Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:08:40 (2374644): wrapper (7.7.26015): starting
13:08:40 (2374644): wrapper: running run_atlas (--nthreads 2)
[2026-01-28 13:08:40] Arguments: --nthreads 2
[2026-01-28 13:08:40] Threads: 2
[2026-01-28 13:08:40] Checking for CVMFS
[2026-01-28 13:08:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 13:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 13:08:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 13:08:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 13:08:41] 2.9.2.0 2374839 0 30068 155622 4 1 25579180 36864001 0 130560 0 0 0.000 1336 3988 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 13:08:41] CVMFS is ok
[2026-01-28 13:08:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 13:08:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 13:08:41] Further information can be found at the LHC@home message board.
[2026-01-28 13:08:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 13:08:41] Checking for apptainer binary...
[2026-01-28 13:08:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 13:08:41] Running /usr/bin/apptainer --version
[2026-01-28 13:08:41] apptainer version 1.4.1-1.1
[2026-01-28 13:08:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 13:08:42] thA334a
[2026-01-28 13:08:42] apptainer works
[2026-01-28 13:08:42] Set ATHENA_PROC_NUMBER=2
[2026-01-28 13:08:42] Set ATHENA_CORE_NUMBER=2
[2026-01-28 13:08:42] Starting ATLAS job with PandaID=6984546977
[2026-01-28 13:08:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 15:15:15]  *** The last 200 lines of the pilot log: ***
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | job 6984546977 has completed (purged errors)
[2026-01-28 15:15:15] 2026-01-28 14:14:51,908 | INFO     | overall cleanup function is called
[2026-01-28 15:15:15] 2026-01-28 14:14:52,915 | INFO     | --- collectZombieJob: --- 10, [2383309]
[2026-01-28 15:15:15] 2026-01-28 14:14:52,915 | INFO     | zombie collector waiting for pid 2383309
[2026-01-28 15:15:15] 2026-01-28 14:14:52,915 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 15:15:15] 2026-01-28 14:14:52,916 | INFO     | collected zombie processes
[2026-01-28 15:15:15] 2026-01-28 14:14:52,916 | INFO     | will attempt to kill all subprocesses of pid=2383309
[2026-01-28 15:15:15] 2026-01-28 14:14:52,946 | INFO     | process IDs to be killed: [2383309] (in reverse order)
[2026-01-28 15:15:15] 2026-01-28 14:14:52,967 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 15:15:15] 2026-01-28 14:14:52,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 15:15:15] 2026-01-28 14:14:52,968 | INFO     | did not find any defunct processes belonging to 2383309
[2026-01-28 15:15:15] 2026-01-28 14:14:52,968 | INFO     | did not find any defunct processes belonging to 2383309
[2026-01-28 15:15:15] 2026-01-28 14:14:52,968 | INFO     | ready for new job
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | **************************************
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | **************************************
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | 
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | architecture information:
[2026-01-28 15:15:15] 2026-01-28 14:14:52,969 | INFO     | executing command: cat /etc/os-release
[2026-01-28 15:15:15] 2026-01-28 14:14:52,978 | INFO     | cat /etc/os-release:
[2026-01-28 15:15:15] NAME="CentOS Linux"
[2026-01-28 15:15:15] VERSION="7 (Core)"
[2026-01-28 15:15:15] ID="centos"
[2026-01-28 15:15:15] ID_LIKE="rhel fedora"
[2026-01-28 15:15:15] VERSION_ID="7"
[2026-01-28 15:15:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 15:15:15] ANSI_COLOR="0;31"
[2026-01-28 15:15:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 15:15:15] HOME_URL="https://www.centos.org/"
[2026-01-28 15:15:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 15:15:15] 
[2026-01-28 15:15:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 15:15:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 15:15:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 15:15:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 15:15:15] 
[2026-01-28 15:15:15] 2026-01-28 14:14:52,978 | INFO     | **************************************
[2026-01-28 15:15:15] 2026-01-28 14:14:53,482 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | INFO     | sufficient remaining disk space (498517147648 B)
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | INFO     | update_server=False
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 15:15:15] 2026-01-28 14:14:53,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 15:15:15] 2026-01-28 14:14:53,839 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-28 15:15:15] 2026-01-28 14:14:53,840 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-28 15:15:15] 2026-01-28 14:14:53,840 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 15:15:15] 2026-01-28 14:14:53,840 | INFO     | will abort loop
[2026-01-28 15:15:15] 2026-01-28 14:14:54,109 | INFO     | all data control threads have been joined
[2026-01-28 15:15:15] 2026-01-28 14:14:54,211 | INFO     | all payload control threads have been joined
[2026-01-28 15:15:15] 2026-01-28 14:14:54,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 15:15:15] 2026-01-28 14:14:54,500 | INFO     | [job] retrieve thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:54,500 | INFO     | [job] queue monitor thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:54,846 | INFO     | [job] job monitor thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:54,861 | INFO     | all job control threads have been joined
[2026-01-28 15:15:15] 2026-01-28 14:14:54,881 | INFO     | [payload] validate_post thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:54,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 15:15:15] 2026-01-28 14:14:55,115 | INFO     | [data] control thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,217 | INFO     | [payload] control thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,560 | INFO     | [job] validate thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,713 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,716 | INFO     | [payload] failed_post thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,769 | INFO     | [data] copytool_in thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,866 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,867 | INFO     | [job] control thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:55,961 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:56,441 | INFO     | [data] copytool_out thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:14:58,967 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:15:03,862 | INFO     | job.realtimelogging is not enabled
[2026-01-28 15:15:15] 2026-01-28 14:15:04,868 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 15:15:15] 2026-01-28 14:15:09,579 | INFO     | [monitor] cgroup control has ended
[2026-01-28 15:15:15] 2026-01-28 14:15:09,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979276678976)>', '<ExcThread(monitor, started 139978411599616)>']
[2026-01-28 15:15:15] 2026-01-28 14:15:10,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 15:15:15] 2026-01-28 14:15:10,585 | INFO     | [monitor] control thread has ended
[2026-01-28 15:15:15] 2026-01-28 14:15:15,022 | INFO     | all workflow threads have been joined
[2026-01-28 15:15:15] 2026-01-28 14:15:15,023 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 15:15:15] 2026-01-28 14:15:15,023 | INFO     | traces error code: 0
[2026-01-28 15:15:15] 2026-01-28 14:15:15,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 15:15:15] 2026-01-28 14:15:15,062 [wrapper] ==== pilot stdout END ====
[2026-01-28 15:15:15] 2026-01-28 14:15:15,065 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 15:15:15] 2026-01-28 14:15:15,067 [wrapper] pilotpid: 2378897
[2026-01-28 15:15:15] 2026-01-28 14:15:15,070 [wrapper] Pilot exit status: 0
[2026-01-28 15:15:15] 2026-01-28 14:15:15,076 [wrapper] pandaids: 6984546977
[2026-01-28 15:15:15] 2026-01-28 14:15:15,088 [wrapper] cleanup supervisor_pilot 2388266 2378898
[2026-01-28 15:15:15] 2026-01-28 14:15:15,090 [wrapper] Test setup, not cleaning
[2026-01-28 15:15:15] 2026-01-28 14:15:15,092 [wrapper] apfmon messages muted
[2026-01-28 15:15:15] 2026-01-28 14:15:15,094 [wrapper] ==== wrapper stdout END ====
[2026-01-28 15:15:15] 2026-01-28 14:15:15,096 [wrapper] ==== wrapper stderr END ====
[2026-01-28 15:15:15]  *** Error codes and diagnostics ***
[2026-01-28 15:15:15]     "exeErrorCode": 0,
[2026-01-28 15:15:15]     "exeErrorDiag": "",
[2026-01-28 15:15:15]     "pilotErrorCode": 0,
[2026-01-28 15:15:15]     "pilotErrorDiag": "",
[2026-01-28 15:15:15]  *** Listing of results directory ***
[2026-01-28 15:15:15] total 672568
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc    584422 Jan 28 12:53 pilot3.tar.gz
[2026-01-28 15:15:15] -rwx------ 1 boinc boinc     36322 Jan 28 12:57 runpilot2-wrapper.sh
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc      5111 Jan 28 12:59 queuedata.json
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc       100 Jan 28 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 15:15:15] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 13:08 run_atlas
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc       105 Jan 28 13:08 job.xml
[2026-01-28 15:15:15] -rw-r--r-- 2 boinc boinc 495891871 Jan 28 13:08 EVNT.48317929._000090.pool.root.1
[2026-01-28 15:15:15] -rw-r--r-- 2 boinc boinc    597759 Jan 28 13:08 input.tar.gz
[2026-01-28 15:15:15] -rw-r--r-- 2 boinc boinc     15845 Jan 28 13:08 start_atlas.sh
[2026-01-28 15:15:15] drwxrwx--x 2 boinc boinc      4096 Jan 28 13:08 shared
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc         0 Jan 28 13:08 boinc_setup_complete
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc      6207 Jan 28 13:08 init_data.xml
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc         0 Jan 28 13:08 boinc_lockfile
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc      2509 Jan 28 13:08 pandaJob.out
[2026-01-28 15:15:15] -rw------- 1 boinc boinc   1005192 Jan 28 13:08 agis_schedconf.cvmfs.json
[2026-01-28 15:15:15] -rw------- 1 boinc boinc   1516246 Jan 28 13:08 agis_ddmendpoints.agis.ALL.json
[2026-01-28 15:15:15] -rw------- 1 boinc boinc       427 Jan 28 13:08 workernode_map.json
[2026-01-28 15:15:15] drwx------ 5 boinc boinc      4096 Jan 28 13:08 pilot3
[2026-01-28 15:15:15] -rw------- 1 boinc boinc 186109579 Jan 28 15:14 HITS.48317931._003283.pool.root.1
[2026-01-28 15:15:15] -rw------- 1 boinc boinc        95 Jan 28 15:14 pilot_heartbeat.json
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc       531 Jan 28 15:14 boinc_task_state.xml
[2026-01-28 15:15:15] -rw------- 1 boinc boinc      1013 Jan 28 15:14 memory_monitor_summary.json
[2026-01-28 15:15:15] -rw------- 1 boinc boinc    300973 Jan 28 15:14 log.48317931._003283.job.log.tgz.1
[2026-01-28 15:15:15] -rw------- 1 boinc boinc      6298 Jan 28 15:14 heartbeat.json
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc      8192 Jan 28 15:15 boinc_mmap_file
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc        27 Jan 28 15:15 wrapper_checkpoint.txt
[2026-01-28 15:15:15] -rw------- 1 boinc boinc      4810 Jan 28 15:15 pilotlog.txt
[2026-01-28 15:15:15] -rw------- 1 boinc boinc   1087529 Jan 28 15:15 log.48317931._003283.job.log.1
[2026-01-28 15:15:15] -rw------- 1 boinc boinc       357 Jan 28 15:15 output.list
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc       620 Jan 28 15:15 runtime_log
[2026-01-28 15:15:15] -rw------- 1 boinc boinc   1402880 Jan 28 15:15 result.tar.gz
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc      8901 Jan 28 15:15 runtime_log.err
[2026-01-28 15:15:15] -rw------- 1 boinc boinc       658 Jan 28 15:15 lwAMDmvLJ58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpMFKDmHWqVIo.diag
[2026-01-28 15:15:15] -rw-r--r-- 1 boinc boinc     12873 Jan 28 15:15 stderr.txt
[2026-01-28 15:15:15] HITS file was successfully produced:
[2026-01-28 15:15:15] -rw------- 1 boinc boinc 186109579 Jan 28 15:14 shared/HITS.pool.root.1
[2026-01-28 15:15:15]  *** Contents of shared directory: ***
[2026-01-28 15:15:15] total 668000
[2026-01-28 15:15:15] -rw-r--r-- 2 boinc boinc 495891871 Jan 28 13:08 ATLAS.root_0
[2026-01-28 15:15:15] -rw-r--r-- 2 boinc boinc    597759 Jan 28 13:08 input.tar.gz
[2026-01-28 15:15:15] -rw-r--r-- 2 boinc boinc     15845 Jan 28 13:08 start_atlas.sh
[2026-01-28 15:15:15] -rw------- 1 boinc boinc 186109579 Jan 28 15:14 HITS.pool.root.1
[2026-01-28 15:15:15] -rw------- 1 boinc boinc   1402880 Jan 28 15:15 result.tar.gz
15:15:16 (2374644): run_atlas exited; CPU time 14690.144593
15:15:16 (2374644): called boinc_finish(0)

</stderr_txt>
]]>

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