Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:21:33 (3896427): wrapper (7.7.26015): starting
09:21:33 (3896427): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 09:21:33] Arguments: --nthreads 8
[2026-01-28 09:21:33] Threads: 8
[2026-01-28 09:21:33] Checking for CVMFS
[2026-01-28 09:21:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 09:21:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 09:21:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 09:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 09:21:34] 2.13.3.0 8838 48980 383132 155622 1 632 36515993 39288833 17607 16776704 0 44081947 99.494 57360798 31347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-28 09:21:34] CVMFS is ok
[2026-01-28 09:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 09:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 09:21:34] Further information can be found at the LHC@home message board.
[2026-01-28 09:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 09:21:34] Checking for apptainer binary...
[2026-01-28 09:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 09:21:34] Running /usr/bin/apptainer --version
[2026-01-28 09:21:34] apptainer version 1.4.5-2.el9
[2026-01-28 09:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 09:21:34] c-211-28.aglt2.org
[2026-01-28 09:21:34] apptainer works
[2026-01-28 09:21:34] Set ATHENA_PROC_NUMBER=8
[2026-01-28 09:21:34] Set ATHENA_CORE_NUMBER=8
[2026-01-28 09:21:34] Starting ATLAS job with PandaID=6984546474
[2026-01-28 09:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:40:08 (3896427): BOINC client no longer exists - exiting
09:40:08 (3896427): timer handler: client dead, exiting
09:47:32 (4032108): wrapper (7.7.26015): starting
09:47:32 (4032108): wrapper: running run_atlas (--nthreads 9)
[2026-01-28 09:47:32] Arguments: --nthreads 9
[2026-01-28 09:47:32] Threads: 9
[2026-01-28 09:47:32] This job has been restarted, cleaning up previous attempt
[2026-01-28 09:47:32] Checking for CVMFS
[2026-01-28 09:47:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 09:47:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 09:47:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 09:47:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 09:47:34] 2.13.3.0 8838 49006 383092 155622 3 659 38609808 39288833 18254 16776704 0 44172906 99.494 57959249 31563 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-28 09:47:34] CVMFS is ok
[2026-01-28 09:47:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 09:47:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 09:47:34] Further information can be found at the LHC@home message board.
[2026-01-28 09:47:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 09:47:34] Checking for apptainer binary...
[2026-01-28 09:47:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 09:47:34] Running /usr/bin/apptainer --version
[2026-01-28 09:47:34] apptainer version 1.4.5-2.el9
[2026-01-28 09:47:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 09:47:35] c-211-28.aglt2.org
[2026-01-28 09:47:35] apptainer works
[2026-01-28 09:47:35] Set ATHENA_PROC_NUMBER=9
[2026-01-28 09:47:35] Set ATHENA_CORE_NUMBER=9
[2026-01-28 09:47:35] Starting ATLAS job with PandaID=6984546474
[2026-01-28 09:47:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 14:46:03]  *** The last 200 lines of the pilot log: ***
[2026-01-28 14:46:03] 2026-01-28 19:45:24,197 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,197 | INFO     | log transfer has been attempted: DONE
[2026-01-28 14:46:03] 2026-01-28 19:45:24,197 | INFO     | job 6984546474 has finished - writing final server update
[2026-01-28 14:46:03] 2026-01-28 19:45:24,197 | INFO     | total number of processed events: 400 (read)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,258 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6984546474/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,258 | INFO     | extracted standard info from prmon json
[2026-01-28 14:46:03] 2026-01-28 19:45:24,259 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 14:46:03] 2026-01-28 19:45:24,259 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 14:46:03] 2026-01-28 19:45:24,259 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 14:46:03] 2026-01-28 19:45:24,259 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 14:46:03] 2026-01-28 19:45:24,324 | INFO     | fitting pss+swap vs Time
[2026-01-28 14:46:03] 2026-01-28 19:45:24,324 | INFO     | sum of square deviations: 7719876610.75
[2026-01-28 14:46:03] 2026-01-28 19:45:24,338 | INFO     | sum of deviations: 35910753824.750015
[2026-01-28 14:46:03] 2026-01-28 19:45:24,338 | INFO     | mean x: 1769620625.25
[2026-01-28 14:46:03] 2026-01-28 19:45:24,339 | INFO     | mean y: 2655935.633561644
[2026-01-28 14:46:03] 2026-01-28 19:45:24,339 | INFO     | intersect: -8229135042.48404
[2026-01-28 14:46:03] 2026-01-28 19:45:24,339 | INFO     | chi2: 3.7951317067893515
[2026-01-28 14:46:03] 2026-01-28 19:45:24,340 | INFO     | sum of square deviations: 7330095026.411131
[2026-01-28 14:46:03] 2026-01-28 19:45:24,347 | INFO     | sum of deviations: 77736017572.9861
[2026-01-28 14:46:03] 2026-01-28 19:45:24,348 | INFO     | mean x: 1769620472.7595818
[2026-01-28 14:46:03] 2026-01-28 19:45:24,348 | INFO     | mean y: 2672125.5505226483
[2026-01-28 14:46:03] 2026-01-28 19:45:24,348 | INFO     | intersect: -18764239854.75798
[2026-01-28 14:46:03] 2026-01-28 19:45:24,349 | INFO     | chi2: 2.1654737615492174
[2026-01-28 14:46:03] 2026-01-28 19:45:24,353 | INFO     | current chi2=2.1654737615492174 (change=42.940748072714726 %)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,354 | INFO     | sum of square deviations: 6953645145.053223
[2026-01-28 14:46:03] 2026-01-28 19:45:24,356 | INFO     | sum of deviations: 76342980384.10648
[2026-01-28 14:46:03] 2026-01-28 19:45:24,361 | INFO     | mean x: 1769620320.2659574
[2026-01-28 14:46:03] 2026-01-28 19:45:24,361 | INFO     | mean y: 2671561.1985815605
[2026-01-28 14:46:03] 2026-01-28 19:45:24,362 | INFO     | intersect: -19425712628.56527
[2026-01-28 14:46:03] 2026-01-28 19:45:24,362 | INFO     | chi2: 2.165928672706717
[2026-01-28 14:46:03] 2026-01-28 19:45:24,362 | INFO     | current chi2=2.165928672706717 (change=-0.02100746569074914 %)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,363 | INFO     | right removable region: 281
[2026-01-28 14:46:03] 2026-01-28 19:45:24,363 | INFO     | sum of square deviations: 7329979247.888527
[2026-01-28 14:46:03] 2026-01-28 19:45:24,370 | INFO     | sum of deviations: -29882487639.40766
[2026-01-28 14:46:03] 2026-01-28 19:45:24,371 | INFO     | mean x: 1769620777.7630663
[2026-01-28 14:46:03] 2026-01-28 19:45:24,371 | INFO     | mean y: 2681548.5087108016
[2026-01-28 14:46:03] 2026-01-28 19:45:24,371 | INFO     | intersect: 7216981784.512325
[2026-01-28 14:46:03] 2026-01-28 19:45:24,372 | INFO     | chi2: 1.8260001296788695
[2026-01-28 14:46:03] 2026-01-28 19:45:24,372 | INFO     | current chi2=1.8260001296788695 (change=51.88572437651578 %)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,372 | INFO     | sum of square deviations: 6953430972.425529
[2026-01-28 14:46:03] 2026-01-28 19:45:24,379 | INFO     | sum of deviations: -46706724915.23405
[2026-01-28 14:46:03] 2026-01-28 19:45:24,380 | INFO     | mean x: 1769620930.2765958
[2026-01-28 14:46:03] 2026-01-28 19:45:24,380 | INFO     | mean y: 2688348.4645390073
[2026-01-28 14:46:03] 2026-01-28 19:45:24,380 | INFO     | intersect: 11889366784.25234
[2026-01-28 14:46:03] 2026-01-28 19:45:24,385 | INFO     | chi2: 1.7094469203144942
[2026-01-28 14:46:03] 2026-01-28 19:45:24,385 | INFO     | current chi2=1.7094469203144942 (change=6.3829792490142365 %)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,385 | INFO     | left removable region: 20
[2026-01-28 14:46:03] 2026-01-28 19:45:24,386 | INFO     | sum of square deviations: 5512842424.827585
[2026-01-28 14:46:03] 2026-01-28 19:45:24,388 | INFO     | sum of deviations: -11585109356.7931
[2026-01-28 14:46:03] 2026-01-28 19:45:24,393 | INFO     | mean x: 1769620899.7931035
[2026-01-28 14:46:03] 2026-01-28 19:45:24,393 | INFO     | mean y: 2708810.114942529
[2026-01-28 14:46:03] 2026-01-28 19:45:24,394 | INFO     | intersect: 3721525722.3924394
[2026-01-28 14:46:03] 2026-01-28 19:45:24,394 | INFO     | chi2: 0.0078138976620248
[2026-01-28 14:46:03] 2026-01-28 19:45:24,394 | INFO     | current memory leak: -2.10 B/s (using 261 data points, chi2=0.01)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,395 | INFO     | could have reported an average CPU frequency of 2899 MHz (13 samples)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | ..............................
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | . Timing measurements:
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | . get job = 0 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | . initial setup = 1 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | . payload setup = 24 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | . stage-in = 0 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,396 | INFO     | . payload execution = 17782 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,397 | INFO     | . stage-out = 6 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,401 | INFO     | . log creation = 0 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,401 | INFO     | ..............................
[2026-01-28 14:46:03] 2026-01-28 19:45:24,619 | INFO     | 
[2026-01-28 14:46:03] 2026-01-28 19:45:24,622 | INFO     | job summary report
[2026-01-28 14:46:03] 2026-01-28 19:45:24,622 | INFO     | --------------------------------------------------
[2026-01-28 14:46:03] 2026-01-28 19:45:24,622 | INFO     | PanDA job id: 6984546474
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | task id: 48317931
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | errors: (none)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | pilot state: finished 
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | transexitcode: 0
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | exeerrorcode: 0
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | exeerrordiag: 
[2026-01-28 14:46:03] 2026-01-28 19:45:24,623 | INFO     | exitcode: 0
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | exitmsg: OK
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | cpuconsumptiontime: 79225 s
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | nevents: 400
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | neventsw: 0
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | pid: 4048287
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | pgrp: 4048287
[2026-01-28 14:46:03] 2026-01-28 19:45:24,624 | INFO     | corecount: 9
[2026-01-28 14:46:03] 2026-01-28 19:45:24,625 | INFO     | event service: False
[2026-01-28 14:46:03] 2026-01-28 19:45:24,625 | INFO     | sizes: {0: 2283689, 1: 2283773, 2: 2283773, 3: 2284262, 14: 2284262, 17813: 2316571, 17820: 2325569, 17821: 2325625, 17822: 2325819}
[2026-01-28 14:46:03] 2026-01-28 19:45:24,625 | INFO     | --------------------------------------------------
[2026-01-28 14:46:03] 2026-01-28 19:45:24,625 | INFO     | 
[2026-01-28 14:46:03] 2026-01-28 19:45:24,625 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-28 14:46:03] 2026-01-28 19:45:24,719 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,719 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,719 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,719 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,721 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,721 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,722 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,723 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,724 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 14:46:03] 2026-01-28 19:45:24,724 | INFO     | job 6984546474 has completed (purged errors)
[2026-01-28 14:46:03] 2026-01-28 19:45:24,724 | INFO     | overall cleanup function is called
[2026-01-28 14:46:03] 2026-01-28 19:45:25,752 | INFO     | --- collectZombieJob: --- 10, [4048287]
[2026-01-28 14:46:03] 2026-01-28 19:45:25,752 | INFO     | zombie collector waiting for pid 4048287
[2026-01-28 14:46:03] 2026-01-28 19:45:25,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 14:46:03] 2026-01-28 19:45:25,752 | INFO     | collected zombie processes
[2026-01-28 14:46:03] 2026-01-28 19:45:25,753 | INFO     | will attempt to kill all subprocesses of pid=4048287
[2026-01-28 14:46:03] 2026-01-28 19:45:27,278 | INFO     | process IDs to be killed: [4048287] (in reverse order)
[2026-01-28 14:46:03] 2026-01-28 19:45:27,517 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 14:46:03] 2026-01-28 19:45:27,517 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 14:46:03] 2026-01-28 19:45:27,555 | INFO     | did not find any defunct processes belonging to 4048287
[2026-01-28 14:46:03] 2026-01-28 19:45:27,600 | INFO     | did not find any defunct processes belonging to 4048287
[2026-01-28 14:46:03] 2026-01-28 19:45:27,601 | INFO     | ready for new job
[2026-01-28 14:46:03] 2026-01-28 19:45:27,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 14:46:03] 2026-01-28 19:45:27,604 | INFO     | **************************************
[2026-01-28 14:46:03] 2026-01-28 19:45:27,604 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 14:46:03] 2026-01-28 19:45:27,604 | INFO     | **************************************
[2026-01-28 14:46:03] 2026-01-28 19:45:27,604 | INFO     | 
[2026-01-28 14:46:03] 2026-01-28 19:45:27,607 | INFO     | architecture information:
[2026-01-28 14:46:03] 2026-01-28 19:45:27,607 | INFO     | executing command: cat /etc/os-release
[2026-01-28 14:46:03] 2026-01-28 19:45:27,680 | INFO     | cat /etc/os-release:
[2026-01-28 14:46:03] NAME="CentOS Linux"
[2026-01-28 14:46:03] VERSION="7 (Core)"
[2026-01-28 14:46:03] ID="centos"
[2026-01-28 14:46:03] ID_LIKE="rhel fedora"
[2026-01-28 14:46:03] VERSION_ID="7"
[2026-01-28 14:46:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 14:46:03] ANSI_COLOR="0;31"
[2026-01-28 14:46:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 14:46:03] HOME_URL="https://www.centos.org/"
[2026-01-28 14:46:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 14:46:03] 
[2026-01-28 14:46:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 14:46:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 14:46:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 14:46:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 14:46:03] 
[2026-01-28 14:46:03] 2026-01-28 19:45:27,680 | INFO     | **************************************
[2026-01-28 14:46:03] 2026-01-28 19:45:28,184 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-28 14:46:03] 2026-01-28 19:45:28,397 | INFO     | sufficient remaining disk space (50445942784 B)
[2026-01-28 14:46:03] 2026-01-28 19:45:28,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 14:46:03] 2026-01-28 19:45:28,398 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 14:46:03] 2026-01-28 19:45:28,398 | INFO     | update_server=False
[2026-01-28 14:46:03] 2026-01-28 19:45:28,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 14:46:03] 2026-01-28 19:45:28,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 14:46:03] 2026-01-28 19:45:28,410 | INFO     | aborting loop
[2026-01-28 14:46:03] 2026-01-28 19:45:28,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 14:46:03] 2026-01-28 19:45:29,404 | INFO     | [job] retrieve thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:29,415 | INFO     | [job] job monitor thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:29,424 | INFO     | all data control threads have been joined
[2026-01-28 14:46:03] 2026-01-28 19:45:29,492 | INFO     | all job control threads have been joined
[2026-01-28 14:46:03] 2026-01-28 19:45:29,648 | INFO     | all payload control threads have been joined
[2026-01-28 14:46:03] 2026-01-28 19:45:29,675 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 14:46:03] 2026-01-28 19:45:29,844 | INFO     | [payload] validate_post thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,191 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 14:46:03] 2026-01-28 19:45:30,426 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,466 | INFO     | [data] control thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,498 | INFO     | [job] control thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,602 | INFO     | [data] copytool_out thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,655 | INFO     | [payload] control thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,681 | INFO     | [job] queue monitor thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,886 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,887 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,887 | INFO     | [job] validate thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,887 | INFO     | [data] copytool_in thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,888 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:30,891 | INFO     | [payload] failed_post thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:34,200 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 14:46:03] 2026-01-28 19:45:41,631 | INFO     | [monitor] cgroup control has ended
[2026-01-28 14:46:03] 2026-01-28 19:45:42,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140296179775296)>', '<ExcThread(monitor, started 140295828133632)>']
[2026-01-28 14:46:03] 2026-01-28 19:45:47,688 | INFO     | all workflow threads have been joined
[2026-01-28 14:46:03] 2026-01-28 19:45:47,688 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 14:46:03] 2026-01-28 19:45:47,688 | INFO     | traces error code: 0
[2026-01-28 14:46:03] 2026-01-28 19:45:47,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 14:46:03] 2026-01-28 19:46:01,125 | INFO     | PID=4040301 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 14:46:03] 2026-01-28 19:46:01,135 | INFO     | .. there are 19 such processes running
[2026-01-28 14:46:03] 2026-01-28 19:46:01,135 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 14:46:03] 2026-01-28 19:46:01,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 14:46:03] 2026-01-28 19:46:01,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 14:46:03] 2026-01-28 19:46:01,136 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 14:46:03] 2026-01-28 19:46:01,136 | INFO     | [monitor] control thread has ended
[2026-01-28 14:46:03] 2026-01-28 19:46:01,807 [wrapper] ==== pilot stdout END ====
[2026-01-28 14:46:03] 2026-01-28 19:46:01,822 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 14:46:03] 2026-01-28 19:46:01,859 [wrapper] pilotpid: 4040301
[2026-01-28 14:46:03] 2026-01-28 19:46:01,922 [wrapper] Pilot exit status: 0
[2026-01-28 14:46:03] 2026-01-28 19:46:02,197 [wrapper] pandaids: 6984546474 6984546474
[2026-01-28 14:46:03] 2026-01-28 19:46:02,777 [wrapper] cleanup supervisor_pilot  750846 4040303
[2026-01-28 14:46:03] 2026-01-28 19:46:02,828 [wrapper] Test setup, not cleaning
[2026-01-28 14:46:03] 2026-01-28 19:46:02,850 [wrapper] apfmon messages muted
[2026-01-28 14:46:03] 2026-01-28 19:46:02,869 [wrapper] ==== wrapper stdout END ====
[2026-01-28 14:46:03] 2026-01-28 19:46:02,889 [wrapper] ==== wrapper stderr END ====
[2026-01-28 14:46:03]  *** Error codes and diagnostics ***
[2026-01-28 14:46:03]     "exeErrorCode": 0,
[2026-01-28 14:46:03]     "exeErrorDiag": "",
[2026-01-28 14:46:03]     "pilotErrorCode": 0,
[2026-01-28 14:46:03]     "pilotErrorDiag": "",
[2026-01-28 14:46:03]  *** Listing of results directory ***
[2026-01-28 14:46:03] total 1167368
[2026-01-28 14:46:03] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas    584422 Jan 28 06:53 pilot3.tar.gz
[2026-01-28 14:46:03] -rwx------. 1 boincer umatlas     36322 Jan 28 06:54 runpilot2-wrapper.sh
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas      5111 Jan 28 06:54 queuedata.json
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas       100 Jan 28 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 14:46:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 28 09:21 run_atlas
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas       105 Jan 28 09:21 job.xml
[2026-01-28 14:46:03] -rw-r--r--. 3 boincer umatlas 502360853 Jan 28 09:21 EVNT.48317929._000085.pool.root.1
[2026-01-28 14:46:03] -rw-r--r--. 3 boincer umatlas 502360853 Jan 28 09:21 ATLAS.root_0
[2026-01-28 14:46:03] -rw-r--r--. 2 boincer umatlas     15845 Jan 28 09:21 start_atlas.sh
[2026-01-28 14:46:03] drwxrwx--x. 2 boincer umatlas      4096 Jan 28 09:21 shared
[2026-01-28 14:46:03] -rw-r--r--. 2 boincer umatlas    597759 Jan 28 09:21 input.tar.gz
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas         0 Jan 28 09:21 boinc_lockfile
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas      2509 Jan 28 09:47 pandaJob.out
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas        57 Jan 28 09:47 setup.sh.local
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas   1005192 Jan 28 09:48 agis_schedconf.cvmfs.json
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas       435 Jan 28 09:48 workernode_map.json
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas 181204070 Jan 28 14:43 HITS.48317931._003033.pool.root.1
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas       532 Jan 28 14:43 boinc_task_state.xml
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas      1045 Jan 28 14:45 memory_monitor_summary.json
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas   1516246 Jan 28 14:45 agis_ddmendpoints.agis.ALL.json
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas    537521 Jan 28 14:45 log.48317931._003033.job.log.tgz.1
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas        96 Jan 28 14:45 pilot_heartbeat.json
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas      6387 Jan 28 14:45 heartbeat.json
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas      6525 Jan 28 14:45 init_data.xml
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas      8192 Jan 28 14:45 boinc_mmap_file
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas        28 Jan 28 14:45 wrapper_checkpoint.txt
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas       823 Jan 28 14:46 pilotlog.txt
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas   2215061 Jan 28 14:46 log.48317931._003033.job.log.1
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas       357 Jan 28 14:46 output.list
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas       620 Jan 28 14:46 runtime_log
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas   2775040 Jan 28 14:46 result.tar.gz
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas      9427 Jan 28 14:46 runtime_log.err
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas       779 Jan 28 14:46 5W3NDmmIJ58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoCFKDmDPcxYn.diag
[2026-01-28 14:46:03] -rw-r--r--. 1 boincer umatlas     23439 Jan 28 14:46 stderr.txt
[2026-01-28 14:46:03] HITS file was successfully produced:
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas 181204070 Jan 28 14:43 shared/HITS.pool.root.1
[2026-01-28 14:46:03]  *** Contents of shared directory: ***
[2026-01-28 14:46:03] total 670868
[2026-01-28 14:46:03] -rw-r--r--. 3 boincer umatlas 502360853 Jan 28 09:21 ATLAS.root_0
[2026-01-28 14:46:03] -rw-r--r--. 2 boincer umatlas     15845 Jan 28 09:21 start_atlas.sh
[2026-01-28 14:46:03] -rw-r--r--. 2 boincer umatlas    597759 Jan 28 09:21 input.tar.gz
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas 181204070 Jan 28 14:43 HITS.pool.root.1
[2026-01-28 14:46:03] -rw-------. 1 boincer umatlas   2775040 Jan 28 14:46 result.tar.gz
14:46:04 (4032108): run_atlas exited; CPU time 80027.047664
14:46:04 (4032108): called boinc_finish(0)

</stderr_txt>
]]>

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