Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:57:00 (2010372): wrapper (7.7.26015): starting
18:57:00 (2010372): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 18:57:00] Arguments: --nthreads 8
[2026-01-27 18:57:00] Threads: 8
[2026-01-27 18:57:00] Checking for CVMFS
[2026-01-27 18:57:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 18:57:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 18:57:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 18:57:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 18:57:00] 2.13.3.0 8961 49524 242276 155604 2 72 28443388 40960001 10760 16776704 0 40169651 99.599 41626168 42346 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 18:57:00] CVMFS is ok
[2026-01-27 18:57:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 18:57:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 18:57:00] Further information can be found at the LHC@home message board.
[2026-01-27 18:57:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 18:57:00] Checking for apptainer binary...
[2026-01-27 18:57:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 18:57:00] Running /usr/bin/apptainer --version
[2026-01-27 18:57:00] apptainer version 1.4.5-2.el9
[2026-01-27 18:57:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 18:57:00] c-210-35-1.aglt2.org
[2026-01-27 18:57:00] apptainer works
[2026-01-27 18:57:01] Set ATHENA_PROC_NUMBER=8
[2026-01-27 18:57:01] Set ATHENA_CORE_NUMBER=8
[2026-01-27 18:57:01] Starting ATLAS job with PandaID=6976809856
[2026-01-27 18:57:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 20:28:29]  *** The last 200 lines of the pilot log: ***
[2026-01-27 20:28:29]  status=None
[2026-01-27 20:28:29]  status_code=0
[2026-01-27 20:28:29]  storage_token=
[2026-01-27 20:28:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6976809856/log.48299565._000331.job.log.tgz.1
[2026-01-27 20:28:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/9a/log.48299565._000331.job.log.tgz.1
[2026-01-27 20:28:29]  workdir=None
[2026-01-27 20:28:29] ]
[2026-01-27 20:28:29] 2026-01-28 01:27:46,978 | INFO     | transferring file log.48299565._000331.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6976809856/log.48299565._000331.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-27 20:28:29] 2026-01-28 01:27:46,979 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6976809856/log.48299565._000331.job.log.tgz.1 /tmp/boinchome/slots/0/log.48299565._000331.job
[2026-01-27 20:28:29] 2026-01-28 01:27:47,003 | INFO     | adding to output.list: log.48299565._000331.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/9a/log.48299565._000331.job.log.tg
[2026-01-27 20:28:29] 2026-01-28 01:27:47,004 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 20:28:29] 2026-01-28 01:27:47,004 | INFO     | summary of transferred files:
[2026-01-27 20:28:29] 2026-01-28 01:27:47,004 | INFO     |  -- lfn=log.48299565._000331.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 20:28:29] 2026-01-28 01:27:47,004 | INFO     | stage-out finished correctly
[2026-01-27 20:28:29] 2026-01-28 01:27:48,218 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 20:28:29] 2026-01-28 01:27:48,446 | INFO     | time since job start (5434s) is within the limit (349056.0s)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,453 | INFO     | time since job start (5436s) is within the limit (349056.0s)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,499 | INFO     | job 6976809856 has state=finished
[2026-01-27 20:28:29] 2026-01-28 01:27:50,499 | INFO     | preparing for final server update for job 6976809856 in state='finished'
[2026-01-27 20:28:29] 2026-01-28 01:27:50,499 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6976809856/jobReport.json
[2026-01-27 20:28:29] 2026-01-28 01:27:50,501 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-27 20:28:29] 2026-01-28 01:27:50,502 | INFO     | this job has now completed (state=finished)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,502 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,502 | INFO     | log transfer has been attempted: DONE
[2026-01-27 20:28:29] 2026-01-28 01:27:50,502 | INFO     | job 6976809856 has finished - writing final server update
[2026-01-27 20:28:29] 2026-01-28 01:27:50,502 | INFO     | total number of processed events: 400 (read)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,523 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6976809856/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,524 | INFO     | extracted standard info from prmon json
[2026-01-27 20:28:29] 2026-01-28 01:27:50,524 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 20:28:29] 2026-01-28 01:27:50,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 20:28:29] 2026-01-28 01:27:50,528 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 20:28:29] 2026-01-28 01:27:50,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 20:28:29] 2026-01-28 01:27:50,530 | INFO     | fitting pss+swap vs Time
[2026-01-27 20:28:29] 2026-01-28 01:27:50,530 | INFO     | sum of square deviations: 170946980.4878044
[2026-01-27 20:28:29] 2026-01-28 01:27:50,530 | INFO     | sum of deviations: -8628023530.439026
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | mean x: 1769561030.512195
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | mean y: 2623100.43902439
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | intersect: 89315778362.02832
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | chi2: 0.14113505489220374
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | current memory leak: -50.47 B/s (using 82 data points, chi2=0.14)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | could have reported an average CPU frequency of 3014 MHz (7 samples)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,531 | INFO     | ..............................
[2026-01-27 20:28:29] 2026-01-28 01:27:50,532 | INFO     | . Timing measurements:
[2026-01-27 20:28:29] 2026-01-28 01:27:50,532 | INFO     | . get job = 0 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,532 | INFO     | . initial setup = 5 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,532 | INFO     | . payload setup = 5 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,536 | INFO     | . stage-in = 0 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,536 | INFO     | . payload execution = 5412 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,536 | INFO     | . stage-out = 0 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,536 | INFO     | . log creation = 0 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,536 | INFO     | ..............................
[2026-01-27 20:28:29] 2026-01-28 01:27:50,787 | INFO     | 
[2026-01-27 20:28:29] 2026-01-28 01:27:50,787 | INFO     | job summary report
[2026-01-27 20:28:29] 2026-01-28 01:27:50,787 | INFO     | --------------------------------------------------
[2026-01-27 20:28:29] 2026-01-28 01:27:50,787 | INFO     | PanDA job id: 6976809856
[2026-01-27 20:28:29] 2026-01-28 01:27:50,787 | INFO     | task id: 48299565
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | errors: (none)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | pilot state: finished 
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | transexitcode: 0
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | exeerrorcode: 0
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | exeerrordiag: 
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | exitcode: 0
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | exitmsg: OK
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | cpuconsumptiontime: 38352 s
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | nevents: 400
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | neventsw: 0
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | pid: 2018578
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | pgrp: 2018578
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | corecount: 8
[2026-01-27 20:28:29] 2026-01-28 01:27:50,788 | INFO     | event service: False
[2026-01-27 20:28:29] 2026-01-28 01:27:50,789 | INFO     | sizes: {0: 2284361, 11: 2284361, 5420: 2310985, 5421: 2320038, 5423: 2320038, 5425: 2320232}
[2026-01-27 20:28:29] 2026-01-28 01:27:50,789 | INFO     | --------------------------------------------------
[2026-01-27 20:28:29] 2026-01-28 01:27:50,789 | INFO     | 
[2026-01-27 20:28:29] 2026-01-28 01:27:50,789 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-27 20:28:29] 2026-01-28 01:27:50,812 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,812 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,812 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,813 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,814 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,814 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 20:28:29] 2026-01-28 01:27:50,814 | INFO     | job 6976809856 has completed (purged errors)
[2026-01-27 20:28:29] 2026-01-28 01:27:50,814 | INFO     | overall cleanup function is called
[2026-01-27 20:28:29] 2026-01-28 01:27:51,465 | WARNING  | process 2018578 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 20:28:29] 2026-01-28 01:27:51,616 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 20:28:29] 2026-01-28 01:27:51,617 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 20:28:29] 2026-01-28 01:27:51,618 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 20:28:29] 2026-01-28 01:27:51,618 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 20:28:29] 2026-01-28 01:27:51,618 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-6976809856/payload.stdout) since it has not been created yet
[2026-01-27 20:28:29] 2026-01-28 01:27:51,618 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-27 20:28:29] 2026-01-28 01:27:51,686 | INFO     | sufficient remaining disk space (75451334656 B)
[2026-01-27 20:28:29] 2026-01-28 01:27:51,687 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 20:28:29] 2026-01-28 01:27:51,687 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6976809856/HITS.48299565._000331.pool.root.1 since it does not exist
[2026-01-27 20:28:29] 2026-01-28 01:27:51,822 | INFO     | --- collectZombieJob: --- 10, [2018578]
[2026-01-27 20:28:29] 2026-01-28 01:27:51,822 | INFO     | zombie collector waiting for pid 2018578
[2026-01-27 20:28:29] 2026-01-28 01:27:51,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 20:28:29] 2026-01-28 01:27:51,822 | INFO     | collected zombie processes
[2026-01-27 20:28:29] 2026-01-28 01:27:51,822 | INFO     | will attempt to kill all subprocesses of pid=2018578
[2026-01-27 20:28:29] 2026-01-28 01:27:52,120 | INFO     | number of running child processes to parent process 2018578: 1
[2026-01-27 20:28:29] 2026-01-28 01:27:52,121 | INFO     | maximum number of monitored processes: 6
[2026-01-27 20:28:29] 2026-01-28 01:27:52,121 | INFO     | aborting job monitoring since job object (job id=6976809856) has expired
[2026-01-27 20:28:29] 2026-01-28 01:27:52,237 | INFO     | process IDs to be killed: [2018578] (in reverse order)
[2026-01-27 20:28:29] 2026-01-28 01:27:52,320 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 20:28:29] 2026-01-28 01:27:52,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 20:28:29] 2026-01-28 01:27:52,329 | INFO     | did not find any defunct processes belonging to 2018578
[2026-01-27 20:28:29] 2026-01-28 01:27:52,338 | INFO     | did not find any defunct processes belonging to 2018578
[2026-01-27 20:28:29] 2026-01-28 01:27:52,339 | INFO     | ready for new job
[2026-01-27 20:28:29] 2026-01-28 01:27:52,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 20:28:29] 2026-01-28 01:27:52,341 | INFO     | **************************************
[2026-01-27 20:28:29] 2026-01-28 01:27:52,341 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 20:28:29] 2026-01-28 01:27:52,341 | INFO     | **************************************
[2026-01-27 20:28:29] 2026-01-28 01:27:52,341 | INFO     | 
[2026-01-27 20:28:29] 2026-01-28 01:27:52,344 | INFO     | architecture information:
[2026-01-27 20:28:29] 2026-01-28 01:27:52,345 | INFO     | executing command: cat /etc/os-release
[2026-01-27 20:28:29] 2026-01-28 01:27:52,386 | INFO     | cat /etc/os-release:
[2026-01-27 20:28:29] NAME="CentOS Linux"
[2026-01-27 20:28:29] VERSION="7 (Core)"
[2026-01-27 20:28:29] ID="centos"
[2026-01-27 20:28:29] ID_LIKE="rhel fedora"
[2026-01-27 20:28:29] VERSION_ID="7"
[2026-01-27 20:28:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 20:28:29] ANSI_COLOR="0;31"
[2026-01-27 20:28:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 20:28:29] HOME_URL="https://www.centos.org/"
[2026-01-27 20:28:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 20:28:29] 
[2026-01-27 20:28:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 20:28:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 20:28:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 20:28:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 20:28:29] 
[2026-01-27 20:28:29] 2026-01-28 01:27:52,386 | INFO     | **************************************
[2026-01-27 20:28:29] 2026-01-28 01:27:52,890 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-27 20:28:29] 2026-01-28 01:27:52,910 | INFO     | sufficient remaining disk space (75452383232 B)
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | INFO     | update_server=False
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | INFO     | will abort loop
[2026-01-27 20:28:29] 2026-01-28 01:27:52,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 20:28:29] 2026-01-28 01:27:53,547 | INFO     | all job control threads have been joined
[2026-01-27 20:28:29] 2026-01-28 01:27:53,632 | INFO     | all payload control threads have been joined
[2026-01-27 20:28:29] 2026-01-28 01:27:53,696 | INFO     | all data control threads have been joined
[2026-01-27 20:28:29] 2026-01-28 01:27:53,917 | INFO     | [job] retrieve thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:53,917 | INFO     | [job] job monitor thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,341 | INFO     | [payload] failed_post thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 20:28:29] 2026-01-28 01:27:54,553 | INFO     | [job] control thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,636 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,638 | INFO     | [payload] control thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,702 | INFO     | [data] control thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,918 | INFO     | [data] copytool_out thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,939 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,956 | INFO     | [job] validate thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:54,966 | INFO     | [data] copytool_in thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:55,238 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:55,295 | INFO     | [payload] validate_post thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:55,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 20:28:29] 2026-01-28 01:27:56,679 | INFO     | [job] queue monitor thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:27:58,413 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:28:03,727 | INFO     | job.realtimelogging is not enabled
[2026-01-27 20:28:29] 2026-01-28 01:28:04,733 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 20:28:29] 2026-01-28 01:28:22,981 | INFO     | [monitor] cgroup control has ended
[2026-01-27 20:28:29] 2026-01-28 01:28:23,909 | INFO     | PID=2014194 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 20:28:29] 2026-01-28 01:28:23,909 | INFO     | .. there are 8 such processes running
[2026-01-27 20:28:29] 2026-01-28 01:28:23,910 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 20:28:29] 2026-01-28 01:28:23,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 20:28:29] 2026-01-28 01:28:23,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 20:28:29] 2026-01-28 01:28:24,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140168132212544)>', '<ExcThread(monitor, started 140167776028416)>']
[2026-01-27 20:28:29] 2026-01-28 01:28:24,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 20:28:29] 2026-01-28 01:28:24,915 | INFO     | [monitor] control thread has ended
[2026-01-27 20:28:29] 2026-01-28 01:28:29,652 | INFO     | all workflow threads have been joined
[2026-01-27 20:28:29] 2026-01-28 01:28:29,652 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 20:28:29] 2026-01-28 01:28:29,653 | INFO     | traces error code: 0
[2026-01-27 20:28:29] 2026-01-28 01:28:29,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 20:28:29] 2026-01-28 01:28:29,792 [wrapper] ==== pilot stdout END ====
[2026-01-27 20:28:29] 2026-01-28 01:28:29,794 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 20:28:29] 2026-01-28 01:28:29,797 [wrapper] pilotpid: 2014194
[2026-01-27 20:28:29] 2026-01-28 01:28:29,799 [wrapper] Pilot exit status: 0
[2026-01-27 20:28:29] 2026-01-28 01:28:29,813 [wrapper] pandaids: 6976809856
[2026-01-27 20:28:29] 2026-01-28 01:28:29,892 [wrapper] cleanup supervisor_pilot 2128819 2014195
[2026-01-27 20:28:29] 2026-01-28 01:28:29,895 [wrapper] Test setup, not cleaning
[2026-01-27 20:28:29] 2026-01-28 01:28:29,897 [wrapper] apfmon messages muted
[2026-01-27 20:28:29] 2026-01-28 01:28:29,900 [wrapper] ==== wrapper stdout END ====
[2026-01-27 20:28:29] 2026-01-28 01:28:29,902 [wrapper] ==== wrapper stderr END ====
[2026-01-27 20:28:29]  *** Error codes and diagnostics ***
[2026-01-27 20:28:29]     "exeErrorCode": 0,
[2026-01-27 20:28:29]     "exeErrorDiag": "",
[2026-01-27 20:28:29]     "pilotErrorCode": 0,
[2026-01-27 20:28:29]     "pilotErrorDiag": "",
[2026-01-27 20:28:29]  *** Listing of results directory ***
[2026-01-27 20:28:30] total 430668
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas    584422 Jan 20 13:43 pilot3.tar.gz
[2026-01-27 20:28:30] -rwx------. 1 boincer umatlas     36322 Jan 20 14:09 runpilot2-wrapper.sh
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas      5111 Jan 20 14:09 queuedata.json
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas       100 Jan 27 18:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 20:28:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 27 18:57 run_atlas
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas       105 Jan 27 18:57 job.xml
[2026-01-27 20:28:30] -rw-r--r--. 2 boincer umatlas 261465236 Jan 27 18:57 EVNT.48299563._000014.pool.root.1
[2026-01-27 20:28:30] drwxrwx--x. 2 boincer umatlas      4096 Jan 27 18:57 shared
[2026-01-27 20:28:30] -rw-r--r--. 2 boincer umatlas    597778 Jan 27 18:57 input.tar.gz
[2026-01-27 20:28:30] -rw-r--r--. 2 boincer umatlas     15845 Jan 27 18:57 start_atlas.sh
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas         0 Jan 27 18:57 boinc_lockfile
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas      2610 Jan 27 18:57 pandaJob.out
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas        57 Jan 27 18:57 setup.sh.local
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas   1005240 Jan 27 18:57 agis_schedconf.cvmfs.json
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas   1516246 Jan 27 18:57 agis_ddmendpoints.agis.ALL.json
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas       443 Jan 27 18:57 workernode_map.json
[2026-01-27 20:28:30] drwx------. 5 boincer umatlas      4096 Jan 27 18:57 pilot3
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas      6842 Jan 27 20:19 init_data.xml
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas       529 Jan 27 20:27 boinc_task_state.xml
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas 173352727 Jan 27 20:27 HITS.48299565._000331.pool.root.1
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas      1027 Jan 27 20:27 memory_monitor_summary.json
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas    330841 Jan 27 20:27 log.48299565._000331.job.log.tgz.1
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas      6372 Jan 27 20:27 heartbeat.json
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 20:28 boinc_mmap_file
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas        27 Jan 27 20:28 wrapper_checkpoint.txt
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas        95 Jan 27 20:28 pilot_heartbeat.json
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas      4893 Jan 27 20:28 pilotlog.txt
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas    788810 Jan 27 20:28 log.48299565._000331.job.log.1
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas       357 Jan 27 20:28 output.list
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas       620 Jan 27 20:28 runtime_log
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas   1136640 Jan 27 20:28 result.tar.gz
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas      9351 Jan 27 20:28 runtime_log.err
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas       655 Jan 27 20:28 RgQLDmgHW28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzMwKDmHBu05m.diag
[2026-01-27 20:28:30] -rw-r--r--. 1 boincer umatlas     22178 Jan 27 20:28 stderr.txt
[2026-01-27 20:28:30] HITS file was successfully produced:
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas 173352727 Jan 27 20:27 shared/HITS.pool.root.1
[2026-01-27 20:28:30]  *** Contents of shared directory: ***
[2026-01-27 20:28:30] total 426352
[2026-01-27 20:28:30] -rw-r--r--. 2 boincer umatlas 261465236 Jan 27 18:57 ATLAS.root_0
[2026-01-27 20:28:30] -rw-r--r--. 2 boincer umatlas    597778 Jan 27 18:57 input.tar.gz
[2026-01-27 20:28:30] -rw-r--r--. 2 boincer umatlas     15845 Jan 27 18:57 start_atlas.sh
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas 173352727 Jan 27 20:27 HITS.pool.root.1
[2026-01-27 20:28:30] -rw-------. 1 boincer umatlas   1136640 Jan 27 20:28 result.tar.gz
20:28:31 (2010372): run_atlas exited; CPU time 38447.394157
20:28:31 (2010372): called boinc_finish(0)

</stderr_txt>
]]>

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