Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:57:29 (936446): wrapper (7.7.26015): starting
06:57:29 (936446): wrapper: running run_atlas (--nthreads 12)
[2026-01-28 06:57:29] Arguments: --nthreads 12
[2026-01-28 06:57:29] Threads: 12
[2026-01-28 06:57:29] Checking for CVMFS
[2026-01-28 06:57:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 06:57:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 06:57:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 06:57:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 06:57:31] 2.13.3.0 9330 120693 351220 155622 3 130 27996851 32935936 29212 16776704 0 558424936 99.704 420410380 32750 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-28 06:57:31] CVMFS is ok
[2026-01-28 06:57:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 06:57:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 06:57:31] Further information can be found at the LHC@home message board.
[2026-01-28 06:57:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 06:57:31] Checking for apptainer binary...
[2026-01-28 06:57:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 06:57:31] Running /usr/bin/apptainer --version
[2026-01-28 06:57:32] apptainer version 1.4.5-2.el9
[2026-01-28 06:57:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 06:57:32] c-5-5.aglt2.org
[2026-01-28 06:57:32] apptainer works
[2026-01-28 06:57:32] Set ATHENA_PROC_NUMBER=12
[2026-01-28 06:57:32] Set ATHENA_CORE_NUMBER=12
[2026-01-28 06:57:32] Starting ATLAS job with PandaID=6984554889
[2026-01-28 06:57:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 18:35:59]  *** The last 200 lines of the pilot log: ***
[2026-01-28 18:35:59] 2026-01-28 23:35:10,336 | INFO     | job 6984554889 has state=finished
[2026-01-28 18:35:59] 2026-01-28 23:35:10,336 | INFO     | preparing for final server update for job 6984554889 in state='finished'
[2026-01-28 18:35:59] 2026-01-28 23:35:10,337 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6984554889/jobReport.json
[2026-01-28 18:35:59] 2026-01-28 23:35:10,344 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-28 18:35:59] 2026-01-28 23:35:10,344 | INFO     | this job has now completed (state=finished)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,344 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,344 | INFO     | log transfer has been attempted: DONE
[2026-01-28 18:35:59] 2026-01-28 23:35:10,345 | INFO     | job 6984554889 has finished - writing final server update
[2026-01-28 18:35:59] 2026-01-28 23:35:10,345 | INFO     | total number of processed events: 400 (read)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,371 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6984554889/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,372 | INFO     | extracted standard info from prmon json
[2026-01-28 18:35:59] 2026-01-28 23:35:10,372 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 18:35:59] 2026-01-28 23:35:10,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 18:35:59] 2026-01-28 23:35:10,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 18:35:59] 2026-01-28 23:35:10,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 18:35:59] 2026-01-28 23:35:10,396 | INFO     | fitting pss+swap vs Time
[2026-01-28 18:35:59] 2026-01-28 23:35:10,397 | INFO     | sum of square deviations: 99667186785.61174
[2026-01-28 18:35:59] 2026-01-28 23:35:10,429 | INFO     | sum of deviations: -930056689382.4934
[2026-01-28 18:35:59] 2026-01-28 23:35:10,430 | INFO     | mean x: 1769622413.4510949
[2026-01-28 18:35:59] 2026-01-28 23:35:10,430 | INFO     | mean y: 3010864.791240876
[2026-01-28 18:35:59] 2026-01-28 23:35:10,430 | INFO     | intersect: 16516461443.582766
[2026-01-28 18:35:59] 2026-01-28 23:35:10,431 | INFO     | chi2: 4.574918999367602
[2026-01-28 18:35:59] 2026-01-28 23:35:10,436 | INFO     | sum of square deviations: 97500691569.58673
[2026-01-28 18:35:59] 2026-01-28 23:35:10,457 | INFO     | sum of deviations: -854008491325.1857
[2026-01-28 18:35:59] 2026-01-28 23:35:10,457 | INFO     | mean x: 1769622260.9544117
[2026-01-28 18:35:59] 2026-01-28 23:35:10,457 | INFO     | mean y: 3016197.961764706
[2026-01-28 18:35:59] 2026-01-28 23:35:10,457 | INFO     | intersect: 15503136381.361063
[2026-01-28 18:35:59] 2026-01-28 23:35:10,458 | INFO     | chi2: 3.868063976500027
[2026-01-28 18:35:59] 2026-01-28 23:35:10,458 | INFO     | current chi2=3.868063976500027 (change=15.450656568242739 %)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,458 | INFO     | right removable region: 679
[2026-01-28 18:35:59] 2026-01-28 23:35:10,467 | INFO     | sum of square deviations: 97500503079.58672
[2026-01-28 18:35:59] 2026-01-28 23:35:10,488 | INFO     | sum of deviations: -1119486853885.2544
[2026-01-28 18:35:59] 2026-01-28 23:35:10,488 | INFO     | mean x: 1769622565.9544117
[2026-01-28 18:35:59] 2026-01-28 23:35:10,488 | INFO     | mean y: 3024174.7014705883
[2026-01-28 18:35:59] 2026-01-28 23:35:10,488 | INFO     | intersect: 20321577785.72816
[2026-01-28 18:35:59] 2026-01-28 23:35:10,494 | INFO     | chi2: 2.232922994532874
[2026-01-28 18:35:59] 2026-01-28 23:35:10,494 | INFO     | current chi2=2.232922994532874 (change=51.19207586316754 %)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,495 | INFO     | sum of square deviations: 95365447873.5468
[2026-01-28 18:35:59] 2026-01-28 23:35:10,515 | INFO     | sum of deviations: -1167645672251.9644
[2026-01-28 18:35:59] 2026-01-28 23:35:10,515 | INFO     | mean x: 1769622718.4577777
[2026-01-28 18:35:59] 2026-01-28 23:35:10,515 | INFO     | mean y: 3027612.6503703706
[2026-01-28 18:35:59] 2026-01-28 23:35:10,515 | INFO     | intersect: 21670123555.67844
[2026-01-28 18:35:59] 2026-01-28 23:35:10,516 | INFO     | chi2: 1.982580266165138
[2026-01-28 18:35:59] 2026-01-28 23:35:10,517 | INFO     | current chi2=1.982580266165138 (change=11.211435816670772 %)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,517 | INFO     | left removable region: 20
[2026-01-28 18:35:59] 2026-01-28 23:35:10,518 | INFO     | sum of square deviations: 88743537113.76324
[2026-01-28 18:35:59] 2026-01-28 23:35:10,540 | INFO     | sum of deviations: -1093260047035.4702
[2026-01-28 18:35:59] 2026-01-28 23:35:10,540 | INFO     | mean x: 1769622840.461305
[2026-01-28 18:35:59] 2026-01-28 23:35:10,540 | INFO     | mean y: 3034168.942336874
[2026-01-28 18:35:59] 2026-01-28 23:35:10,541 | INFO     | intersect: 21803584526.96635
[2026-01-28 18:35:59] 2026-01-28 23:35:10,546 | INFO     | chi2: 1.170509675729861
[2026-01-28 18:35:59] 2026-01-28 23:35:10,546 | INFO     | current memory leak: -12.32 B/s (using 659 data points, chi2=1.17)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,547 | INFO     | could have reported an average CPU frequency of 2600 MHz (27 samples)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,547 | INFO     | ..............................
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . Timing measurements:
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . get job = 0 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . initial setup = 21 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . payload setup = 19 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . stage-in = 0 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . payload execution = 41763 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . stage-out = 4 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | . log creation = 0 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,548 | INFO     | ..............................
[2026-01-28 18:35:59] 2026-01-28 23:35:10,813 | INFO     | 
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | job summary report
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | --------------------------------------------------
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | PanDA job id: 6984554889
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | task id: 48317911
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | errors: (none)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 18:35:59] 2026-01-28 23:35:10,814 | INFO     | pilot state: finished 
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | transexitcode: 0
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | exeerrorcode: 0
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | exeerrordiag: 
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | exitcode: 0
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | exitmsg: OK
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | cpuconsumptiontime: 57888 s
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | nevents: 400
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | neventsw: 0
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | pid: 955396
[2026-01-28 18:35:59] 2026-01-28 23:35:10,815 | INFO     | pgrp: 955396
[2026-01-28 18:35:59] 2026-01-28 23:35:10,816 | INFO     | corecount: 12
[2026-01-28 18:35:59] 2026-01-28 23:35:10,816 | INFO     | event service: False
[2026-01-28 18:35:59] 2026-01-28 23:35:10,816 | INFO     | sizes: {0: 2283122, 1: 2283807, 2: 2284268, 3: 2284268, 41786: 2327141, 41792: 2336139, 41794: 2336323, 41795: 2336517}
[2026-01-28 18:35:59] 2026-01-28 23:35:10,816 | INFO     | --------------------------------------------------
[2026-01-28 18:35:59] 2026-01-28 23:35:10,816 | INFO     | 
[2026-01-28 18:35:59] 2026-01-28 23:35:10,816 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-28 18:35:59] 2026-01-28 23:35:10,980 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,983 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,983 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 18:35:59] 2026-01-28 23:35:10,983 | INFO     | job 6984554889 has completed (purged errors)
[2026-01-28 18:35:59] 2026-01-28 23:35:10,983 | INFO     | overall cleanup function is called
[2026-01-28 18:35:59] 2026-01-28 23:35:12,013 | INFO     | --- collectZombieJob: --- 10, [955396]
[2026-01-28 18:35:59] 2026-01-28 23:35:12,013 | INFO     | zombie collector waiting for pid 955396
[2026-01-28 18:35:59] 2026-01-28 23:35:12,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 18:35:59] 2026-01-28 23:35:12,013 | INFO     | collected zombie processes
[2026-01-28 18:35:59] 2026-01-28 23:35:12,013 | INFO     | will attempt to kill all subprocesses of pid=955396
[2026-01-28 18:35:59] 2026-01-28 23:35:13,281 | INFO     | PID=947393 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 18:35:59] 2026-01-28 23:35:13,281 | INFO     | .. there are 39 such processes running
[2026-01-28 18:35:59] 2026-01-28 23:35:13,611 | INFO     | process IDs to be killed: [955396] (in reverse order)
[2026-01-28 18:35:59] 2026-01-28 23:35:13,892 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 18:35:59] 2026-01-28 23:35:13,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 18:35:59] 2026-01-28 23:35:13,922 | INFO     | did not find any defunct processes belonging to 955396
[2026-01-28 18:35:59] 2026-01-28 23:35:13,959 | INFO     | did not find any defunct processes belonging to 955396
[2026-01-28 18:35:59] 2026-01-28 23:35:13,959 | INFO     | ready for new job
[2026-01-28 18:35:59] 2026-01-28 23:35:13,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 18:35:59] 2026-01-28 23:35:13,967 | INFO     | **************************************
[2026-01-28 18:35:59] 2026-01-28 23:35:13,968 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 18:35:59] 2026-01-28 23:35:13,968 | INFO     | **************************************
[2026-01-28 18:35:59] 2026-01-28 23:35:13,968 | INFO     | 
[2026-01-28 18:35:59] 2026-01-28 23:35:13,970 | INFO     | architecture information:
[2026-01-28 18:35:59] 2026-01-28 23:35:13,974 | INFO     | executing command: cat /etc/os-release
[2026-01-28 18:35:59] 2026-01-28 23:35:14,027 | INFO     | cat /etc/os-release:
[2026-01-28 18:35:59] NAME="CentOS Linux"
[2026-01-28 18:35:59] VERSION="7 (Core)"
[2026-01-28 18:35:59] ID="centos"
[2026-01-28 18:35:59] ID_LIKE="rhel fedora"
[2026-01-28 18:35:59] VERSION_ID="7"
[2026-01-28 18:35:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 18:35:59] ANSI_COLOR="0;31"
[2026-01-28 18:35:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 18:35:59] HOME_URL="https://www.centos.org/"
[2026-01-28 18:35:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 18:35:59] 
[2026-01-28 18:35:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 18:35:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 18:35:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 18:35:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 18:35:59] 
[2026-01-28 18:35:59] 2026-01-28 23:35:14,028 | INFO     | **************************************
[2026-01-28 18:35:59] 2026-01-28 23:35:14,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-28 18:35:59] 2026-01-28 23:35:14,590 | INFO     | sufficient remaining disk space (75368497152 B)
[2026-01-28 18:35:59] 2026-01-28 23:35:14,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 18:35:59] 2026-01-28 23:35:14,591 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 18:35:59] 2026-01-28 23:35:14,591 | INFO     | update_server=False
[2026-01-28 18:35:59] 2026-01-28 23:35:14,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 18:35:59] 2026-01-28 23:35:14,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:35:59] 2026-01-28 23:35:14,592 | INFO     | aborting loop
[2026-01-28 18:35:59] 2026-01-28 23:35:14,727 | INFO     | all data control threads have been joined
[2026-01-28 18:35:59] 2026-01-28 23:35:15,408 | INFO     | all payload control threads have been joined
[2026-01-28 18:35:59] 2026-01-28 23:35:15,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 18:35:59] 2026-01-28 23:35:15,597 | INFO     | [job] retrieve thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:15,603 | INFO     | [job] job monitor thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:15,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:35:59] 2026-01-28 23:35:15,733 | INFO     | [data] control thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:15,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 18:35:59] 2026-01-28 23:35:15,776 | INFO     | [payload] validate_post thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:15,997 | INFO     | all job control threads have been joined
[2026-01-28 18:35:59] 2026-01-28 23:35:16,130 | INFO     | [payload] failed_post thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,142 | INFO     | [job] validate thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,237 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,414 | INFO     | [payload] control thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,655 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,687 | INFO     | [data] copytool_in thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,723 | INFO     | [job] queue monitor thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,828 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:16,885 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:17,003 | INFO     | [job] control thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:17,498 | INFO     | [data] copytool_out thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:19,752 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 18:35:59] 2026-01-28 23:35:46,348 | INFO     | PID=947393 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-28 18:35:59] 2026-01-28 23:35:46,349 | INFO     | .. there are 39 such processes running
[2026-01-28 18:35:59] 2026-01-28 23:35:46,349 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 18:35:59] 2026-01-28 23:35:46,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 18:35:59] 2026-01-28 23:35:46,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 18:35:59] 2026-01-28 23:35:50,625 | INFO     | [monitor] cgroup control has ended
[2026-01-28 18:35:59] 2026-01-28 23:35:52,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139807703566144)>', '<ExcThread(monitor, started 139807057491712)>']
[2026-01-28 18:35:59] 2026-01-28 23:35:52,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 18:35:59] 2026-01-28 23:35:52,388 | INFO     | [monitor] control thread has ended
[2026-01-28 18:35:59] 2026-01-28 23:35:57,277 | INFO     | all workflow threads have been joined
[2026-01-28 18:35:59] 2026-01-28 23:35:57,277 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 18:35:59] 2026-01-28 23:35:57,278 | INFO     | traces error code: 0
[2026-01-28 18:35:59] 2026-01-28 23:35:57,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 18:35:59] 2026-01-28 23:35:57,719 [wrapper] ==== pilot stdout END ====
[2026-01-28 18:35:59] 2026-01-28 23:35:57,767 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 18:35:59] 2026-01-28 23:35:57,834 [wrapper] pilotpid: 947393
[2026-01-28 18:35:59] 2026-01-28 23:35:57,859 [wrapper] Pilot exit status: 0
[2026-01-28 18:35:59] 2026-01-28 23:35:58,037 [wrapper] pandaids: 6984554889
[2026-01-28 18:35:59] 2026-01-28 23:35:58,404 [wrapper] cleanup supervisor_pilot 3593322 947394
[2026-01-28 18:35:59] 2026-01-28 23:35:58,432 [wrapper] Test setup, not cleaning
[2026-01-28 18:35:59] 2026-01-28 23:35:58,457 [wrapper] apfmon messages muted
[2026-01-28 18:35:59] 2026-01-28 23:35:58,532 [wrapper] ==== wrapper stdout END ====
[2026-01-28 18:35:59] 2026-01-28 23:35:58,567 [wrapper] ==== wrapper stderr END ====
[2026-01-28 18:35:59]  *** Error codes and diagnostics ***
[2026-01-28 18:35:59]     "exeErrorCode": 0,
[2026-01-28 18:35:59]     "exeErrorDiag": "",
[2026-01-28 18:35:59]     "pilotErrorCode": 0,
[2026-01-28 18:35:59]     "pilotErrorDiag": "",
[2026-01-28 18:35:59]  *** Listing of results directory ***
[2026-01-28 18:35:59] total 726472
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas    584422 Jan 28 06:53 pilot3.tar.gz
[2026-01-28 18:35:59] -rwx------. 1 boincer umatlas     36322 Jan 28 06:53 runpilot2-wrapper.sh
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas      5111 Jan 28 06:54 queuedata.json
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas       100 Jan 28 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 18:35:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 28 06:57 run_atlas
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas       105 Jan 28 06:57 job.xml
[2026-01-28 18:35:59] -rw-r--r--. 2 boincer umatlas 529369112 Jan 28 06:57 EVNT.48317909._000058.pool.root.1
[2026-01-28 18:35:59] -rw-r--r--. 2 boincer umatlas     15845 Jan 28 06:57 start_atlas.sh
[2026-01-28 18:35:59] drwxrwx--x. 2 boincer umatlas      4096 Jan 28 06:57 shared
[2026-01-28 18:35:59] -rw-r--r--. 2 boincer umatlas    597756 Jan 28 06:57 input.tar.gz
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas         0 Jan 28 06:57 boinc_lockfile
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas      2501 Jan 28 06:57 pandaJob.out
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas        57 Jan 28 06:57 setup.sh.local
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas   1005192 Jan 28 06:58 agis_schedconf.cvmfs.json
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas       430 Jan 28 06:58 workernode_map.json
[2026-01-28 18:35:59] drwx------. 5 boincer umatlas      4096 Jan 28 06:58 pilot3
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas      6659 Jan 28 18:31 init_data.xml
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas 198688162 Jan 28 18:33 HITS.48317911._002713.pool.root.1
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas       531 Jan 28 18:34 boinc_task_state.xml
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas      1050 Jan 28 18:34 memory_monitor_summary.json
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas        95 Jan 28 18:34 pilot_heartbeat.json
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas   1516246 Jan 28 18:35 agis_ddmendpoints.agis.ALL.json
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas    894440 Jan 28 18:35 log.48317911._002713.job.log.tgz.1
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas      6396 Jan 28 18:35 heartbeat.json
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas        28 Jan 28 18:35 wrapper_checkpoint.txt
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas      8192 Jan 28 18:35 boinc_mmap_file
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas      4819 Jan 28 18:35 pilotlog.txt
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas   5057121 Jan 28 18:35 log.48317911._002713.job.log.1
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas       357 Jan 28 18:35 output.list
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas       620 Jan 28 18:35 runtime_log
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas   5969920 Jan 28 18:35 result.tar.gz
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas       657 Jan 28 18:35 xvMMDmbIJ58n9Rq4apOajLDm4fhM0noT9bVooX4SDmhCFKDm01dx0n.diag
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas      9329 Jan 28 18:35 runtime_log.err
[2026-01-28 18:35:59] -rw-r--r--. 1 boincer umatlas     21410 Jan 28 18:35 stderr.txt
[2026-01-28 18:35:59] HITS file was successfully produced:
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas 198688162 Jan 28 18:33 shared/HITS.pool.root.1
[2026-01-28 18:35:59]  *** Contents of shared directory: ***
[2026-01-28 18:35:59] total 717436
[2026-01-28 18:35:59] -rw-r--r--. 2 boincer umatlas 529369112 Jan 28 06:57 ATLAS.root_0
[2026-01-28 18:35:59] -rw-r--r--. 2 boincer umatlas     15845 Jan 28 06:57 start_atlas.sh
[2026-01-28 18:35:59] -rw-r--r--. 2 boincer umatlas    597756 Jan 28 06:57 input.tar.gz
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas 198688162 Jan 28 18:33 HITS.pool.root.1
[2026-01-28 18:35:59] -rw-------. 1 boincer umatlas   5969920 Jan 28 18:35 result.tar.gz
18:36:00 (936446): run_atlas exited; CPU time 59990.365313
18:36:00 (936446): called boinc_finish(0)

</stderr_txt>
]]>

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