Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:16:05 (4147793): wrapper (7.7.26015): starting
17:16:05 (4147793): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 17:16:05] Arguments: --nthreads 3
[2026-01-27 17:16:05] Threads: 3
[2026-01-27 17:16:05] Checking for CVMFS
[2026-01-27 17:16:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 17:16:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 17:16:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 17:16:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 17:16:06] 2.9.2.0 3847903 1252 61196 155591 2 9 17844433 36864000 0 130560 0 477898 99.982 46581 25935 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 17:16:06] CVMFS is ok
[2026-01-27 17:16:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 17:16:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 17:16:06] Further information can be found at the LHC@home message board.
[2026-01-27 17:16:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 17:16:06] Checking for apptainer binary...
[2026-01-27 17:16:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 17:16:06] Running /usr/bin/apptainer --version
[2026-01-27 17:16:06] apptainer version 1.4.1-1.1
[2026-01-27 17:16:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 17:16:06] atlasA221b
[2026-01-27 17:16:06] apptainer works
[2026-01-27 17:16:06] Set ATHENA_PROC_NUMBER=3
[2026-01-27 17:16:06] Set ATHENA_CORE_NUMBER=3
[2026-01-27 17:16:06] Starting ATLAS job with PandaID=6976491580
[2026-01-27 17:16:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 21:43:55]  *** The last 200 lines of the pilot log: ***
[2026-01-27 21:43:55] 2026-01-27 20:43:23,135 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 21:43:55] 2026-01-27 20:43:23,135 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 21:43:55] 2026-01-27 20:43:23,135 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 21:43:55] 2026-01-27 20:43:23,135 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 21:43:55] 2026-01-27 20:43:23,135 | INFO     | job 6976491580 has completed (purged errors)
[2026-01-27 21:43:55] 2026-01-27 20:43:23,136 | INFO     | overall cleanup function is called
[2026-01-27 21:43:55] 2026-01-27 20:43:23,769 | WARNING  | process 4156323 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 21:43:55] 2026-01-27 20:43:23,813 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 21:43:55] 2026-01-27 20:43:23,866 | INFO     | number of running child processes to parent process 4156323: 1
[2026-01-27 21:43:55] 2026-01-27 20:43:23,866 | INFO     | maximum number of monitored processes: 8
[2026-01-27 21:43:55] 2026-01-27 20:43:23,866 | INFO     | aborting job monitoring since job object (job id=6976491580) has expired
[2026-01-27 21:43:55] 2026-01-27 20:43:24,143 | INFO     | --- collectZombieJob: --- 10, [4156323]
[2026-01-27 21:43:55] 2026-01-27 20:43:24,144 | INFO     | zombie collector waiting for pid 4156323
[2026-01-27 21:43:55] 2026-01-27 20:43:24,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 21:43:55] 2026-01-27 20:43:24,144 | INFO     | collected zombie processes
[2026-01-27 21:43:55] 2026-01-27 20:43:24,144 | INFO     | will attempt to kill all subprocesses of pid=4156323
[2026-01-27 21:43:55] 2026-01-27 20:43:24,199 | INFO     | process IDs to be killed: [4156323] (in reverse order)
[2026-01-27 21:43:55] 2026-01-27 20:43:24,228 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 21:43:55] 2026-01-27 20:43:24,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 21:43:55] 2026-01-27 20:43:24,230 | INFO     | did not find any defunct processes belonging to 4156323
[2026-01-27 21:43:55] 2026-01-27 20:43:24,232 | INFO     | did not find any defunct processes belonging to 4156323
[2026-01-27 21:43:55] 2026-01-27 20:43:24,232 | INFO     | ready for new job
[2026-01-27 21:43:55] 2026-01-27 20:43:24,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 21:43:55] 2026-01-27 20:43:24,232 | INFO     | **************************************
[2026-01-27 21:43:55] 2026-01-27 20:43:24,233 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 21:43:55] 2026-01-27 20:43:24,233 | INFO     | **************************************
[2026-01-27 21:43:55] 2026-01-27 20:43:24,233 | INFO     | 
[2026-01-27 21:43:55] 2026-01-27 20:43:24,233 | INFO     | architecture information:
[2026-01-27 21:43:55] 2026-01-27 20:43:24,233 | INFO     | executing command: cat /etc/os-release
[2026-01-27 21:43:55] 2026-01-27 20:43:24,243 | INFO     | cat /etc/os-release:
[2026-01-27 21:43:55] NAME="CentOS Linux"
[2026-01-27 21:43:55] VERSION="7 (Core)"
[2026-01-27 21:43:55] ID="centos"
[2026-01-27 21:43:55] ID_LIKE="rhel fedora"
[2026-01-27 21:43:55] VERSION_ID="7"
[2026-01-27 21:43:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 21:43:55] ANSI_COLOR="0;31"
[2026-01-27 21:43:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 21:43:55] HOME_URL="https://www.centos.org/"
[2026-01-27 21:43:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 21:43:55] 
[2026-01-27 21:43:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 21:43:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 21:43:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 21:43:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 21:43:55] 
[2026-01-27 21:43:55] 2026-01-27 20:43:24,243 | INFO     | **************************************
[2026-01-27 21:43:55] 2026-01-27 20:43:24,746 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | INFO     | sufficient remaining disk space (343035346944 B)
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | INFO     | update_server=False
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | INFO     | will abort loop
[2026-01-27 21:43:55] 2026-01-27 20:43:24,760 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:43:55] 2026-01-27 20:43:24,933 | INFO     | all job control threads have been joined
[2026-01-27 21:43:55] 2026-01-27 20:43:25,234 | INFO     | all data control threads have been joined
[2026-01-27 21:43:55] 2026-01-27 20:43:25,765 | INFO     | [job] retrieve thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:25,766 | INFO     | [job] queue monitor thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:25,767 | INFO     | [job] job monitor thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:25,804 | INFO     | all payload control threads have been joined
[2026-01-27 21:43:55] 2026-01-27 20:43:25,939 | INFO     | [job] control thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:25,998 | INFO     | [data] copytool_in thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:26,192 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:26,237 | INFO     | [data] control thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:26,708 | INFO     | [payload] failed_post thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:26,766 | INFO     | [data] copytool_out thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:26,810 | INFO     | [payload] control thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:26,994 | INFO     | [job] validate thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:27,107 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:27,203 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:27,212 | INFO     | [payload] validate_post thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:27,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 21:43:55] 2026-01-27 20:43:31,980 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:35,054 | INFO     | job.realtimelogging is not enabled
[2026-01-27 21:43:55] 2026-01-27 20:43:36,060 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 21:43:55] 2026-01-27 20:43:44,228 | INFO     | [monitor] cgroup control has ended
[2026-01-27 21:43:55] 2026-01-27 20:43:45,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204455114560)>', '<ExcThread(monitor, started 140203796702976)>']
[2026-01-27 21:43:55] 2026-01-27 20:43:50,698 | INFO     | all workflow threads have been joined
[2026-01-27 21:43:55] 2026-01-27 20:43:50,699 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 21:43:55] 2026-01-27 20:43:50,699 | INFO     | traces error code: 0
[2026-01-27 21:43:55] 2026-01-27 20:43:50,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 21:43:55] 2026-01-27 20:43:55,438 | INFO     | PID=4151855 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 21:43:55] 2026-01-27 20:43:55,438 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 21:43:55] 2026-01-27 20:43:55,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 21:43:55] 2026-01-27 20:43:55,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 21:43:55] 2026-01-27 20:43:55,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 21:43:55] 2026-01-27 20:43:55,438 | INFO     | [monitor] control thread has ended
[2026-01-27 21:43:55] 2026-01-27 20:43:55,485 [wrapper] ==== pilot stdout END ====
[2026-01-27 21:43:55] 2026-01-27 20:43:55,488 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 21:43:55] 2026-01-27 20:43:55,491 [wrapper] pilotpid: 4151855
[2026-01-27 21:43:55] 2026-01-27 20:43:55,494 [wrapper] Pilot exit status: 0
[2026-01-27 21:43:55] 2026-01-27 20:43:55,501 [wrapper] pandaids: 6976491580
[2026-01-27 21:43:55] 2026-01-27 20:43:55,521 [wrapper] cleanup supervisor_pilot 4191645 4151856
[2026-01-27 21:43:55] 2026-01-27 20:43:55,524 [wrapper] Test setup, not cleaning
[2026-01-27 21:43:55] 2026-01-27 20:43:55,527 [wrapper] apfmon messages muted
[2026-01-27 21:43:55] 2026-01-27 20:43:55,529 [wrapper] ==== wrapper stdout END ====
[2026-01-27 21:43:55] 2026-01-27 20:43:55,531 [wrapper] ==== wrapper stderr END ====
[2026-01-27 21:43:55]  *** Error codes and diagnostics ***
[2026-01-27 21:43:55]     "exeErrorCode": 0,
[2026-01-27 21:43:55]     "exeErrorDiag": "",
[2026-01-27 21:43:55]     "pilotErrorCode": 0,
[2026-01-27 21:43:55]     "pilotErrorDiag": "",
[2026-01-27 21:43:55]  *** Listing of results directory ***
[2026-01-27 21:43:55] total 757360
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc    584422 Jan 20 15:43 pilot3.tar.gz
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc      5111 Jan 20 16:20 queuedata.json
[2026-01-27 21:43:55] -rwx------ 1 boinc boinc     36322 Jan 20 16:20 runpilot2-wrapper.sh
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc       100 Jan 27 17:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 21:43:55] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 17:16 run_atlas
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc       105 Jan 27 17:16 job.xml
[2026-01-27 21:43:55] -rw-r--r-- 2 boinc boinc 415050057 Jan 27 17:16 EVNT.47961981._000095.pool.root.1
[2026-01-27 21:43:55] -rw-r--r-- 2 boinc boinc    597960 Jan 27 17:16 input.tar.gz
[2026-01-27 21:43:55] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:16 start_atlas.sh
[2026-01-27 21:43:55] drwxrwx--x 2 boinc boinc      4096 Jan 27 17:16 shared
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:16 boinc_setup_complete
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc      6199 Jan 27 17:16 init_data.xml
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:16 boinc_lockfile
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc      2876 Jan 27 17:16 pandaJob.out
[2026-01-27 21:43:55] -rw------- 1 boinc boinc   1005178 Jan 27 17:16 agis_schedconf.cvmfs.json
[2026-01-27 21:43:55] -rw------- 1 boinc boinc       430 Jan 27 17:16 workernode_map.json
[2026-01-27 21:43:55] drwx------ 5 boinc boinc      4096 Jan 27 17:16 pilot3
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc       531 Jan 27 21:38 boinc_task_state.xml
[2026-01-27 21:43:55] -rw------- 1 boinc boinc 350270340 Jan 27 21:43 HITS.47961985._002739.pool.root.1
[2026-01-27 21:43:55] -rw------- 1 boinc boinc      1051 Jan 27 21:43 memory_monitor_summary.json
[2026-01-27 21:43:55] -rw------- 1 boinc boinc   1516246 Jan 27 21:43 agis_ddmendpoints.agis.ALL.json
[2026-01-27 21:43:55] -rw------- 1 boinc boinc    877091 Jan 27 21:43 log.47961985._002739.job.log.tgz.1
[2026-01-27 21:43:55] -rw------- 1 boinc boinc      6908 Jan 27 21:43 heartbeat.json
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc      8192 Jan 27 21:43 boinc_mmap_file
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc        28 Jan 27 21:43 wrapper_checkpoint.txt
[2026-01-27 21:43:55] -rw------- 1 boinc boinc       747 Jan 27 21:43 pilotlog.txt
[2026-01-27 21:43:55] -rw------- 1 boinc boinc        95 Jan 27 21:43 pilot_heartbeat.json
[2026-01-27 21:43:55] -rw------- 1 boinc boinc   2268380 Jan 27 21:43 log.47961985._002739.job.log.1
[2026-01-27 21:43:55] -rw------- 1 boinc boinc       353 Jan 27 21:43 output.list
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc       620 Jan 27 21:43 runtime_log
[2026-01-27 21:43:55] -rw------- 1 boinc boinc   3164160 Jan 27 21:43 result.tar.gz
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc      8917 Jan 27 21:43 runtime_log.err
[2026-01-27 21:43:55] -rw------- 1 boinc boinc       667 Jan 27 21:43 hZdNDmLiS28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKjvKDm1dMZBn.diag
[2026-01-27 21:43:55] -rw-r--r-- 1 boinc boinc     11939 Jan 27 21:43 stderr.txt
[2026-01-27 21:43:55] HITS file was successfully produced:
[2026-01-27 21:43:55] -rw------- 1 boinc boinc 350270340 Jan 27 21:43 shared/HITS.pool.root.1
[2026-01-27 21:43:55]  *** Contents of shared directory: ***
[2026-01-27 21:43:55] total 751084
[2026-01-27 21:43:55] -rw-r--r-- 2 boinc boinc 415050057 Jan 27 17:16 ATLAS.root_0
[2026-01-27 21:43:55] -rw-r--r-- 2 boinc boinc    597960 Jan 27 17:16 input.tar.gz
[2026-01-27 21:43:55] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:16 start_atlas.sh
[2026-01-27 21:43:55] -rw------- 1 boinc boinc 350270340 Jan 27 21:43 HITS.pool.root.1
[2026-01-27 21:43:55] -rw------- 1 boinc boinc   3164160 Jan 27 21:43 result.tar.gz
21:43:57 (4147793): run_atlas exited; CPU time 46208.169418
21:43:57 (4147793): called boinc_finish(0)

</stderr_txt>
]]>

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