Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:01:42 (491093): wrapper (7.7.26015): starting
18:01:42 (491093): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 18:01:42] Arguments: --nthreads 4
[2026-01-27 18:01:42] Threads: 4
[2026-01-27 18:01:42] Checking for CVMFS
[2026-01-27 18:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 18:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 18:01:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 18:01:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 18:01:42] 2.9.2.0 2800210 9969 102676 155592 3 50 34625951 36864000 0 130560 0 5138557 99.988 324281 7390 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 18:01:42] CVMFS is ok
[2026-01-27 18:01:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 18:01:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 18:01:42] Further information can be found at the LHC@home message board.
[2026-01-27 18:01:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 18:01:42] Checking for apptainer binary...
[2026-01-27 18:01:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 18:01:42] Running /usr/bin/apptainer --version
[2026-01-27 18:01:42] apptainer version 1.4.1-1.1
[2026-01-27 18:01:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 18:01:43] thA319
[2026-01-27 18:01:43] apptainer works
[2026-01-27 18:01:43] Set ATHENA_PROC_NUMBER=4
[2026-01-27 18:01:43] Set ATHENA_CORE_NUMBER=4
[2026-01-27 18:01:43] Starting ATLAS job with PandaID=6984063254
[2026-01-27 18:01:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 19:19:11]  *** The last 200 lines of the pilot log: ***
[2026-01-27 19:19:11] 2026-01-27 18:18:51,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,632 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 19:19:11] 2026-01-27 18:18:51,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 19:19:11] 2026-01-27 18:18:51,632 | INFO     | job 6984063254 has completed (purged errors)
[2026-01-27 19:19:11] 2026-01-27 18:18:51,632 | INFO     | overall cleanup function is called
[2026-01-27 19:19:11] 2026-01-27 18:18:52,639 | INFO     | --- collectZombieJob: --- 10, [499703]
[2026-01-27 19:19:11] 2026-01-27 18:18:52,639 | INFO     | zombie collector waiting for pid 499703
[2026-01-27 19:19:11] 2026-01-27 18:18:52,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 19:19:11] 2026-01-27 18:18:52,639 | INFO     | collected zombie processes
[2026-01-27 19:19:11] 2026-01-27 18:18:52,639 | INFO     | will attempt to kill all subprocesses of pid=499703
[2026-01-27 19:19:11] 2026-01-27 18:18:52,689 | INFO     | process IDs to be killed: [499703] (in reverse order)
[2026-01-27 19:19:11] 2026-01-27 18:18:52,722 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 19:19:11] 2026-01-27 18:18:52,723 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 19:19:11] 2026-01-27 18:18:52,724 | INFO     | did not find any defunct processes belonging to 499703
[2026-01-27 19:19:11] 2026-01-27 18:18:52,726 | INFO     | did not find any defunct processes belonging to 499703
[2026-01-27 19:19:11] 2026-01-27 18:18:52,726 | INFO     | ready for new job
[2026-01-27 19:19:11] 2026-01-27 18:18:52,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 19:19:11] 2026-01-27 18:18:52,727 | INFO     | **************************************
[2026-01-27 19:19:11] 2026-01-27 18:18:52,727 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 19:19:11] 2026-01-27 18:18:52,727 | INFO     | **************************************
[2026-01-27 19:19:11] 2026-01-27 18:18:52,727 | INFO     | 
[2026-01-27 19:19:11] 2026-01-27 18:18:52,727 | INFO     | architecture information:
[2026-01-27 19:19:11] 2026-01-27 18:18:52,727 | INFO     | executing command: cat /etc/os-release
[2026-01-27 19:19:11] 2026-01-27 18:18:52,741 | INFO     | cat /etc/os-release:
[2026-01-27 19:19:11] NAME="CentOS Linux"
[2026-01-27 19:19:11] VERSION="7 (Core)"
[2026-01-27 19:19:11] ID="centos"
[2026-01-27 19:19:11] ID_LIKE="rhel fedora"
[2026-01-27 19:19:11] VERSION_ID="7"
[2026-01-27 19:19:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 19:19:11] ANSI_COLOR="0;31"
[2026-01-27 19:19:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 19:19:11] HOME_URL="https://www.centos.org/"
[2026-01-27 19:19:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 19:19:11] 
[2026-01-27 19:19:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 19:19:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 19:19:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 19:19:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 19:19:11] 
[2026-01-27 19:19:11] 2026-01-27 18:18:52,741 | INFO     | **************************************
[2026-01-27 19:19:11] 2026-01-27 18:18:53,244 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 19:19:11] 2026-01-27 18:18:53,261 | INFO     | sufficient remaining disk space (322923659264 B)
[2026-01-27 19:19:11] 2026-01-27 18:18:53,261 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 19:19:11] 2026-01-27 18:18:53,261 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 19:19:11] 2026-01-27 18:18:53,261 | INFO     | update_server=False
[2026-01-27 19:19:11] 2026-01-27 18:18:53,261 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 19:19:11] 2026-01-27 18:18:53,261 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:19:11] 2026-01-27 18:18:53,262 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 19:19:11] 2026-01-27 18:18:53,262 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 19:19:11] 2026-01-27 18:18:53,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 19:19:11] 2026-01-27 18:18:53,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 19:19:11] 2026-01-27 18:18:53,726 | INFO     | all payload control threads have been joined
[2026-01-27 19:19:11] 2026-01-27 18:18:54,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:19:11] 2026-01-27 18:18:54,139 | INFO     | aborting loop
[2026-01-27 19:19:11] 2026-01-27 18:18:54,240 | INFO     | all data control threads have been joined
[2026-01-27 19:19:11] 2026-01-27 18:18:54,267 | INFO     | [job] queue monitor thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:54,268 | INFO     | [job] retrieve thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:54,462 | INFO     | [payload] failed_post thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:54,593 | INFO     | all job control threads have been joined
[2026-01-27 19:19:11] 2026-01-27 18:18:54,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 19:19:11] 2026-01-27 18:18:54,674 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:54,728 | INFO     | [payload] control thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,113 | INFO     | [payload] validate_post thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 19:19:11] 2026-01-27 18:18:55,144 | INFO     | [job] job monitor thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,246 | INFO     | [data] control thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,371 | INFO     | [job] validate thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,543 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,599 | INFO     | [job] control thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,632 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:55,735 | INFO     | [data] copytool_in thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:56,611 | INFO     | [data] copytool_out thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:59,142 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:18:59,940 | INFO     | [monitor] cgroup control has ended
[2026-01-27 19:19:11] 2026-01-27 18:19:03,653 | INFO     | job.realtimelogging is not enabled
[2026-01-27 19:19:11] 2026-01-27 18:19:04,658 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 19:19:11] 2026-01-27 18:19:06,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761313060672)>', '<ExcThread(monitor, started 139760349722368)>']
[2026-01-27 19:19:11] 2026-01-27 18:19:07,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 19:19:11] 2026-01-27 18:19:07,338 | INFO     | [monitor] control thread has ended
[2026-01-27 19:19:11] 2026-01-27 18:19:11,563 | INFO     | all workflow threads have been joined
[2026-01-27 19:19:11] 2026-01-27 18:19:11,563 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 19:19:11] 2026-01-27 18:19:11,563 | INFO     | traces error code: 0
[2026-01-27 19:19:11] 2026-01-27 18:19:11,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 19:19:11] 2026-01-27 18:19:11,633 [wrapper] ==== pilot stdout END ====
[2026-01-27 19:19:11] 2026-01-27 18:19:11,637 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 19:19:11] 2026-01-27 18:19:11,641 [wrapper] pilotpid: 495195
[2026-01-27 19:19:11] 2026-01-27 18:19:11,644 [wrapper] Pilot exit status: 0
[2026-01-27 19:19:11] 2026-01-27 18:19:11,654 [wrapper] pandaids: 6984063254
[2026-01-27 19:19:11] 2026-01-27 18:19:11,676 [wrapper] cleanup supervisor_pilot  505543 495196
[2026-01-27 19:19:11] 2026-01-27 18:19:11,679 [wrapper] Test setup, not cleaning
[2026-01-27 19:19:11] 2026-01-27 18:19:11,683 [wrapper] apfmon messages muted
[2026-01-27 19:19:11] 2026-01-27 18:19:11,687 [wrapper] ==== wrapper stdout END ====
[2026-01-27 19:19:11] 2026-01-27 18:19:11,690 [wrapper] ==== wrapper stderr END ====
[2026-01-27 19:19:11]  *** Error codes and diagnostics ***
[2026-01-27 19:19:11]     "exeErrorCode": 0,
[2026-01-27 19:19:11]     "exeErrorDiag": "",
[2026-01-27 19:19:11]     "pilotErrorCode": 0,
[2026-01-27 19:19:11]     "pilotErrorDiag": "",
[2026-01-27 19:19:11]  *** Listing of results directory ***
[2026-01-27 19:19:11] total 669692
[2026-01-27 19:19:11] -rwx------ 1 boinc boinc     36322 Jan 26 08:41 runpilot2-wrapper.sh
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc    584422 Jan 26 08:45 pilot3.tar.gz
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc      5111 Jan 26 08:45 queuedata.json
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc       100 Jan 27 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 19:19:11] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 18:01 run_atlas
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc       105 Jan 27 18:01 job.xml
[2026-01-27 19:19:11] -rw-r--r-- 2 boinc boinc 496798061 Jan 27 18:01 EVNT.48317949._000014.pool.root.1
[2026-01-27 19:19:11] -rw-r--r-- 2 boinc boinc    597748 Jan 27 18:01 input.tar.gz
[2026-01-27 19:19:11] -rw-r--r-- 2 boinc boinc     15845 Jan 27 18:01 start_atlas.sh
[2026-01-27 19:19:11] drwxrwx--x 2 boinc boinc      4096 Jan 27 18:01 shared
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc         0 Jan 27 18:01 boinc_setup_complete
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc      6369 Jan 27 18:01 init_data.xml
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc         0 Jan 27 18:01 boinc_lockfile
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc      2517 Jan 27 18:01 pandaJob.out
[2026-01-27 19:19:11] -rw------- 1 boinc boinc   1005178 Jan 27 18:01 agis_schedconf.cvmfs.json
[2026-01-27 19:19:11] -rw------- 1 boinc boinc   1516246 Jan 27 18:01 agis_ddmendpoints.agis.ALL.json
[2026-01-27 19:19:11] -rw------- 1 boinc boinc       420 Jan 27 18:01 workernode_map.json
[2026-01-27 19:19:11] drwx------ 5 boinc boinc      4096 Jan 27 18:01 pilot3
[2026-01-27 19:19:11] -rw------- 1 boinc boinc        95 Jan 27 19:18 pilot_heartbeat.json
[2026-01-27 19:19:11] -rw------- 1 boinc boinc 183085168 Jan 27 19:18 HITS.48317952._000714.pool.root.1
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc       530 Jan 27 19:18 boinc_task_state.xml
[2026-01-27 19:19:11] -rw------- 1 boinc boinc      1013 Jan 27 19:18 memory_monitor_summary.json
[2026-01-27 19:19:11] -rw------- 1 boinc boinc    297290 Jan 27 19:18 log.48317952._000714.job.log.tgz.1
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc      8192 Jan 27 19:18 boinc_mmap_file
[2026-01-27 19:19:11] -rw------- 1 boinc boinc      6293 Jan 27 19:18 heartbeat.json
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc        27 Jan 27 19:18 wrapper_checkpoint.txt
[2026-01-27 19:19:11] -rw------- 1 boinc boinc      4624 Jan 27 19:19 pilotlog.txt
[2026-01-27 19:19:11] -rw------- 1 boinc boinc    678828 Jan 27 19:19 log.48317952._000714.job.log.1
[2026-01-27 19:19:11] -rw------- 1 boinc boinc       357 Jan 27 19:19 output.list
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc       620 Jan 27 19:19 runtime_log
[2026-01-27 19:19:11] -rw------- 1 boinc boinc    993280 Jan 27 19:19 result.tar.gz
[2026-01-27 19:19:11] -rw------- 1 boinc boinc       657 Jan 27 19:19 sx5KDmdPW48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2w2KDmsaxoAo.diag
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc      8896 Jan 27 19:19 runtime_log.err
[2026-01-27 19:19:11] -rw-r--r-- 1 boinc boinc     11728 Jan 27 19:19 stderr.txt
[2026-01-27 19:19:11] HITS file was successfully produced:
[2026-01-27 19:19:11] -rw------- 1 boinc boinc 183085168 Jan 27 19:18 shared/HITS.pool.root.1
[2026-01-27 19:19:11]  *** Contents of shared directory: ***
[2026-01-27 19:19:11] total 665532
[2026-01-27 19:19:11] -rw-r--r-- 2 boinc boinc 496798061 Jan 27 18:01 ATLAS.root_0
[2026-01-27 19:19:11] -rw-r--r-- 2 boinc boinc    597748 Jan 27 18:01 input.tar.gz
[2026-01-27 19:19:11] -rw-r--r-- 2 boinc boinc     15845 Jan 27 18:01 start_atlas.sh
[2026-01-27 19:19:11] -rw------- 1 boinc boinc 183085168 Jan 27 19:18 HITS.pool.root.1
[2026-01-27 19:19:11] -rw------- 1 boinc boinc    993280 Jan 27 19:19 result.tar.gz
19:19:13 (491093): run_atlas exited; CPU time 17381.928181
19:19:13 (491093): called boinc_finish(0)

</stderr_txt>
]]>

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