Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:31:57 (3991542): wrapper (7.7.26015): starting
07:31:57 (3991542): wrapper: running run_atlas (--nthreads 3)
[2026-01-28 07:31:57] Arguments: --nthreads 3
[2026-01-28 07:31:57] Threads: 3
[2026-01-28 07:31:57] Checking for CVMFS
[2026-01-28 07:31:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 07:31:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 07:31:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 07:31:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 07:31:59] 2.9.2.0 3991738 0 30052 155614 4 1 24337488 36864000 0 130560 0 0 0.000 1336 1507 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 07:31:59] CVMFS is ok
[2026-01-28 07:31:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 07:31:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 07:31:59] Further information can be found at the LHC@home message board.
[2026-01-28 07:31:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 07:31:59] Checking for apptainer binary...
[2026-01-28 07:31:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 07:31:59] Running /usr/bin/apptainer --version
[2026-01-28 07:31:59] apptainer version 1.4.1-1.1
[2026-01-28 07:31:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 07:31:59] magicA246a
[2026-01-28 07:31:59] apptainer works
[2026-01-28 07:32:00] Set ATHENA_PROC_NUMBER=3
[2026-01-28 07:32:00] Set ATHENA_CORE_NUMBER=3
[2026-01-28 07:32:00] Starting ATLAS job with PandaID=6976756369
[2026-01-28 07:32:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 09:17:24]  *** The last 200 lines of the pilot log: ***
[2026-01-28 09:17:24] 2026-01-28 08:16:52,156 | INFO     | zombie collector waiting for pid 4000256
[2026-01-28 09:17:24] 2026-01-28 08:16:52,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 09:17:24] 2026-01-28 08:16:52,156 | INFO     | collected zombie processes
[2026-01-28 09:17:24] 2026-01-28 08:16:52,156 | INFO     | will attempt to kill all subprocesses of pid=4000256
[2026-01-28 09:17:24] 2026-01-28 08:16:52,213 | INFO     | process IDs to be killed: [4000256] (in reverse order)
[2026-01-28 09:17:24] 2026-01-28 08:16:52,242 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 09:17:24] 2026-01-28 08:16:52,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 09:17:24] 2026-01-28 08:16:52,245 | INFO     | did not find any defunct processes belonging to 4000256
[2026-01-28 09:17:24] 2026-01-28 08:16:52,246 | INFO     | did not find any defunct processes belonging to 4000256
[2026-01-28 09:17:24] 2026-01-28 08:16:52,246 | INFO     | ready for new job
[2026-01-28 09:17:24] 2026-01-28 08:16:52,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 09:17:24] 2026-01-28 08:16:52,247 | INFO     | **************************************
[2026-01-28 09:17:24] 2026-01-28 08:16:52,247 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 09:17:24] 2026-01-28 08:16:52,247 | INFO     | **************************************
[2026-01-28 09:17:24] 2026-01-28 08:16:52,247 | INFO     | 
[2026-01-28 09:17:24] 2026-01-28 08:16:52,247 | INFO     | architecture information:
[2026-01-28 09:17:24] 2026-01-28 08:16:52,247 | INFO     | executing command: cat /etc/os-release
[2026-01-28 09:17:24] 2026-01-28 08:16:52,256 | INFO     | cat /etc/os-release:
[2026-01-28 09:17:24] NAME="CentOS Linux"
[2026-01-28 09:17:24] VERSION="7 (Core)"
[2026-01-28 09:17:24] ID="centos"
[2026-01-28 09:17:24] ID_LIKE="rhel fedora"
[2026-01-28 09:17:24] VERSION_ID="7"
[2026-01-28 09:17:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 09:17:24] ANSI_COLOR="0;31"
[2026-01-28 09:17:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 09:17:24] HOME_URL="https://www.centos.org/"
[2026-01-28 09:17:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 09:17:24] 
[2026-01-28 09:17:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 09:17:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 09:17:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 09:17:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 09:17:24] 
[2026-01-28 09:17:24] 2026-01-28 08:16:52,257 | INFO     | **************************************
[2026-01-28 09:17:24] 2026-01-28 08:16:52,760 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 09:17:24] 2026-01-28 08:16:52,771 | INFO     | sufficient remaining disk space (281603473408 B)
[2026-01-28 09:17:24] 2026-01-28 08:16:52,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 09:17:24] 2026-01-28 08:16:52,772 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 09:17:24] 2026-01-28 08:16:52,772 | INFO     | update_server=False
[2026-01-28 09:17:24] 2026-01-28 08:16:52,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 09:17:24] 2026-01-28 08:16:52,772 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 09:17:24] 2026-01-28 08:16:52,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 09:17:24] 2026-01-28 08:16:52,957 | INFO     | all data control threads have been joined
[2026-01-28 09:17:24] 2026-01-28 08:16:53,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 09:17:24] 2026-01-28 08:16:53,338 | INFO     | all payload control threads have been joined
[2026-01-28 09:17:24] 2026-01-28 08:16:53,776 | INFO     | [job] retrieve thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:53,777 | INFO     | [job] queue monitor thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:53,896 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:53,962 | INFO     | [data] control thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,123 | INFO     | [payload] validate_post thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,134 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,266 | INFO     | [payload] failed_post thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,343 | INFO     | [payload] control thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,438 | INFO     | all job control threads have been joined
[2026-01-28 09:17:24] 2026-01-28 08:16:54,577 | INFO     | [job] validate thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,699 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,699 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:54,825 | INFO     | [data] copytool_in thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:55,225 | INFO     | [data] copytool_out thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:55,443 | INFO     | [job] control thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:56,626 | WARNING  | process 4000256 can no longer be monitored (due to stat problems) - aborting
[2026-01-28 09:17:24] 2026-01-28 08:16:56,665 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 09:17:24] 2026-01-28 08:16:56,715 | INFO     | number of running child processes to parent process 4000256: 1
[2026-01-28 09:17:24] 2026-01-28 08:16:56,715 | INFO     | maximum number of monitored processes: 6
[2026-01-28 09:17:24] 2026-01-28 08:16:56,715 | INFO     | aborting job monitoring since job object (job id=6976756369) has expired
[2026-01-28 09:17:24] 2026-01-28 08:16:56,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 09:17:24] 2026-01-28 08:16:56,715 | INFO     | will abort loop
[2026-01-28 09:17:24] 2026-01-28 08:16:56,778 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:16:57,721 | INFO     | [job] job monitor thread has finished
[2026-01-28 09:17:24] 2026-01-28 08:17:07,956 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-01-28 09:17:24] 2026-01-28 08:17:18,311 | INFO     | [monitor] cgroup control has ended
[2026-01-28 09:17:24] 2026-01-28 08:17:19,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697908836160)>', '<ExcThread(monitor, started 139697418393344)>']
[2026-01-28 09:17:24] 2026-01-28 08:17:22,886 | INFO     | PID=3995826 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 09:17:24] 2026-01-28 08:17:22,886 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 09:17:24] 2026-01-28 08:17:22,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 09:17:24] 2026-01-28 08:17:22,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 09:17:24] 2026-01-28 08:17:22,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 09:17:24] 2026-01-28 08:17:22,886 | INFO     | [monitor] control thread has ended
[2026-01-28 09:17:24] 2026-01-28 08:17:24,407 | INFO     | all workflow threads have been joined
[2026-01-28 09:17:24] 2026-01-28 08:17:24,407 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 09:17:24] 2026-01-28 08:17:24,408 | INFO     | traces error code: 0
[2026-01-28 09:17:24] 2026-01-28 08:17:24,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 09:17:24] 2026-01-28 08:17:24,461 [wrapper] ==== pilot stdout END ====
[2026-01-28 09:17:24] 2026-01-28 08:17:24,463 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 09:17:24] 2026-01-28 08:17:24,465 [wrapper] pilotpid: 3995826
[2026-01-28 09:17:24] 2026-01-28 08:17:24,468 [wrapper] Pilot exit status: 0
[2026-01-28 09:17:24] 2026-01-28 08:17:24,475 [wrapper] pandaids: 6976756369
[2026-01-28 09:17:24] 2026-01-28 08:17:24,495 [wrapper] cleanup supervisor_pilot 4007333 3995827
[2026-01-28 09:17:24] 2026-01-28 08:17:24,498 [wrapper] Test setup, not cleaning
[2026-01-28 09:17:24] 2026-01-28 08:17:24,500 [wrapper] apfmon messages muted
[2026-01-28 09:17:24] 2026-01-28 08:17:24,502 [wrapper] ==== wrapper stdout END ====
[2026-01-28 09:17:24] 2026-01-28 08:17:24,505 [wrapper] ==== wrapper stderr END ====
[2026-01-28 09:17:24]  *** Error codes and diagnostics ***
[2026-01-28 09:17:24]     "exeErrorCode": 0,
[2026-01-28 09:17:24]     "exeErrorDiag": "",
[2026-01-28 09:17:24]     "pilotErrorCode": 0,
[2026-01-28 09:17:24]     "pilotErrorDiag": "",
[2026-01-28 09:17:24]  *** Listing of results directory ***
[2026-01-28 09:17:24] total 415552
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc      5111 Jan 20 19:34 queuedata.json
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc    584422 Jan 20 19:34 pilot3.tar.gz
[2026-01-28 09:17:24] -rwx------ 1 boinc boinc     36322 Jan 20 19:34 runpilot2-wrapper.sh
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc       100 Jan 28 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 09:17:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 07:31 run_atlas
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc       105 Jan 28 07:31 job.xml
[2026-01-28 09:17:24] -rw-r--r-- 2 boinc boinc 247662432 Jan 28 07:31 EVNT.48298645._000004.pool.root.1
[2026-01-28 09:17:24] -rw-r--r-- 2 boinc boinc    597770 Jan 28 07:31 input.tar.gz
[2026-01-28 09:17:24] -rw-r--r-- 2 boinc boinc     15845 Jan 28 07:31 start_atlas.sh
[2026-01-28 09:17:24] drwxrwx--x 2 boinc boinc      4096 Jan 28 07:31 shared
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc         0 Jan 28 07:31 boinc_setup_complete
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc      6447 Jan 28 07:31 init_data.xml
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc         0 Jan 28 07:31 boinc_lockfile
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc      2605 Jan 28 07:31 pandaJob.out
[2026-01-28 09:17:24] -rw------- 1 boinc boinc   1004497 Jan 28 07:32 agis_schedconf.cvmfs.json
[2026-01-28 09:17:24] -rw------- 1 boinc boinc   1516246 Jan 28 07:32 agis_ddmendpoints.agis.ALL.json
[2026-01-28 09:17:24] -rw------- 1 boinc boinc       420 Jan 28 07:32 workernode_map.json
[2026-01-28 09:17:24] drwx------ 5 boinc boinc      4096 Jan 28 07:32 pilot3
[2026-01-28 09:17:24] -rw------- 1 boinc boinc 171549977 Jan 28 09:16 HITS.48298649._000097.pool.root.1
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc       529 Jan 28 09:16 boinc_task_state.xml
[2026-01-28 09:17:24] -rw------- 1 boinc boinc        95 Jan 28 09:16 pilot_heartbeat.json
[2026-01-28 09:17:24] -rw------- 1 boinc boinc      1014 Jan 28 09:16 memory_monitor_summary.json
[2026-01-28 09:17:24] -rw------- 1 boinc boinc    283902 Jan 28 09:16 log.48298649._000097.job.log.tgz.1
[2026-01-28 09:17:24] -rw------- 1 boinc boinc      6289 Jan 28 09:16 heartbeat.json
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc        27 Jan 28 09:17 wrapper_checkpoint.txt
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc      8192 Jan 28 09:17 boinc_mmap_file
[2026-01-28 09:17:24] -rw------- 1 boinc boinc      5272 Jan 28 09:17 pilotlog.txt
[2026-01-28 09:17:24] -rw------- 1 boinc boinc    909112 Jan 28 09:17 log.48298649._000097.job.log.1
[2026-01-28 09:17:24] -rw------- 1 boinc boinc       357 Jan 28 09:17 output.list
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc       620 Jan 28 09:17 runtime_log
[2026-01-28 09:17:24] -rw------- 1 boinc boinc   1208320 Jan 28 09:17 result.tar.gz
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc      8916 Jan 28 09:17 runtime_log.err
[2026-01-28 09:17:24] -rw------- 1 boinc boinc       661 Jan 28 09:17 8LfLDmDkV28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm88vKDmfswBjn.diag
[2026-01-28 09:17:24] -rw-r--r-- 1 boinc boinc     11236 Jan 28 09:17 stderr.txt
[2026-01-28 09:17:24] HITS file was successfully produced:
[2026-01-28 09:17:24] -rw------- 1 boinc boinc 171549977 Jan 28 09:16 shared/HITS.pool.root.1
[2026-01-28 09:17:24]  *** Contents of shared directory: ***
[2026-01-28 09:17:24] total 411180
[2026-01-28 09:17:24] -rw-r--r-- 2 boinc boinc 247662432 Jan 28 07:31 ATLAS.root_0
[2026-01-28 09:17:24] -rw-r--r-- 2 boinc boinc    597770 Jan 28 07:31 input.tar.gz
[2026-01-28 09:17:24] -rw-r--r-- 2 boinc boinc     15845 Jan 28 07:31 start_atlas.sh
[2026-01-28 09:17:24] -rw------- 1 boinc boinc 171549977 Jan 28 09:16 HITS.pool.root.1
[2026-01-28 09:17:24] -rw------- 1 boinc boinc   1208320 Jan 28 09:17 result.tar.gz
09:17:25 (3991542): run_atlas exited; CPU time 18111.542323
09:17:25 (3991542): called boinc_finish(0)

</stderr_txt>
]]>

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