28 19:47:53] 2026-01-28 18:46:50,307 | INFO     | mean y: 2804768.0560344825
[2026-01-28 19:47:53] 2026-01-28 18:46:50,307 | INFO     | intersect: 1821661164.554464
[2026-01-28 19:47:53] 2026-01-28 18:46:50,307 | INFO     | chi2: 0.7522526531501592
[2026-01-28 19:47:53] 2026-01-28 18:46:50,308 | INFO     | current chi2=0.7522526531501592 (change=8.77316990736122 %)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,308 | INFO     | left removable region: 30
[2026-01-28 19:47:53] 2026-01-28 18:46:50,308 | INFO     | sum of square deviations: 2912836010.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,310 | INFO     | sum of deviations: 8220817682.999998
[2026-01-28 19:47:53] 2026-01-28 18:46:50,310 | INFO     | mean x: 1769619214.0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,310 | INFO     | mean y: 2817838.6398104266
[2026-01-28 19:47:53] 2026-01-28 18:46:50,310 | INFO     | intersect: -4991530238.864133
[2026-01-28 19:47:53] 2026-01-28 18:46:50,310 | INFO     | chi2: 0.0004229642136017197
[2026-01-28 19:47:53] 2026-01-28 18:46:50,311 | INFO     | current memory leak: 2.82 B/s (using 211 data points, chi2=0.00)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,311 | INFO     | could have reported an average CPU frequency of 2250 MHz (12 samples)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | ..............................
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . Timing measurements:
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . get job = 0 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . initial setup = 125 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . payload setup = 165 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . stage-in = 0 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . payload execution = 15142 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . stage-out = 4 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,312 | INFO     | . log creation = 1 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,313 | INFO     | ..............................
[2026-01-28 19:47:53] 2026-01-28 18:46:50,430 | INFO     | 
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | job summary report
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | --------------------------------------------------
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | PanDA job id: 6984882544
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | task id: 48317971
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | errors: (none)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | pilot state: finished 
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | transexitcode: 0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | exeerrorcode: 0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | exeerrordiag: 
[2026-01-28 19:47:53] 2026-01-28 18:46:50,431 | INFO     | exitcode: 0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | exitmsg: OK
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | cpuconsumptiontime: 57274 s
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | nevents: 400
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | neventsw: 0
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | pid: 13354
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | pgrp: 13354
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | corecount: 8
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | event service: False
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | sizes: {0: 2283789, 1: 2284250, 12: 2284250, 15312: 2315234, 15318: 2324262, 15319: 2324318, 15321: 2324640}
[2026-01-28 19:47:53] 2026-01-28 18:46:50,432 | INFO     | --------------------------------------------------
[2026-01-28 19:47:53] 2026-01-28 18:46:50,433 | INFO     | 
[2026-01-28 19:47:53] 2026-01-28 18:46:50,433 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2026-01-28 19:47:53] 2026-01-28 18:46:50,492 | INFO     | time since job start (15333s) is within the limit (349056.0s)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,879 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,882 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 19:47:53] 2026-01-28 18:46:50,882 | INFO     | job 6984882544 has completed (purged errors)
[2026-01-28 19:47:53] 2026-01-28 18:46:50,882 | INFO     | overall cleanup function is called
[2026-01-28 19:47:53] 2026-01-28 18:46:51,891 | INFO     | --- collectZombieJob: --- 10, [13354]
[2026-01-28 19:47:53] 2026-01-28 18:46:51,891 | INFO     | zombie collector waiting for pid 13354
[2026-01-28 19:47:53] 2026-01-28 18:46:51,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 19:47:53] 2026-01-28 18:46:51,891 | INFO     | collected zombie processes
[2026-01-28 19:47:53] 2026-01-28 18:46:51,891 | INFO     | will attempt to kill all subprocesses of pid=13354
[2026-01-28 19:47:53] 2026-01-28 18:46:51,967 | INFO     | process IDs to be killed: [13354] (in reverse order)
[2026-01-28 19:47:53] 2026-01-28 18:46:53,009 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 19:47:53] 2026-01-28 18:46:53,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 19:47:53] 2026-01-28 18:46:53,011 | INFO     | did not find any defunct processes belonging to 13354
[2026-01-28 19:47:53] 2026-01-28 18:46:53,013 | INFO     | did not find any defunct processes belonging to 13354
[2026-01-28 19:47:53] 2026-01-28 18:46:53,013 | INFO     | ready for new job
[2026-01-28 19:47:53] 2026-01-28 18:46:53,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 19:47:53] 2026-01-28 18:46:53,015 | INFO     | **************************************
[2026-01-28 19:47:53] 2026-01-28 18:46:53,015 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 19:47:53] 2026-01-28 18:46:53,016 | INFO     | **************************************
[2026-01-28 19:47:53] 2026-01-28 18:46:53,016 | INFO     | 
[2026-01-28 19:47:53] 2026-01-28 18:46:53,016 | INFO     | pilot is running in a VM
[2026-01-28 19:47:53] 2026-01-28 18:46:53,016 | INFO     | architecture information:
[2026-01-28 19:47:53] 2026-01-28 18:46:53,031 | INFO     | executing command: cat /etc/os-release
[2026-01-28 19:47:53] 2026-01-28 18:46:53,330 | INFO     | cat /etc/os-release:
[2026-01-28 19:47:53] NAME="CentOS Linux"
[2026-01-28 19:47:53] VERSION="7 (Core)"
[2026-01-28 19:47:53] ID="centos"
[2026-01-28 19:47:53] ID_LIKE="rhel fedora"
[2026-01-28 19:47:53] VERSION_ID="7"
[2026-01-28 19:47:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 19:47:53] ANSI_COLOR="0;31"
[2026-01-28 19:47:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 19:47:53] HOME_URL="https://www.centos.org/"
[2026-01-28 19:47:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 19:47:53] 
[2026-01-28 19:47:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 19:47:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 19:47:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 19:47:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 19:47:53] 
[2026-01-28 19:47:53] 2026-01-28 18:46:53,330 | INFO     | **************************************
[2026-01-28 19:47:53] 2026-01-28 18:46:53,834 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2026-01-28 19:47:53] 2026-01-28 18:46:54,069 | INFO     | sufficient remaining disk space (494286143488 B)
[2026-01-28 19:47:53] 2026-01-28 18:46:54,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 19:47:53] 2026-01-28 18:46:54,070 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 19:47:53] 2026-01-28 18:46:54,070 | INFO     | update_server=False
[2026-01-28 19:47:53] 2026-01-28 18:46:54,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 19:47:53] 2026-01-28 18:46:54,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 19:47:53] 2026-01-28 18:46:54,101 | INFO     | all job control threads have been joined
[2026-01-28 19:47:53] 2026-01-28 18:46:54,276 | INFO     | all data control threads have been joined
[2026-01-28 19:47:53] 2026-01-28 18:46:54,327 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 19:47:53] 2026-01-28 18:46:54,327 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 19:47:53] 2026-01-28 18:46:54,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 19:47:53] 2026-01-28 18:46:54,327 | INFO     | will abort loop
[2026-01-28 19:47:53] 2026-01-28 18:46:54,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 19:47:53] 2026-01-28 18:46:54,894 | INFO     | all payload control threads have been joined
[2026-01-28 19:47:53] 2026-01-28 18:46:55,076 | INFO     | [job] retrieve thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,107 | INFO     | [job] control thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,140 | INFO     | [payload] failed_post thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,248 | INFO     | [payload] validate_post thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,282 | INFO     | [data] control thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,333 | INFO     | [job] job monitor thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 19:47:53] 2026-01-28 18:46:55,529 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,762 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,773 | INFO     | [data] copytool_in thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,900 | INFO     | [payload] control thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,904 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,932 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:55,986 | INFO     | [job] validate thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:56,078 | INFO     | [data] copytool_out thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:56,451 | INFO     | [job] queue monitor thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:46:58,533 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 19:47:53] 2026-01-28 18:47:23,623 | INFO     | PID=8929 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-28 19:47:53] 2026-01-28 18:47:23,624 | INFO     | .. there are 2 such processes running
[2026-01-28 19:47:53] 2026-01-28 18:47:23,625 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 19:47:53] 2026-01-28 18:47:23,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 19:47:53] 2026-01-28 18:47:23,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 19:47:53] 2026-01-28 18:47:42,365 | INFO     | [monitor] cgroup control has ended
[2026-01-28 19:47:53] 2026-01-28 18:47:43,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026606360384)>', '<ExcThread(monitor, started 140026159539968)>']
[2026-01-28 19:47:53] 2026-01-28 18:47:43,745 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 19:47:53] 2026-01-28 18:47:43,745 | INFO     | [monitor] control thread has ended
[2026-01-28 19:47:53] 2026-01-28 18:47:48,576 | INFO     | all workflow threads have been joined
[2026-01-28 19:47:53] 2026-01-28 18:47:48,576 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 19:47:53] 2026-01-28 18:47:48,576 | INFO     | traces error code: 0
[2026-01-28 19:47:53] 2026-01-28 18:47:48,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 19:47:53] 2026-01-28 18:47:48,713 [wrapper] ==== pilot stdout END ====
[2026-01-28 19:47:53] 2026-01-28 18:47:48,723 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 19:47:53] 2026-01-28 18:47:48,799 [wrapper] pilotpid: 8929
[2026-01-28 19:47:53] 2026-01-28 18:47:48,905 [wrapper] Pilot exit status: 0
[2026-01-28 19:47:53] 2026-01-28 18:47:49,496 [wrapper] pandaids: 6984882544
[2026-01-28 19:47:53] 2026-01-28 18:47:50,767 [wrapper] cleanup supervisor_pilot 19531 8930
[2026-01-28 19:47:53] 2026-01-28 18:47:50,827 [wrapper] Test setup, not cleaning
[2026-01-28 19:47:53] 2026-01-28 18:47:50,942 [wrapper] apfmon messages muted
[2026-01-28 19:47:53] 2026-01-28 18:47:51,071 [wrapper] ==== wrapper stdout END ====
[2026-01-28 19:47:53] 2026-01-28 18:47:51,204 [wrapper] ==== wrapper stderr END ====
[2026-01-28 19:47:53]  *** Error codes and diagnostics ***
[2026-01-28 19:47:53]     "exeErrorCode": 0,
[2026-01-28 19:47:53]     "exeErrorDiag": "",
[2026-01-28 19:47:53]     "pilotErrorCode": 0,
[2026-01-28 19:47:53]     "pilotErrorDiag": "",
[2026-01-28 19:47:53]  *** Listing of results directory ***
[2026-01-28 19:47:53] total 722776
[2026-01-28 19:47:53] -rwx------. 1 boinc boinc     36322 Jan 28 13:23 runpilot2-wrapper.sh
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc    584422 Jan 28 13:23 pilot3.tar.gz
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc      5111 Jan 28 13:26 queuedata.json
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc       100 Jan 28 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 19:47:53] -rwxr-xr-x. 1 boinc boinc      7986 Jan 28 15:23 run_atlas
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc       105 Jan 28 15:23 job.xml
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc      6392 Jan 28 15:24 init_data.xml
[2026-01-28 19:47:53] -rw-r--r--. 2 boinc boinc 533326682 Jan 28 15:24 EVNT.48317969._000031.pool.root.1
[2026-01-28 19:47:53] -rw-r--r--. 2 boinc boinc     15845 Jan 28 15:24 start_atlas.sh
[2026-01-28 19:47:53] drwxrwx--x. 2 boinc boinc        68 Jan 28 15:24 shared
[2026-01-28 19:47:53] -rw-r--r--. 2 boinc boinc    597762 Jan 28 15:24 input.tar.gz
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc         0 Jan 28 15:24 boinc_lockfile
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc      2512 Jan 28 15:24 pandaJob.out
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc       413 Jan 28 15:31 workernode_map.json
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc   1005192 Jan 28 15:31 agis_schedconf.cvmfs.json
[2026-01-28 19:47:53] drwx------. 5 boinc boinc      4096 Jan 28 15:31 pilot3
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc 197579527 Jan 28 19:45 HITS.48317971._002286.pool.root.1
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc       532 Jan 28 19:45 boinc_task_state.xml
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc      1010 Jan 28 19:46 memory_monitor_summary.json
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc   1516246 Jan 28 19:46 agis_ddmendpoints.agis.ALL.json
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc    485863 Jan 28 19:46 log.48317971._002286.job.log.tgz.1
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc      6310 Jan 28 19:46 heartbeat.json
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc        95 Jan 28 19:47 pilot_heartbeat.json
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc      8192 Jan 28 19:47 boinc_mmap_file
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc        28 Jan 28 19:47 wrapper_checkpoint.txt
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc      5066 Jan 28 19:47 pilotlog.txt
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc   2161131 Jan 28 19:47 log.48317971._002286.job.log.1
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc       357 Jan 28 19:47 output.list
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc       620 Jan 28 19:47 runtime_log
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc   2662400 Jan 28 19:47 result.tar.gz
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc       655 Jan 28 19:47 UnIODmIlJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmQpFKDmvtBzNn.diag
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc      8832 Jan 28 19:47 runtime_log.err
[2026-01-28 19:47:53] -rw-r--r--. 1 boinc boinc     20726 Jan 28 19:47 stderr.txt
[2026-01-28 19:47:53] HITS file was successfully produced:
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc 197579527 Jan 28 19:45 shared/HITS.pool.root.1
[2026-01-28 19:47:53]  *** Contents of shared directory: ***
[2026-01-28 19:47:53] total 716980
[2026-01-28 19:47:53] -rw-r--r--. 2 boinc boinc 533326682 Jan 28 15:24 ATLAS.root_0
[2026-01-28 19:47:53] -rw-r--r--. 2 boinc boinc     15845 Jan 28 15:24 start_atlas.sh
[2026-01-28 19:47:53] -rw-r--r--. 2 boinc boinc    597762 Jan 28 15:24 input.tar.gz
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc 197579527 Jan 28 19:45 HITS.pool.root.1
[2026-01-28 19:47:53] -rw-------. 1 boinc boinc   2662400 Jan 28 19:47 result.tar.gz
19:47:55 (4965): run_atlas exited; CPU time 57426.706466
19:47:55 (4965): called boinc_finish(0)

</stderr_txt>
]]>

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