Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:20:38 (470787): wrapper (7.7.26015): starting
10:20:38 (470787): wrapper: running run_atlas (--nthreads 9)
[2026-01-27 10:20:38] Arguments: --nthreads 9
[2026-01-27 10:20:38] Threads: 9
[2026-01-27 10:20:38] Checking for CVMFS
[2026-01-27 10:20:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 10:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 10:20:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 10:20:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 10:20:39] 2.13.3.0 11836 118023 375024 155589 3 148 30575673 32935937 19776 16776704 0 414866167 99.495 538479560 34697 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-27 10:20:39] CVMFS is ok
[2026-01-27 10:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 10:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 10:20:39] Further information can be found at the LHC@home message board.
[2026-01-27 10:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 10:20:39] Checking for apptainer binary...
[2026-01-27 10:20:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 10:20:39] Running /usr/bin/apptainer --version
[2026-01-27 10:20:39] apptainer version 1.4.5-2.el9
[2026-01-27 10:20:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 10:20:39] c6-2-11-1.aglt2.org
[2026-01-27 10:20:39] apptainer works
[2026-01-27 10:20:39] Set ATHENA_PROC_NUMBER=9
[2026-01-27 10:20:39] Set ATHENA_CORE_NUMBER=9
[2026-01-27 10:20:39] Starting ATLAS job with PandaID=6976469746
[2026-01-27 10:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 17:25:05]  *** The last 200 lines of the pilot log: ***
[2026-01-27 17:25:05] 2026-01-27 22:24:22,317 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6976469746/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:25:05] 2026-01-27 22:24:22,457 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6976469746/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:25:05] 2026-01-27 22:24:22,523 | INFO     | extracted standard info from prmon json
[2026-01-27 17:25:05] 2026-01-27 22:24:22,524 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 17:25:05] 2026-01-27 22:24:22,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 17:25:05] 2026-01-27 22:24:22,576 | INFO     | fitting pss+swap vs Time
[2026-01-27 17:25:05] 2026-01-27 22:24:22,612 | INFO     | sum of square deviations: 22319766848.61545
[2026-01-27 17:25:05] 2026-01-27 22:24:22,644 | INFO     | sum of deviations: 273355461674.981
[2026-01-27 17:25:05] 2026-01-27 22:24:22,645 | INFO     | mean x: 1769539935.0576923
[2026-01-27 17:25:05] 2026-01-27 22:24:22,645 | INFO     | mean y: 2885306.7091346155
[2026-01-27 17:25:05] 2026-01-27 22:24:22,645 | INFO     | intersect: -21669088651.657608
[2026-01-27 17:25:05] 2026-01-27 22:24:22,646 | INFO     | chi2: 4.257891101445468
[2026-01-27 17:25:05] 2026-01-27 22:24:22,682 | INFO     | sum of square deviations: 21524802005.508537
[2026-01-27 17:25:05] 2026-01-27 22:24:22,707 | INFO     | sum of deviations: 379355906474.7687
[2026-01-27 17:25:05] 2026-01-27 22:24:22,707 | INFO     | mean x: 1769539782.5888078
[2026-01-27 17:25:05] 2026-01-27 22:24:22,707 | INFO     | mean y: 2905597.732360097
[2026-01-27 17:25:05] 2026-01-27 22:24:22,708 | INFO     | intersect: -31183693382.149067
[2026-01-27 17:25:05] 2026-01-27 22:24:22,708 | INFO     | chi2: 2.218379343020455
[2026-01-27 17:25:05] 2026-01-27 22:24:22,708 | INFO     | current chi2=2.218379343020455 (change=47.899575396201186 %)
[2026-01-27 17:25:05] 2026-01-27 22:24:22,751 | INFO     | sum of square deviations: 20748878840.78824
[2026-01-27 17:25:05] 2026-01-27 22:24:22,814 | INFO     | sum of deviations: 406947983807.3449
[2026-01-27 17:25:05] 2026-01-27 22:24:22,814 | INFO     | mean x: 1769539630.1133006
[2026-01-27 17:25:05] 2026-01-27 22:24:22,814 | INFO     | mean y: 2910997.8620689656
[2026-01-27 17:25:05] 2026-01-27 22:24:22,815 | INFO     | intersect: -34703088794.58002
[2026-01-27 17:25:05] 2026-01-27 22:24:22,815 | INFO     | chi2: 1.9609879588361436
[2026-01-27 17:25:05] 2026-01-27 22:24:22,815 | INFO     | current chi2=1.9609879588361436 (change=11.60267674661348 %)
[2026-01-27 17:25:05] 2026-01-27 22:24:22,815 | INFO     | right removable region: 405
[2026-01-27 17:25:05] 2026-01-27 22:24:22,816 | INFO     | sum of square deviations: 21524203359.85402
[2026-01-27 17:25:05] 2026-01-27 22:24:22,875 | INFO     | sum of deviations: 176016866672.05807
[2026-01-27 17:25:05] 2026-01-27 22:24:22,923 | INFO     | mean x: 1769540087.5839417
[2026-01-27 17:25:05] 2026-01-27 22:24:22,923 | INFO     | mean y: 2903895.433090024
[2026-01-27 17:25:05] 2026-01-27 22:24:22,923 | INFO     | intersect: -14467731624.024158
[2026-01-27 17:25:05] 2026-01-27 22:24:22,924 | INFO     | chi2: 2.4311132390234547
[2026-01-27 17:25:05] 2026-01-27 22:24:22,924 | INFO     | current chi2=2.4311132390234547 (change=42.90334860376911 %)
[2026-01-27 17:25:05] 2026-01-27 22:24:22,925 | INFO     | sum of square deviations: 20747831853.65518
[2026-01-27 17:25:05] 2026-01-27 22:24:22,991 | INFO     | sum of deviations: 147670141722.3102
[2026-01-27 17:25:05] 2026-01-27 22:24:22,991 | INFO     | mean x: 1769540240.1034484
[2026-01-27 17:25:05] 2026-01-27 22:24:22,991 | INFO     | mean y: 2909461.6354679805
[2026-01-27 17:25:05] 2026-01-27 22:24:22,991 | INFO     | intersect: -12591575585.406782
[2026-01-27 17:25:05] 2026-01-27 22:24:23,025 | INFO     | chi2: 2.362148208450381
[2026-01-27 17:25:05] 2026-01-27 22:24:23,026 | INFO     | current chi2=2.362148208450381 (change=2.8367675131733527 %)
[2026-01-27 17:25:05] 2026-01-27 22:24:23,026 | INFO     | left removable region: 20
[2026-01-27 17:25:05] 2026-01-27 22:24:23,026 | INFO     | sum of square deviations: 17691934621.10645
[2026-01-27 17:25:05] 2026-01-27 22:24:23,041 | INFO     | sum of deviations: 244345659202.74014
[2026-01-27 17:25:05] 2026-01-27 22:24:23,067 | INFO     | mean x: 1769540209.6701298
[2026-01-27 17:25:05] 2026-01-27 22:24:23,067 | INFO     | mean y: 2944473.1948051946
[2026-01-27 17:25:05] 2026-01-27 22:24:23,067 | INFO     | intersect: -24436410423.6843
[2026-01-27 17:25:05] 2026-01-27 22:24:23,068 | INFO     | chi2: 0.019730778205719297
[2026-01-27 17:25:05] 2026-01-27 22:24:23,068 | INFO     | current memory leak: 13.81 B/s (using 385 data points, chi2=0.02)
[2026-01-27 17:25:05] 2026-01-27 22:24:23,069 | INFO     | could have reported an average CPU frequency of 2795 MHz (18 samples)
[2026-01-27 17:25:05] 2026-01-27 22:24:23,069 | INFO     | ..............................
[2026-01-27 17:25:05] 2026-01-27 22:24:23,069 | INFO     | . Timing measurements:
[2026-01-27 17:25:05] 2026-01-27 22:24:23,069 | INFO     | . get job = 0 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,069 | INFO     | . initial setup = 6 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,069 | INFO     | . payload setup = 5 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,070 | INFO     | . stage-in = 0 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,070 | INFO     | . payload execution = 25375 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,070 | INFO     | . stage-out = 5 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,070 | INFO     | . log creation = 0 s
[2026-01-27 17:25:05] 2026-01-27 22:24:23,070 | INFO     | ..............................
[2026-01-27 17:25:05] 2026-01-27 22:24:24,349 | INFO     | 
[2026-01-27 17:25:05] 2026-01-27 22:24:24,349 | INFO     | job summary report
[2026-01-27 17:25:05] 2026-01-27 22:24:24,349 | INFO     | --------------------------------------------------
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | PanDA job id: 6976469746
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | task id: 47961985
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | errors: (none)
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | pilot state: finished 
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | transexitcode: 0
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | exeerrorcode: 0
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | exeerrordiag: 
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | exitcode: 0
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | exitmsg: OK
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | cpuconsumptiontime: 115457 s
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | nevents: 350
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | neventsw: 0
[2026-01-27 17:25:05] 2026-01-27 22:24:24,350 | INFO     | pid: 486318
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | pgrp: 486318
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | corecount: 9
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | event service: False
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | sizes: {0: 2284379, 1: 2284840, 11: 2284840, 25384: 2321222, 25392: 2330216, 25396: 2330272, 25398: 2330646}
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | --------------------------------------------------
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | 
[2026-01-27 17:25:05] 2026-01-27 22:24:24,351 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-27 17:25:05] 2026-01-27 22:24:24,438 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | job 6976469746 has completed (purged errors)
[2026-01-27 17:25:05] 2026-01-27 22:24:24,440 | INFO     | overall cleanup function is called
[2026-01-27 17:25:05] 2026-01-27 22:24:25,546 | INFO     | --- collectZombieJob: --- 10, [486318]
[2026-01-27 17:25:05] 2026-01-27 22:24:25,546 | INFO     | zombie collector waiting for pid 486318
[2026-01-27 17:25:05] 2026-01-27 22:24:25,546 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 17:25:05] 2026-01-27 22:24:25,547 | INFO     | collected zombie processes
[2026-01-27 17:25:05] 2026-01-27 22:24:25,547 | INFO     | will attempt to kill all subprocesses of pid=486318
[2026-01-27 17:25:05] 2026-01-27 22:24:27,712 | INFO     | number of running child processes to parent process 486318: 1
[2026-01-27 17:25:05] 2026-01-27 22:24:27,713 | INFO     | maximum number of monitored processes: 17
[2026-01-27 17:25:05] 2026-01-27 22:24:27,713 | INFO     | aborting job monitoring since job object (job id=6976469746) has expired
[2026-01-27 17:25:05] 2026-01-27 22:24:28,015 | INFO     | PID=480118 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 17:25:05] 2026-01-27 22:24:28,016 | INFO     | .. there are 23 such processes running
[2026-01-27 17:25:05] 2026-01-27 22:24:28,304 | INFO     | process IDs to be killed: [486318] (in reverse order)
[2026-01-27 17:25:05] 2026-01-27 22:24:28,588 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 17:25:05] 2026-01-27 22:24:28,588 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 17:25:05] 2026-01-27 22:24:28,606 | INFO     | did not find any defunct processes belonging to 486318
[2026-01-27 17:25:05] 2026-01-27 22:24:28,623 | INFO     | did not find any defunct processes belonging to 486318
[2026-01-27 17:25:05] 2026-01-27 22:24:28,624 | INFO     | ready for new job
[2026-01-27 17:25:05] 2026-01-27 22:24:28,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 17:25:05] 2026-01-27 22:24:28,627 | INFO     | **************************************
[2026-01-27 17:25:05] 2026-01-27 22:24:28,627 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 17:25:05] 2026-01-27 22:24:28,627 | INFO     | **************************************
[2026-01-27 17:25:05] 2026-01-27 22:24:28,627 | INFO     | 
[2026-01-27 17:25:05] 2026-01-27 22:24:28,634 | INFO     | architecture information:
[2026-01-27 17:25:05] 2026-01-27 22:24:28,635 | INFO     | executing command: cat /etc/os-release
[2026-01-27 17:25:05] 2026-01-27 22:24:28,657 | INFO     | cat /etc/os-release:
[2026-01-27 17:25:05] NAME="CentOS Linux"
[2026-01-27 17:25:05] VERSION="7 (Core)"
[2026-01-27 17:25:05] ID="centos"
[2026-01-27 17:25:05] ID_LIKE="rhel fedora"
[2026-01-27 17:25:05] VERSION_ID="7"
[2026-01-27 17:25:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 17:25:05] ANSI_COLOR="0;31"
[2026-01-27 17:25:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 17:25:05] HOME_URL="https://www.centos.org/"
[2026-01-27 17:25:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 17:25:05] 
[2026-01-27 17:25:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 17:25:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 17:25:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 17:25:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 17:25:05] 
[2026-01-27 17:25:05] 2026-01-27 22:24:28,657 | INFO     | **************************************
[2026-01-27 17:25:05] 2026-01-27 22:24:29,162 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-27 17:25:05] 2026-01-27 22:24:29,244 | INFO     | sufficient remaining disk space (92935290880 B)
[2026-01-27 17:25:05] 2026-01-27 22:24:29,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 17:25:05] 2026-01-27 22:24:29,245 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 17:25:05] 2026-01-27 22:24:29,245 | INFO     | update_server=False
[2026-01-27 17:25:05] 2026-01-27 22:24:29,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 17:25:05] 2026-01-27 22:24:29,245 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 17:25:05] 2026-01-27 22:24:29,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 17:25:05] 2026-01-27 22:24:29,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:25:05] 2026-01-27 22:24:29,246 | INFO     | aborting loop
[2026-01-27 17:25:05] 2026-01-27 22:24:29,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:25:05] 2026-01-27 22:24:29,791 | INFO     | all data control threads have been joined
[2026-01-27 17:25:05] 2026-01-27 22:24:30,252 | INFO     | [job] job monitor thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,259 | INFO     | [job] retrieve thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,299 | INFO     | all payload control threads have been joined
[2026-01-27 17:25:05] 2026-01-27 22:24:30,416 | INFO     | [job] queue monitor thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,456 | INFO     | [payload] validate_post thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,539 | INFO     | all job control threads have been joined
[2026-01-27 17:25:05] 2026-01-27 22:24:30,539 | INFO     | [payload] failed_post thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,549 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,550 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,695 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,768 | INFO     | [job] validate thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,797 | INFO     | [data] control thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:30,859 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:31,251 | INFO     | [data] copytool_out thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:31,301 | INFO     | [data] copytool_in thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:31,305 | INFO     | [payload] control thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:31,547 | INFO     | [job] control thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:33,273 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 17:25:05] 2026-01-27 22:24:39,802 | INFO     | [monitor] cgroup control has ended
[2026-01-27 17:25:05] 2026-01-27 22:24:40,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476487780160)>', '<ExcThread(monitor, started 140475981862656)>']
[2026-01-27 17:25:05] 2026-01-27 22:24:45,921 | INFO     | all workflow threads have been joined
[2026-01-27 17:25:05] 2026-01-27 22:24:45,928 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 17:25:05] 2026-01-27 22:24:45,928 | INFO     | traces error code: 0
[2026-01-27 17:25:05] 2026-01-27 22:24:45,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 17:25:05] 2026-01-27 22:25:03,102 | INFO     | PID=480118 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 17:25:05] 2026-01-27 22:25:03,102 | INFO     | .. there are 23 such processes running
[2026-01-27 17:25:05] 2026-01-27 22:25:03,103 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 17:25:05] 2026-01-27 22:25:03,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 17:25:05] 2026-01-27 22:25:03,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 17:25:05] 2026-01-27 22:25:03,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 17:25:05] 2026-01-27 22:25:03,104 | INFO     | [monitor] control thread has ended
[2026-01-27 17:25:05] 2026-01-27 22:25:04,250 [wrapper] ==== pilot stdout END ====
[2026-01-27 17:25:05] 2026-01-27 22:25:04,268 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 17:25:05] 2026-01-27 22:25:04,302 [wrapper] pilotpid: 480118
[2026-01-27 17:25:05] 2026-01-27 22:25:04,316 [wrapper] Pilot exit status: 0
[2026-01-27 17:25:05] 2026-01-27 22:25:04,403 [wrapper] pandaids: 6976469746
[2026-01-27 17:25:05] 2026-01-27 22:25:04,528 [wrapper] cleanup supervisor_pilot 1557120 480119
[2026-01-27 17:25:05] 2026-01-27 22:25:04,531 [wrapper] Test setup, not cleaning
[2026-01-27 17:25:05] 2026-01-27 22:25:04,541 [wrapper] apfmon messages muted
[2026-01-27 17:25:05] 2026-01-27 22:25:04,544 [wrapper] ==== wrapper stdout END ====
[2026-01-27 17:25:05] 2026-01-27 22:25:04,546 [wrapper] ==== wrapper stderr END ====
[2026-01-27 17:25:05]  *** Error codes and diagnostics ***
[2026-01-27 17:25:05]     "exeErrorCode": 0,
[2026-01-27 17:25:05]     "exeErrorDiag": "",
[2026-01-27 17:25:05]     "pilotErrorCode": 0,
[2026-01-27 17:25:05]     "pilotErrorDiag": "",
[2026-01-27 17:25:05]  *** Listing of results directory ***
[2026-01-27 17:25:05] total 761124
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas    584422 Jan 20 09:43 pilot3.tar.gz
[2026-01-27 17:25:05] -rwx------. 1 boincer umatlas     36322 Jan 20 09:55 runpilot2-wrapper.sh
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas      5111 Jan 20 09:57 queuedata.json
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas       100 Jan 27 10:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 17:25:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 27 10:20 run_atlas
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas       105 Jan 27 10:20 job.xml
[2026-01-27 17:25:05] -rw-r--r--. 2 boincer umatlas 415025787 Jan 27 10:20 EVNT.47961981._000051.pool.root.1
[2026-01-27 17:25:05] -rw-r--r--. 2 boincer umatlas     15845 Jan 27 10:20 start_atlas.sh
[2026-01-27 17:25:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 27 10:20 shared
[2026-01-27 17:25:05] -rw-r--r--. 2 boincer umatlas    597964 Jan 27 10:20 input.tar.gz
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas         0 Jan 27 10:20 boinc_lockfile
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas      2876 Jan 27 10:20 pandaJob.out
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas        57 Jan 27 10:20 setup.sh.local
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas   1005162 Jan 27 10:20 agis_schedconf.cvmfs.json
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas       443 Jan 27 10:20 workernode_map.json
[2026-01-27 17:25:05] drwx------. 5 boincer umatlas      4096 Jan 27 10:20 pilot3
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas       532 Jan 27 17:12 boinc_task_state.xml
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas      6878 Jan 27 17:22 init_data.xml
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas 350875632 Jan 27 17:23 HITS.47961985._001556.pool.root.1
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas      1052 Jan 27 17:24 memory_monitor_summary.json
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas   1516246 Jan 27 17:24 agis_ddmendpoints.agis.ALL.json
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas   1630767 Jan 27 17:24 log.47961985._001556.job.log.tgz.1
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas      6952 Jan 27 17:24 heartbeat.json
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 17:25 boinc_mmap_file
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas       822 Jan 27 17:25 pilotlog.txt
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas        95 Jan 27 17:25 pilot_heartbeat.json
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas        29 Jan 27 17:25 wrapper_checkpoint.txt
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas   3148188 Jan 27 17:25 log.47961985._001556.job.log.1
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas       353 Jan 27 17:25 output.list
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas       620 Jan 27 17:25 runtime_log
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas   4792320 Jan 27 17:25 result.tar.gz
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas      9347 Jan 27 17:25 runtime_log.err
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas       661 Jan 27 17:25 E1aLDmGKS28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmM9oKDmDABnbm.diag
[2026-01-27 17:25:05] -rw-r--r--. 1 boincer umatlas     21320 Jan 27 17:25 stderr.txt
[2026-01-27 17:25:05] HITS file was successfully produced:
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas 350875632 Jan 27 17:23 shared/HITS.pool.root.1
[2026-01-27 17:25:05]  *** Contents of shared directory: ***
[2026-01-27 17:25:05] total 753236
[2026-01-27 17:25:05] -rw-r--r--. 2 boincer umatlas 415025787 Jan 27 10:20 ATLAS.root_0
[2026-01-27 17:25:05] -rw-r--r--. 2 boincer umatlas     15845 Jan 27 10:20 start_atlas.sh
[2026-01-27 17:25:05] -rw-r--r--. 2 boincer umatlas    597964 Jan 27 10:20 input.tar.gz
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas 350875632 Jan 27 17:23 HITS.pool.root.1
[2026-01-27 17:25:05] -rw-------. 1 boincer umatlas   4792320 Jan 27 17:25 result.tar.gz
17:25:07 (470787): run_atlas exited; CPU time 116206.821478
17:25:07 (470787): called boinc_finish(0)

</stderr_txt>
]]>

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