Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:01:22 (2472673): wrapper (7.7.26015): starting
17:01:22 (2472673): wrapper: running run_atlas (--nthreads 2)
[2026-01-28 17:01:22] Arguments: --nthreads 2
[2026-01-28 17:01:22] Threads: 2
[2026-01-28 17:01:22] Checking for CVMFS
[2026-01-28 17:01:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 17:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 17:01:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 17:01:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 17:01:23] 2.9.2.0 2457232 145 46816 155622 2 188 23905574 36864000 0 130560 0 40914 99.959 2927 14072 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 17:01:23] CVMFS is ok
[2026-01-28 17:01:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 17:01:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 17:01:23] Further information can be found at the LHC@home message board.
[2026-01-28 17:01:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 17:01:23] Checking for apptainer binary...
[2026-01-28 17:01:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 17:01:23] Running /usr/bin/apptainer --version
[2026-01-28 17:01:23] apptainer version 1.4.1-1.1
[2026-01-28 17:01:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 17:01:23] thA310
[2026-01-28 17:01:23] apptainer works
[2026-01-28 17:01:23] Set ATHENA_PROC_NUMBER=2
[2026-01-28 17:01:23] Set ATHENA_CORE_NUMBER=2
[2026-01-28 17:01:23] Starting ATLAS job with PandaID=6985074019
[2026-01-28 17:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 19:17:01]  *** The last 200 lines of the pilot log: ***
[2026-01-28 19:17:01] 2026-01-28 18:16:05,541 | INFO     | aborting job monitoring since job object (job id=6985074019) has expired
[2026-01-28 19:17:01] 2026-01-28 18:16:06,071 | INFO     | --- collectZombieJob: --- 10, [2481114]
[2026-01-28 19:17:01] 2026-01-28 18:16:06,071 | INFO     | zombie collector waiting for pid 2481114
[2026-01-28 19:17:01] 2026-01-28 18:16:06,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 19:17:01] 2026-01-28 18:16:06,072 | INFO     | collected zombie processes
[2026-01-28 19:17:01] 2026-01-28 18:16:06,072 | INFO     | will attempt to kill all subprocesses of pid=2481114
[2026-01-28 19:17:01] 2026-01-28 18:16:06,109 | INFO     | process IDs to be killed: [2481114] (in reverse order)
[2026-01-28 19:17:01] 2026-01-28 18:16:06,132 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 19:17:01] 2026-01-28 18:16:06,132 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 19:17:01] 2026-01-28 18:16:06,133 | INFO     | did not find any defunct processes belonging to 2481114
[2026-01-28 19:17:01] 2026-01-28 18:16:06,134 | INFO     | did not find any defunct processes belonging to 2481114
[2026-01-28 19:17:01] 2026-01-28 18:16:06,134 | INFO     | ready for new job
[2026-01-28 19:17:01] 2026-01-28 18:16:06,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 19:17:01] 2026-01-28 18:16:06,135 | INFO     | **************************************
[2026-01-28 19:17:01] 2026-01-28 18:16:06,135 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 19:17:01] 2026-01-28 18:16:06,135 | INFO     | **************************************
[2026-01-28 19:17:01] 2026-01-28 18:16:06,135 | INFO     | 
[2026-01-28 19:17:01] 2026-01-28 18:16:06,135 | INFO     | architecture information:
[2026-01-28 19:17:01] 2026-01-28 18:16:06,135 | INFO     | executing command: cat /etc/os-release
[2026-01-28 19:17:01] 2026-01-28 18:16:06,144 | INFO     | cat /etc/os-release:
[2026-01-28 19:17:01] NAME="CentOS Linux"
[2026-01-28 19:17:01] VERSION="7 (Core)"
[2026-01-28 19:17:01] ID="centos"
[2026-01-28 19:17:01] ID_LIKE="rhel fedora"
[2026-01-28 19:17:01] VERSION_ID="7"
[2026-01-28 19:17:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 19:17:01] ANSI_COLOR="0;31"
[2026-01-28 19:17:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 19:17:01] HOME_URL="https://www.centos.org/"
[2026-01-28 19:17:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 19:17:01] 
[2026-01-28 19:17:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 19:17:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 19:17:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 19:17:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 19:17:01] 
[2026-01-28 19:17:01] 2026-01-28 18:16:06,144 | INFO     | **************************************
[2026-01-28 19:17:01] 2026-01-28 18:16:06,648 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 19:17:01] 2026-01-28 18:16:06,659 | INFO     | sufficient remaining disk space (499725107200 B)
[2026-01-28 19:17:01] 2026-01-28 18:16:06,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 19:17:01] 2026-01-28 18:16:06,659 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 19:17:01] 2026-01-28 18:16:06,659 | INFO     | update_server=False
[2026-01-28 19:17:01] 2026-01-28 18:16:06,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 19:17:01] 2026-01-28 18:16:06,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 19:17:01] 2026-01-28 18:16:06,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 19:17:01] 2026-01-28 18:16:06,660 | INFO     | aborting loop
[2026-01-28 19:17:01] 2026-01-28 18:16:06,722 | INFO     | all data control threads have been joined
[2026-01-28 19:17:01] 2026-01-28 18:16:07,014 | INFO     | all job control threads have been joined
[2026-01-28 19:17:01] 2026-01-28 18:16:07,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 19:17:01] 2026-01-28 18:16:07,115 | INFO     | all payload control threads have been joined
[2026-01-28 19:17:01] 2026-01-28 18:16:07,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 19:17:01] 2026-01-28 18:16:07,661 | INFO     | [job] job monitor thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:07,664 | INFO     | [job] retrieve thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:07,665 | INFO     | [job] queue monitor thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:07,666 | INFO     | [payload] failed_post thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:07,728 | INFO     | [data] control thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:07,918 | INFO     | job.realtimelogging is not enabled
[2026-01-28 19:17:01] 2026-01-28 18:16:08,020 | INFO     | [job] control thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,121 | INFO     | [payload] control thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,255 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,482 | INFO     | [job] validate thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,675 | INFO     | [data] copytool_in thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,676 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,681 | INFO     | [payload] validate_post thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,707 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:08,924 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:09,071 | INFO     | [data] copytool_out thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:11,595 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 19:17:01] 2026-01-28 18:16:36,232 [wrapper] supervise_pilot (15 min periods counter: 10)
[2026-01-28 19:17:01] 2026-01-28 18:16:36,467 | INFO     | PID=2476704 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 19:17:01] 2026-01-28 18:16:36,467 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 19:17:01] 2026-01-28 18:16:36,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 19:17:01] 2026-01-28 18:16:36,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 19:17:01] 2026-01-28 18:16:54,978 | INFO     | [monitor] cgroup control has ended
[2026-01-28 19:17:01] 2026-01-28 18:16:55,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878473377600)>', '<ExcThread(monitor, started 139877748303616)>']
[2026-01-28 19:17:01] 2026-01-28 18:16:56,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 19:17:01] 2026-01-28 18:16:56,565 | INFO     | [monitor] control thread has ended
[2026-01-28 19:17:01] 2026-01-28 18:17:01,010 | INFO     | all workflow threads have been joined
[2026-01-28 19:17:01] 2026-01-28 18:17:01,010 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 19:17:01] 2026-01-28 18:17:01,010 | INFO     | traces error code: 0
[2026-01-28 19:17:01] 2026-01-28 18:17:01,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 19:17:01] 2026-01-28 18:17:01,049 [wrapper] ==== pilot stdout END ====
[2026-01-28 19:17:01] 2026-01-28 18:17:01,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 19:17:01] 2026-01-28 18:17:01,053 [wrapper] pilotpid: 2476704
[2026-01-28 19:17:01] 2026-01-28 18:17:01,055 [wrapper] Pilot exit status: 0
[2026-01-28 19:17:01] 2026-01-28 18:17:01,061 [wrapper] pandaids: 6985074019
[2026-01-28 19:17:01] 2026-01-28 18:17:01,074 [wrapper] cleanup supervisor_pilot 2487362 2476705
[2026-01-28 19:17:01] 2026-01-28 18:17:01,076 [wrapper] Test setup, not cleaning
[2026-01-28 19:17:01] 2026-01-28 18:17:01,078 [wrapper] apfmon messages muted
[2026-01-28 19:17:01] 2026-01-28 18:17:01,080 [wrapper] ==== wrapper stdout END ====
[2026-01-28 19:17:01] 2026-01-28 18:17:01,082 [wrapper] ==== wrapper stderr END ====
[2026-01-28 19:17:01]  *** Error codes and diagnostics ***
[2026-01-28 19:17:01]     "exeErrorCode": 0,
[2026-01-28 19:17:01]     "exeErrorDiag": "",
[2026-01-28 19:17:01]     "pilotErrorCode": 0,
[2026-01-28 19:17:01]     "pilotErrorDiag": "",
[2026-01-28 19:17:01]  *** Listing of results directory ***
[2026-01-28 19:17:01] total 666732
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc    584422 Jan 28 13:08 pilot3.tar.gz
[2026-01-28 19:17:01] -rwx------ 1 boinc boinc     36322 Jan 28 13:21 runpilot2-wrapper.sh
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc      5111 Jan 28 13:23 queuedata.json
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc       100 Jan 28 17:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 19:17:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 17:01 run_atlas
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc       105 Jan 28 17:01 job.xml
[2026-01-28 19:17:01] -rw-r--r-- 2 boinc boinc 490094457 Jan 28 17:01 EVNT.48317869._000092.pool.root.1
[2026-01-28 19:17:01] -rw-r--r-- 2 boinc boinc    597761 Jan 28 17:01 input.tar.gz
[2026-01-28 19:17:01] -rw-r--r-- 2 boinc boinc     15845 Jan 28 17:01 start_atlas.sh
[2026-01-28 19:17:01] drwxrwx--x 2 boinc boinc      4096 Jan 28 17:01 shared
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc         0 Jan 28 17:01 boinc_setup_complete
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc      6206 Jan 28 17:01 init_data.xml
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc         0 Jan 28 17:01 boinc_lockfile
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc      2515 Jan 28 17:01 pandaJob.out
[2026-01-28 19:17:01] -rw------- 1 boinc boinc   1005192 Jan 28 17:01 agis_schedconf.cvmfs.json
[2026-01-28 19:17:01] -rw------- 1 boinc boinc   1516246 Jan 28 17:01 agis_ddmendpoints.agis.ALL.json
[2026-01-28 19:17:01] -rw------- 1 boinc boinc       419 Jan 28 17:01 workernode_map.json
[2026-01-28 19:17:01] drwx------ 5 boinc boinc      4096 Jan 28 17:01 pilot3
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc       531 Jan 28 19:15 boinc_task_state.xml
[2026-01-28 19:17:01] -rw------- 1 boinc boinc 185801711 Jan 28 19:15 HITS.48317872._004600.pool.root.1
[2026-01-28 19:17:01] -rw------- 1 boinc boinc      1019 Jan 28 19:15 memory_monitor_summary.json
[2026-01-28 19:17:01] -rw------- 1 boinc boinc    301622 Jan 28 19:16 log.48317872._004600.job.log.tgz.1
[2026-01-28 19:17:01] -rw------- 1 boinc boinc      6296 Jan 28 19:16 heartbeat.json
[2026-01-28 19:17:01] -rw------- 1 boinc boinc        95 Jan 28 19:16 pilot_heartbeat.json
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc      8192 Jan 28 19:16 boinc_mmap_file
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc        27 Jan 28 19:16 wrapper_checkpoint.txt
[2026-01-28 19:17:01] -rw------- 1 boinc boinc      4820 Jan 28 19:17 pilotlog.txt
[2026-01-28 19:17:01] -rw------- 1 boinc boinc   1154971 Jan 28 19:17 log.48317872._004600.job.log.1
[2026-01-28 19:17:01] -rw------- 1 boinc boinc       357 Jan 28 19:17 output.list
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc       620 Jan 28 19:17 runtime_log
[2026-01-28 19:17:01] -rw------- 1 boinc boinc   1474560 Jan 28 19:17 result.tar.gz
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc      8896 Jan 28 19:17 runtime_log.err
[2026-01-28 19:17:01] -rw------- 1 boinc boinc       657 Jan 28 19:17 22FNDm8iJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmvgFKDmZ2y9Jm.diag
[2026-01-28 19:17:01] -rw-r--r-- 1 boinc boinc     10934 Jan 28 19:17 stderr.txt
[2026-01-28 19:17:01] HITS file was successfully produced:
[2026-01-28 19:17:01] -rw------- 1 boinc boinc 185801711 Jan 28 19:15 shared/HITS.pool.root.1
[2026-01-28 19:17:01]  *** Contents of shared directory: ***
[2026-01-28 19:17:01] total 662104
[2026-01-28 19:17:01] -rw-r--r-- 2 boinc boinc 490094457 Jan 28 17:01 ATLAS.root_0
[2026-01-28 19:17:01] -rw-r--r-- 2 boinc boinc    597761 Jan 28 17:01 input.tar.gz
[2026-01-28 19:17:01] -rw-r--r-- 2 boinc boinc     15845 Jan 28 17:01 start_atlas.sh
[2026-01-28 19:17:01] -rw------- 1 boinc boinc 185801711 Jan 28 19:15 HITS.pool.root.1
[2026-01-28 19:17:01] -rw------- 1 boinc boinc   1474560 Jan 28 19:17 result.tar.gz
19:17:02 (2472673): run_atlas exited; CPU time 15666.049974
19:17:02 (2472673): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN