Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:19:57 (19114): wrapper (7.7.26015): starting
10:19:57 (19114): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 10:19:57] Arguments: --nthreads 8
[2026-01-27 10:19:57] Threads: 8
[2026-01-27 10:19:57] Checking for CVMFS
[2026-01-27 10:19:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 10:19:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 10:19:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 10:19:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 10:19:58] 2.11.2.0 2797 155166 95772 155589 3 1 16098787 20275200 1 130560 0 39950166 99.823 10444642 32281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 10:19:58] CVMFS is ok
[2026-01-27 10:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 10:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 10:19:58] Further information can be found at the LHC@home message board.
[2026-01-27 10:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 10:19:58] Checking for apptainer binary...
[2026-01-27 10:19:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 10:19:58] Running /usr/bin/apptainer --version
[2026-01-27 10:19:58] apptainer version 1.3.2-1.el7
[2026-01-27 10:19:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 10:20:00] c-204-11.aglt2.org
[2026-01-27 10:20:00] apptainer works
[2026-01-27 10:20:00] Set ATHENA_PROC_NUMBER=8
[2026-01-27 10:20:00] Set ATHENA_CORE_NUMBER=8
[2026-01-27 10:20:00] Starting ATLAS job with PandaID=6976469373
[2026-01-27 10:20:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:12:27 (30390): wrapper (7.7.26015): starting
13:12:27 (30390): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 13:12:27] Arguments: --nthreads 8
[2026-01-27 13:12:27] Threads: 8
[2026-01-27 13:12:27] This job has been restarted, cleaning up previous attempt
[2026-01-27 13:12:27] Checking for CVMFS
[2026-01-27 13:12:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 13:12:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 13:12:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 13:12:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 13:12:28] 2.11.2.0 2797 155338 95332 155594 3 50 17121088 20275201 1 130560 0 40016466 99.812 10742822 32396 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 13:12:28] CVMFS is ok
[2026-01-27 13:12:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 13:12:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 13:12:28] Further information can be found at the LHC@home message board.
[2026-01-27 13:12:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 13:12:28] Checking for apptainer binary...
[2026-01-27 13:12:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 13:12:28] Running /usr/bin/apptainer --version
[2026-01-27 13:12:28] apptainer version 1.3.2-1.el7
[2026-01-27 13:12:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 13:12:29] c-204-11.aglt2.org
[2026-01-27 13:12:29] apptainer works
[2026-01-27 13:12:29] Set ATHENA_PROC_NUMBER=8
[2026-01-27 13:12:29] Set ATHENA_CORE_NUMBER=8
[2026-01-27 13:12:29] Starting ATLAS job with PandaID=6976469373
[2026-01-27 13:12:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 19:11:39]  *** The last 200 lines of the pilot log: ***
[2026-01-27 19:11:39] 2026-01-28 00:11:06,924 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6976469373/jobReport.json
[2026-01-27 19:11:39] 2026-01-28 00:11:06,928 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-27 19:11:39] 2026-01-28 00:11:06,928 | INFO     | this job has now completed (state=finished)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,929 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,929 | INFO     | log transfer has been attempted: DONE
[2026-01-27 19:11:39] 2026-01-28 00:11:06,929 | INFO     | job 6976469373 has finished - writing final server update
[2026-01-27 19:11:39] 2026-01-28 00:11:06,929 | INFO     | total number of processed events: 350 (read)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,932 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6976469373/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,933 | INFO     | extracted standard info from prmon json
[2026-01-27 19:11:39] 2026-01-28 00:11:06,933 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 19:11:39] 2026-01-28 00:11:06,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 19:11:39] 2026-01-28 00:11:06,939 | INFO     | fitting pss+swap vs Time
[2026-01-27 19:11:39] 2026-01-28 00:11:06,939 | INFO     | sum of square deviations: 13523731319.98861
[2026-01-27 19:11:39] 2026-01-28 00:11:06,942 | INFO     | sum of deviations: 188602183144.26694
[2026-01-27 19:11:39] 2026-01-28 00:11:06,942 | INFO     | mean x: 1769548300.0056818
[2026-01-27 19:11:39] 2026-01-28 00:11:06,942 | INFO     | mean y: 2734425.866477273
[2026-01-27 19:11:39] 2026-01-28 00:11:06,943 | INFO     | intersect: -24675415757.95268
[2026-01-27 19:11:39] 2026-01-28 00:11:06,943 | INFO     | chi2: 4.047920824782956
[2026-01-27 19:11:39] 2026-01-28 00:11:06,944 | INFO     | sum of square deviations: 12955626118.691685
[2026-01-27 19:11:39] 2026-01-28 00:11:06,946 | INFO     | sum of deviations: 261801747081.6598
[2026-01-27 19:11:39] 2026-01-28 00:11:06,947 | INFO     | mean x: 1769548147.5129683
[2026-01-27 19:11:39] 2026-01-28 00:11:06,947 | INFO     | mean y: 2754009.6311239195
[2026-01-27 19:11:39] 2026-01-28 00:11:06,947 | INFO     | intersect: -35755517518.10518
[2026-01-27 19:11:39] 2026-01-28 00:11:06,947 | INFO     | chi2: 2.3645774805742974
[2026-01-27 19:11:39] 2026-01-28 00:11:06,948 | INFO     | current chi2=2.3645774805742974 (change=41.58538215230327 %)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,948 | INFO     | sum of square deviations: 12403660754.856699
[2026-01-27 19:11:39] 2026-01-28 00:11:06,951 | INFO     | sum of deviations: 271410291925.6669
[2026-01-27 19:11:39] 2026-01-28 00:11:06,951 | INFO     | mean x: 1769547995.0204678
[2026-01-27 19:11:39] 2026-01-28 00:11:06,951 | INFO     | mean y: 2756653.3333333335
[2026-01-27 19:11:39] 2026-01-28 00:11:06,951 | INFO     | intersect: -38717549181.93637
[2026-01-27 19:11:39] 2026-01-28 00:11:06,952 | INFO     | chi2: 2.2782778905554943
[2026-01-27 19:11:39] 2026-01-28 00:11:06,952 | INFO     | current chi2=2.2782778905554943 (change=3.6496833251513086 %)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,952 | INFO     | right removable region: 341
[2026-01-27 19:11:39] 2026-01-28 00:11:06,953 | INFO     | sum of square deviations: 12955517538.691679
[2026-01-27 19:11:39] 2026-01-28 00:11:06,956 | INFO     | sum of deviations: 98759588942.5244
[2026-01-27 19:11:39] 2026-01-28 00:11:06,956 | INFO     | mean x: 1769548452.5129683
[2026-01-27 19:11:39] 2026-01-28 00:11:06,956 | INFO     | mean y: 2758460.772334294
[2026-01-27 19:11:39] 2026-01-28 00:11:06,956 | INFO     | intersect: -13486465513.657106
[2026-01-27 19:11:39] 2026-01-28 00:11:06,957 | INFO     | chi2: 1.8947790495810515
[2026-01-27 19:11:39] 2026-01-28 00:11:06,957 | INFO     | current chi2=1.8947790495810515 (change=53.19130161883423 %)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,957 | INFO     | sum of square deviations: 12403485562.926863
[2026-01-27 19:11:39] 2026-01-28 00:11:06,960 | INFO     | sum of deviations: 76758130062.83908
[2026-01-27 19:11:39] 2026-01-28 00:11:06,960 | INFO     | mean x: 1769548605.0146198
[2026-01-27 19:11:39] 2026-01-28 00:11:06,961 | INFO     | mean y: 2764535.0321637425
[2026-01-27 19:11:39] 2026-01-28 00:11:06,961 | INFO     | intersect: -10947967119.157497
[2026-01-27 19:11:39] 2026-01-28 00:11:06,961 | INFO     | chi2: 1.8234148151120413
[2026-01-27 19:11:39] 2026-01-28 00:11:06,961 | INFO     | current chi2=1.8234148151120413 (change=3.7663618079791052 %)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,961 | INFO     | left removable region: 20
[2026-01-27 19:11:39] 2026-01-28 00:11:06,962 | INFO     | sum of square deviations: 10256134429.968866
[2026-01-27 19:11:39] 2026-01-28 00:11:06,964 | INFO     | sum of deviations: 135352057835.3583
[2026-01-27 19:11:39] 2026-01-28 00:11:06,964 | INFO     | mean x: 1769548574.529595
[2026-01-27 19:11:39] 2026-01-28 00:11:06,965 | INFO     | mean y: 2796355.909657321
[2026-01-27 19:11:39] 2026-01-28 00:11:06,965 | INFO     | intersect: -23350255677.25608
[2026-01-27 19:11:39] 2026-01-28 00:11:06,965 | INFO     | chi2: 0.018371744862239955
[2026-01-27 19:11:39] 2026-01-28 00:11:06,965 | INFO     | current memory leak: 13.20 B/s (using 321 data points, chi2=0.02)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | could have reported an average CPU frequency of 1695 MHz (15 samples)
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | ..............................
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | . Timing measurements:
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | . get job = 0 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | . initial setup = 1 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | . payload setup = 9 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,966 | INFO     | . stage-in = 0 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,967 | INFO     | . payload execution = 21472 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,967 | INFO     | . stage-out = 2 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,967 | INFO     | . log creation = 0 s
[2026-01-27 19:11:39] 2026-01-28 00:11:06,967 | INFO     | ..............................
[2026-01-27 19:11:39] 2026-01-28 00:11:07,450 | INFO     | 
[2026-01-27 19:11:39] 2026-01-28 00:11:07,450 | INFO     | job summary report
[2026-01-27 19:11:39] 2026-01-28 00:11:07,450 | INFO     | --------------------------------------------------
[2026-01-27 19:11:39] 2026-01-28 00:11:07,450 | INFO     | PanDA job id: 6976469373
[2026-01-27 19:11:39] 2026-01-28 00:11:07,450 | INFO     | task id: 47961985
[2026-01-27 19:11:39] 2026-01-28 00:11:07,451 | INFO     | errors: (none)
[2026-01-27 19:11:39] 2026-01-28 00:11:07,451 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 19:11:39] 2026-01-28 00:11:07,451 | INFO     | pilot state: finished 
[2026-01-27 19:11:39] 2026-01-28 00:11:07,451 | INFO     | transexitcode: 0
[2026-01-27 19:11:39] 2026-01-28 00:11:07,451 | INFO     | exeerrorcode: 0
[2026-01-27 19:11:39] 2026-01-28 00:11:07,451 | INFO     | exeerrordiag: 
[2026-01-27 19:11:39] 2026-01-28 00:11:07,452 | INFO     | exitcode: 0
[2026-01-27 19:11:39] 2026-01-28 00:11:07,452 | INFO     | exitmsg: OK
[2026-01-27 19:11:39] 2026-01-28 00:11:07,452 | INFO     | cpuconsumptiontime: 164458 s
[2026-01-27 19:11:39] 2026-01-28 00:11:07,452 | INFO     | nevents: 350
[2026-01-27 19:11:39] 2026-01-28 00:11:07,452 | INFO     | neventsw: 0
[2026-01-27 19:11:39] 2026-01-28 00:11:07,452 | INFO     | pid: 4536
[2026-01-27 19:11:39] 2026-01-28 00:11:07,453 | INFO     | pgrp: 4536
[2026-01-27 19:11:39] 2026-01-28 00:11:07,453 | INFO     | corecount: 8
[2026-01-27 19:11:39] 2026-01-28 00:11:07,453 | INFO     | event service: False
[2026-01-27 19:11:39] 2026-01-28 00:11:07,453 | INFO     | sizes: {0: 2284606, 1: 2284840, 11: 2284840, 21485: 2319677, 21488: 2328917}
[2026-01-27 19:11:39] 2026-01-28 00:11:07,453 | INFO     | --------------------------------------------------
[2026-01-27 19:11:39] 2026-01-28 00:11:07,453 | INFO     | 
[2026-01-27 19:11:39] 2026-01-28 00:11:07,454 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-27 19:11:39] 2026-01-28 00:11:07,481 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,482 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,482 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,482 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 19:11:39] 2026-01-28 00:11:07,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 19:11:39] 2026-01-28 00:11:07,485 | INFO     | job 6976469373 has completed (purged errors)
[2026-01-27 19:11:39] 2026-01-28 00:11:07,486 | INFO     | overall cleanup function is called
[2026-01-27 19:11:39] 2026-01-28 00:11:08,501 | INFO     | --- collectZombieJob: --- 10, [4536]
[2026-01-27 19:11:39] 2026-01-28 00:11:08,501 | INFO     | zombie collector waiting for pid 4536
[2026-01-27 19:11:39] 2026-01-28 00:11:08,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 19:11:39] 2026-01-28 00:11:08,502 | INFO     | collected zombie processes
[2026-01-27 19:11:39] 2026-01-28 00:11:08,502 | INFO     | will attempt to kill all subprocesses of pid=4536
[2026-01-27 19:11:39] 2026-01-28 00:11:08,597 | INFO     | process IDs to be killed: [4536] (in reverse order)
[2026-01-27 19:11:39] 2026-01-28 00:11:08,657 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 19:11:39] 2026-01-28 00:11:08,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 19:11:39] 2026-01-28 00:11:08,662 | INFO     | did not find any defunct processes belonging to 4536
[2026-01-27 19:11:39] 2026-01-28 00:11:08,666 | INFO     | did not find any defunct processes belonging to 4536
[2026-01-27 19:11:39] 2026-01-28 00:11:08,666 | INFO     | ready for new job
[2026-01-27 19:11:39] 2026-01-28 00:11:08,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 19:11:39] 2026-01-28 00:11:08,669 | INFO     | **************************************
[2026-01-27 19:11:39] 2026-01-28 00:11:08,669 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 19:11:39] 2026-01-28 00:11:08,669 | INFO     | **************************************
[2026-01-27 19:11:39] 2026-01-28 00:11:08,669 | INFO     | 
[2026-01-27 19:11:39] 2026-01-28 00:11:08,670 | INFO     | architecture information:
[2026-01-27 19:11:39] 2026-01-28 00:11:08,671 | INFO     | executing command: cat /etc/os-release
[2026-01-27 19:11:39] 2026-01-28 00:11:08,689 | INFO     | cat /etc/os-release:
[2026-01-27 19:11:39] NAME="CentOS Linux"
[2026-01-27 19:11:39] VERSION="7 (Core)"
[2026-01-27 19:11:39] ID="centos"
[2026-01-27 19:11:39] ID_LIKE="rhel fedora"
[2026-01-27 19:11:39] VERSION_ID="7"
[2026-01-27 19:11:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 19:11:39] ANSI_COLOR="0;31"
[2026-01-27 19:11:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 19:11:39] HOME_URL="https://www.centos.org/"
[2026-01-27 19:11:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 19:11:39] 
[2026-01-27 19:11:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 19:11:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 19:11:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 19:11:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 19:11:39] 
[2026-01-27 19:11:39] 2026-01-28 00:11:08,689 | INFO     | **************************************
[2026-01-27 19:11:39] 2026-01-28 00:11:09,190 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-27 19:11:39] 2026-01-28 00:11:09,209 | INFO     | sufficient remaining disk space (18023972864 B)
[2026-01-27 19:11:39] 2026-01-28 00:11:09,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 19:11:39] 2026-01-28 00:11:09,210 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 19:11:39] 2026-01-28 00:11:09,210 | INFO     | update_server=False
[2026-01-27 19:11:39] 2026-01-28 00:11:09,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 19:11:39] 2026-01-28 00:11:09,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 19:11:39] 2026-01-28 00:11:09,620 | INFO     | all data control threads have been joined
[2026-01-27 19:11:39] 2026-01-28 00:11:09,682 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:11:39] 2026-01-28 00:11:09,683 | INFO     | aborting loop
[2026-01-27 19:11:39] 2026-01-28 00:11:09,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 19:11:39] 2026-01-28 00:11:10,216 | INFO     | [job] retrieve thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,279 | INFO     | all payload control threads have been joined
[2026-01-27 19:11:39] 2026-01-28 00:11:10,357 | INFO     | [payload] failed_post thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,372 | INFO     | all job control threads have been joined
[2026-01-27 19:11:39] 2026-01-28 00:11:10,427 | INFO     | [data] copytool_in thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,604 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,625 | INFO     | [data] control thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,688 | INFO     | [job] job monitor thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,964 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:10,966 | INFO     | [job] validate thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:11,281 | INFO     | [payload] control thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:11,377 | INFO     | [job] control thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:11,450 | INFO     | [payload] validate_post thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:11,508 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:11,614 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:11,850 | INFO     | [data] copytool_out thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:12,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 19:11:39] 2026-01-28 00:11:13,065 | INFO     | [job] queue monitor thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:13,217 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 19:11:39] 2026-01-28 00:11:22,271 | INFO     | [monitor] cgroup control has ended
[2026-01-27 19:11:39] 2026-01-28 00:11:22,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911679936320)>', '<ExcThread(monitor, started 139910480643840)>']
[2026-01-27 19:11:39] 2026-01-28 00:11:27,324 | INFO     | all workflow threads have been joined
[2026-01-27 19:11:39] 2026-01-28 00:11:27,324 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 19:11:39] 2026-01-28 00:11:27,325 | INFO     | traces error code: 0
[2026-01-27 19:11:39] 2026-01-28 00:11:27,325 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 19:11:39] 2026-01-28 00:11:38,971 | INFO     | PID=2073 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 19:11:39] 2026-01-28 00:11:38,972 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 19:11:39] 2026-01-28 00:11:38,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 19:11:39] 2026-01-28 00:11:38,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 19:11:39] 2026-01-28 00:11:38,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 19:11:39] 2026-01-28 00:11:38,972 | INFO     | [monitor] control thread has ended
[2026-01-27 19:11:39] 2026-01-28 00:11:39,090 [wrapper] ==== pilot stdout END ====
[2026-01-27 19:11:39] 2026-01-28 00:11:39,096 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 19:11:39] 2026-01-28 00:11:39,101 [wrapper] pilotpid: 2073
[2026-01-27 19:11:39] 2026-01-28 00:11:39,105 [wrapper] Pilot exit status: 0
[2026-01-27 19:11:39] 2026-01-28 00:11:39,121 [wrapper] pandaids: 6976469373 6976469373
[2026-01-27 19:11:39] 2026-01-28 00:11:39,161 [wrapper] cleanup supervisor_pilot 11407 2074
[2026-01-27 19:11:39] 2026-01-28 00:11:39,166 [wrapper] Test setup, not cleaning
[2026-01-27 19:11:39] 2026-01-28 00:11:39,170 [wrapper] apfmon messages muted
[2026-01-27 19:11:39] 2026-01-28 00:11:39,174 [wrapper] ==== wrapper stdout END ====
[2026-01-27 19:11:39] 2026-01-28 00:11:39,179 [wrapper] ==== wrapper stderr END ====
[2026-01-27 19:11:39]  *** Error codes and diagnostics ***
[2026-01-27 19:11:39]     "exeErrorCode": 0,
[2026-01-27 19:11:39]     "exeErrorDiag": "",
[2026-01-27 19:11:39]     "pilotErrorCode": 0,
[2026-01-27 19:11:39]     "pilotErrorDiag": "",
[2026-01-27 19:11:39]  *** Listing of results directory ***
[2026-01-27 19:11:39] total 1161512
[2026-01-27 19:11:39] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas    584422 Jan 20 09:43 pilot3.tar.gz
[2026-01-27 19:11:39] -rwx------ 1 boincer umatlas     36322 Jan 20 09:55 runpilot2-wrapper.sh
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas      5111 Jan 20 09:57 queuedata.json
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas       100 Jan 27 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 19:11:39] -rwxr-xr-x 1 boincer umatlas      7986 Jan 27 10:19 run_atlas
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas       105 Jan 27 10:19 job.xml
[2026-01-27 19:11:39] -rw-r--r-- 3 boincer umatlas 412858683 Jan 27 10:19 EVNT.47961981._000043.pool.root.1
[2026-01-27 19:11:39] -rw-r--r-- 3 boincer umatlas 412858683 Jan 27 10:19 ATLAS.root_0
[2026-01-27 19:11:39] -rw-r--r-- 2 boincer umatlas     15845 Jan 27 10:19 start_atlas.sh
[2026-01-27 19:11:39] drwxrwx--x 2 boincer umatlas      4096 Jan 27 10:19 shared
[2026-01-27 19:11:39] -rw-r--r-- 2 boincer umatlas    597968 Jan 27 10:19 input.tar.gz
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas         0 Jan 27 10:19 boinc_lockfile
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas      2876 Jan 27 13:12 pandaJob.out
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas        57 Jan 27 13:12 setup.sh.local
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas   1005228 Jan 27 13:12 agis_schedconf.cvmfs.json
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas       433 Jan 27 13:12 workernode_map.json
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas       532 Jan 27 18:58 boinc_task_state.xml
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas      5912 Jan 27 19:02 init_data.xml
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas 350676150 Jan 27 19:10 HITS.47961985._001338.pool.root.1
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas        96 Jan 27 19:10 pilot_heartbeat.json
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas      1057 Jan 27 19:11 memory_monitor_summary.json
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas   1516246 Jan 27 19:11 agis_ddmendpoints.agis.ALL.json
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas   1520116 Jan 27 19:11 log.47961985._001338.job.log.tgz.1
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas      6984 Jan 27 19:11 heartbeat.json
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas      8192 Jan 27 19:11 boinc_mmap_file
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas        29 Jan 27 19:11 wrapper_checkpoint.txt
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas       744 Jan 27 19:11 pilotlog.txt
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas   3004214 Jan 27 19:11 log.47961985._001338.job.log.1
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas       353 Jan 27 19:11 output.list
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas       620 Jan 27 19:11 runtime_log
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas   4546560 Jan 27 19:11 result.tar.gz
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas      9427 Jan 27 19:11 runtime_log.err
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas       792 Jan 27 19:11 HfXLDmGKS28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2WvKDmV3muyn.diag
[2026-01-27 19:11:39] -rw-r--r-- 1 boincer umatlas     23310 Jan 27 19:11 stderr.txt
[2026-01-27 19:11:39] HITS file was successfully produced:
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas 350676150 Jan 27 19:10 shared/HITS.pool.root.1
[2026-01-27 19:11:39]  *** Contents of shared directory: ***
[2026-01-27 19:11:39] total 750688
[2026-01-27 19:11:39] -rw-r--r-- 3 boincer umatlas 412858683 Jan 27 10:19 ATLAS.root_0
[2026-01-27 19:11:39] -rw-r--r-- 2 boincer umatlas     15845 Jan 27 10:19 start_atlas.sh
[2026-01-27 19:11:39] -rw-r--r-- 2 boincer umatlas    597968 Jan 27 10:19 input.tar.gz
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas 350676150 Jan 27 19:10 HITS.pool.root.1
[2026-01-27 19:11:39] -rw------- 1 boincer umatlas   4546560 Jan 27 19:11 result.tar.gz
19:11:40 (30390): run_atlas exited; CPU time 162778.001245
19:11:40 (30390): called boinc_finish(0)

</stderr_txt>
]]>

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