Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:48 (17359): wrapper (7.7.26015): starting
19:16:48 (17359): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 19:16:48] Arguments: --nthreads 8
[2026-01-27 19:16:48] Threads: 8
[2026-01-27 19:16:48] Checking for CVMFS
[2026-01-27 19:16:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 19:16:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 19:16:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 19:16:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 19:16:51] 2.11.2.0 29064 61666 130932 155595 2 49 22198752 25165825 899 130560 0 22096557 99.847 14122027 3020 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 19:16:51] CVMFS is ok
[2026-01-27 19:16:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 19:16:52] Checking for apptainer binary...
[2026-01-27 19:16:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 19:16:52] Running /usr/bin/apptainer --version
[2026-01-27 19:16:52] apptainer version 1.3.2-1.el7
[2026-01-27 19:16:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 19:17:00] cg-vwn462.simple-grid.lan
[2026-01-27 19:17:00] apptainer works
[2026-01-27 19:17:00] Set ATHENA_PROC_NUMBER=8
[2026-01-27 19:17:00] Set ATHENA_CORE_NUMBER=8
[2026-01-27 19:17:00] Starting ATLAS job with PandaID=6984061897
[2026-01-27 19:17:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 23:26:47]  *** The last 200 lines of the pilot log: ***
[2026-01-27 23:26:47] 2026-01-27 22:26:00,731 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6984061897/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,732 | INFO     | extracted standard info from prmon json
[2026-01-27 23:26:47] 2026-01-27 22:26:00,732 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 23:26:47] 2026-01-27 22:26:00,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 23:26:47] 2026-01-27 22:26:00,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 23:26:47] 2026-01-27 22:26:00,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 23:26:47] 2026-01-27 22:26:00,737 | INFO     | fitting pss+swap vs Time
[2026-01-27 23:26:47] 2026-01-27 22:26:00,737 | INFO     | sum of square deviations: 3972995422.5
[2026-01-27 23:26:47] 2026-01-27 22:26:00,739 | INFO     | sum of deviations: 116354639039.00002
[2026-01-27 23:26:47] 2026-01-27 22:26:00,740 | INFO     | mean x: 1769545589.5
[2026-01-27 23:26:47] 2026-01-27 22:26:00,740 | INFO     | mean y: 2417573.3333333335
[2026-01-27 23:26:47] 2026-01-27 22:26:00,740 | INFO     | intersect: -51821160466.37355
[2026-01-27 23:26:47] 2026-01-27 22:26:00,740 | INFO     | chi2: 9.074782672335772
[2026-01-27 23:26:47] 2026-01-27 22:26:00,741 | INFO     | sum of square deviations: 3723716330.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,743 | INFO     | sum of deviations: 129045084834.00003
[2026-01-27 23:26:47] 2026-01-27 22:26:00,743 | INFO     | mean x: 1769545437.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,743 | INFO     | mean y: 2425171.6200873363
[2026-01-27 23:26:47] 2026-01-27 22:26:00,743 | INFO     | intersect: -61321027207.27868
[2026-01-27 23:26:47] 2026-01-27 22:26:00,743 | INFO     | chi2: 8.38915030077231
[2026-01-27 23:26:47] 2026-01-27 22:26:00,744 | INFO     | current chi2=8.38915030077231 (change=7.555358583446789 %)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,744 | INFO     | right removable region: 228
[2026-01-27 23:26:47] 2026-01-27 22:26:00,744 | INFO     | sum of square deviations: 3723716330.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,746 | INFO     | sum of deviations: 34462528036.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,746 | INFO     | mean x: 1769545742.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,746 | INFO     | mean y: 2467645.2139737993
[2026-01-27 23:26:47] 2026-01-27 22:26:00,746 | INFO     | intersect: -16374456465.076517
[2026-01-27 23:26:47] 2026-01-27 22:26:00,750 | INFO     | chi2: 3.8317475841984034
[2026-01-27 23:26:47] 2026-01-27 22:26:00,750 | INFO     | current chi2=3.8317475841984034 (change=57.7758749432162 %)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,750 | INFO     | sum of square deviations: 3485088600.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,752 | INFO     | sum of deviations: -27580423612.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,752 | INFO     | mean x: 1769545894.5
[2026-01-27 23:26:47] 2026-01-27 22:26:00,752 | INFO     | mean y: 2507230.625
[2026-01-27 23:26:47] 2026-01-27 22:26:00,753 | INFO     | intersect: 14006405258.120043
[2026-01-27 23:26:47] 2026-01-27 22:26:00,753 | INFO     | chi2: 1.0357854721939967
[2026-01-27 23:26:47] 2026-01-27 22:26:00,753 | INFO     | current chi2=1.0357854721939967 (change=72.96832712923387 %)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,754 | INFO     | sum of square deviations: 3256879670.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,755 | INFO     | sum of deviations: -35998826334.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,755 | INFO     | mean x: 1769546047.0
[2026-01-27 23:26:47] 2026-01-27 22:26:00,756 | INFO     | mean y: 2512809.4520547944
[2026-01-27 23:26:47] 2026-01-27 22:26:00,756 | INFO     | intersect: 19561596131.670464
[2026-01-27 23:26:47] 2026-01-27 22:26:00,756 | INFO     | chi2: 0.9450478052460227
[2026-01-27 23:26:47] 2026-01-27 22:26:00,756 | INFO     | current chi2=0.9450478052460227 (change=8.760276078768884 %)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,756 | INFO     | left removable region: 30
[2026-01-27 23:26:47] 2026-01-27 22:26:00,757 | INFO     | sum of square deviations: 2406926989.5
[2026-01-27 23:26:47] 2026-01-27 22:26:00,758 | INFO     | sum of deviations: -1825691966.5
[2026-01-27 23:26:47] 2026-01-27 22:26:00,758 | INFO     | mean x: 1769546321.5
[2026-01-27 23:26:47] 2026-01-27 22:26:00,759 | INFO     | mean y: 2508241.287878788
[2026-01-27 23:26:47] 2026-01-27 22:26:00,759 | INFO     | intersect: 1344736949.3482301
[2026-01-27 23:26:47] 2026-01-27 22:26:00,759 | INFO     | chi2: 0.06271020539751315
[2026-01-27 23:26:47] 2026-01-27 22:26:00,759 | INFO     | current memory leak: -0.76 B/s (using 198 data points, chi2=0.06)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | could have reported an average CPU frequency of 2250 MHz (12 samples)
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | ..............................
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | . Timing measurements:
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | . get job = 0 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | . initial setup = 124 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | . payload setup = 144 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,760 | INFO     | . stage-in = 0 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,761 | INFO     | . payload execution = 14413 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,761 | INFO     | . stage-out = 3 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,761 | INFO     | . log creation = 1 s
[2026-01-27 23:26:47] 2026-01-27 22:26:00,761 | INFO     | ..............................
[2026-01-27 23:26:47] 2026-01-27 22:26:01,170 | INFO     | 
[2026-01-27 23:26:47] 2026-01-27 22:26:01,170 | INFO     | job summary report
[2026-01-27 23:26:47] 2026-01-27 22:26:01,170 | INFO     | --------------------------------------------------
[2026-01-27 23:26:47] 2026-01-27 22:26:01,170 | INFO     | PanDA job id: 6984061897
[2026-01-27 23:26:47] 2026-01-27 22:26:01,170 | INFO     | task id: 48317872
[2026-01-27 23:26:47] 2026-01-27 22:26:01,170 | INFO     | errors: (none)
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | pilot state: finished 
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | transexitcode: 0
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | exeerrorcode: 0
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | exeerrordiag: 
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | exitcode: 0
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | exitmsg: OK
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | cpuconsumptiontime: 53587 s
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | nevents: 400
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | neventsw: 0
[2026-01-27 23:26:47] 2026-01-27 22:26:01,171 | INFO     | pid: 25776
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | pgrp: 25776
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | corecount: 8
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | event service: False
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | sizes: {0: 2283145, 1: 2283831, 2: 2284292, 14562: 2315062, 14566: 2324062, 14567: 2324118, 14568: 2324440}
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | --------------------------------------------------
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | 
[2026-01-27 23:26:47] 2026-01-27 22:26:01,172 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2026-01-27 23:26:47] 2026-01-27 22:26:01,859 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,859 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 23:26:47] 2026-01-27 22:26:01,861 | INFO     | job 6984061897 has completed (purged errors)
[2026-01-27 23:26:47] 2026-01-27 22:26:01,862 | INFO     | overall cleanup function is called
[2026-01-27 23:26:47] 2026-01-27 22:26:02,871 | INFO     | --- collectZombieJob: --- 10, [25776]
[2026-01-27 23:26:47] 2026-01-27 22:26:02,871 | INFO     | zombie collector waiting for pid 25776
[2026-01-27 23:26:47] 2026-01-27 22:26:02,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 23:26:47] 2026-01-27 22:26:02,871 | INFO     | collected zombie processes
[2026-01-27 23:26:47] 2026-01-27 22:26:02,871 | INFO     | will attempt to kill all subprocesses of pid=25776
[2026-01-27 23:26:47] 2026-01-27 22:26:02,954 | INFO     | process IDs to be killed: [25776] (in reverse order)
[2026-01-27 23:26:47] 2026-01-27 22:26:04,027 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 23:26:47] 2026-01-27 22:26:04,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 23:26:47] 2026-01-27 22:26:04,030 | INFO     | did not find any defunct processes belonging to 25776
[2026-01-27 23:26:47] 2026-01-27 22:26:04,031 | INFO     | did not find any defunct processes belonging to 25776
[2026-01-27 23:26:47] 2026-01-27 22:26:04,031 | INFO     | ready for new job
[2026-01-27 23:26:47] 2026-01-27 22:26:04,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 23:26:47] 2026-01-27 22:26:04,034 | INFO     | **************************************
[2026-01-27 23:26:47] 2026-01-27 22:26:04,034 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 23:26:47] 2026-01-27 22:26:04,034 | INFO     | **************************************
[2026-01-27 23:26:47] 2026-01-27 22:26:04,034 | INFO     | 
[2026-01-27 23:26:47] 2026-01-27 22:26:04,035 | INFO     | pilot is running in a VM
[2026-01-27 23:26:47] 2026-01-27 22:26:04,035 | INFO     | architecture information:
[2026-01-27 23:26:47] 2026-01-27 22:26:04,043 | INFO     | executing command: cat /etc/os-release
[2026-01-27 23:26:47] 2026-01-27 22:26:04,331 | INFO     | cat /etc/os-release:
[2026-01-27 23:26:47] NAME="CentOS Linux"
[2026-01-27 23:26:47] VERSION="7 (Core)"
[2026-01-27 23:26:47] ID="centos"
[2026-01-27 23:26:47] ID_LIKE="rhel fedora"
[2026-01-27 23:26:47] VERSION_ID="7"
[2026-01-27 23:26:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 23:26:47] ANSI_COLOR="0;31"
[2026-01-27 23:26:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 23:26:47] HOME_URL="https://www.centos.org/"
[2026-01-27 23:26:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 23:26:47] 
[2026-01-27 23:26:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 23:26:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 23:26:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 23:26:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 23:26:47] 
[2026-01-27 23:26:47] 2026-01-27 22:26:04,331 | INFO     | **************************************
[2026-01-27 23:26:47] 2026-01-27 22:26:04,835 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2026-01-27 23:26:47] 2026-01-27 22:26:05,110 | INFO     | sufficient remaining disk space (497113104384 B)
[2026-01-27 23:26:47] 2026-01-27 22:26:05,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 23:26:47] 2026-01-27 22:26:05,110 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 23:26:47] 2026-01-27 22:26:05,110 | INFO     | update_server=False
[2026-01-27 23:26:47] 2026-01-27 22:26:05,110 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 23:26:47] 2026-01-27 22:26:05,319 | INFO     | all data control threads have been joined
[2026-01-27 23:26:47] 2026-01-27 22:26:05,554 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 23:26:47] 2026-01-27 22:26:05,554 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 23:26:47] 2026-01-27 22:26:05,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 23:26:47] 2026-01-27 22:26:05,554 | INFO     | will abort loop
[2026-01-27 23:26:47] 2026-01-27 22:26:05,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 23:26:47] 2026-01-27 22:26:05,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 23:26:47] 2026-01-27 22:26:06,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 23:26:47] 2026-01-27 22:26:06,116 | INFO     | [job] retrieve thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:06,185 | INFO     | all job control threads have been joined
[2026-01-27 23:26:47] 2026-01-27 22:26:06,271 | INFO     | all payload control threads have been joined
[2026-01-27 23:26:47] 2026-01-27 22:26:06,325 | INFO     | [data] control thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:06,560 | INFO     | [job] job monitor thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:06,748 | INFO     | [payload] validate_post thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:06,861 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:06,920 | INFO     | [job] queue monitor thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:06,956 | INFO     | [data] copytool_in thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,052 | INFO     | [job] validate thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,191 | INFO     | [job] control thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,277 | INFO     | [payload] control thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,389 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,393 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,505 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:07,704 | INFO     | [payload] failed_post thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:08,124 | INFO     | [data] copytool_out thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:09,597 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 23:26:47] 2026-01-27 22:26:32,258 | INFO     | 14697s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-27 23:26:47] 2026-01-27 22:26:33,358 | INFO     | PID=21329 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 23:26:47] 2026-01-27 22:26:33,358 | INFO     | .. there are 2 such processes running
[2026-01-27 23:26:47] 2026-01-27 22:26:33,358 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 23:26:47] 2026-01-27 22:26:33,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 23:26:47] 2026-01-27 22:26:33,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 23:26:47] 2026-01-27 22:26:34,743 | INFO     | [monitor] cgroup control has ended
[2026-01-27 23:26:47] 2026-01-27 22:26:36,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140654715914048)>', '<ExcThread(monitor, started 140654497580800)>']
[2026-01-27 23:26:47] 2026-01-27 22:26:37,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 23:26:47] 2026-01-27 22:26:37,382 | INFO     | [monitor] control thread has ended
[2026-01-27 23:26:47] 2026-01-27 22:26:41,861 | INFO     | all workflow threads have been joined
[2026-01-27 23:26:47] 2026-01-27 22:26:41,861 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 23:26:47] 2026-01-27 22:26:41,861 | INFO     | traces error code: 0
[2026-01-27 23:26:47] 2026-01-27 22:26:41,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 23:26:47] 2026-01-27 22:26:42,353 [wrapper] ==== pilot stdout END ====
[2026-01-27 23:26:47] 2026-01-27 22:26:42,433 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 23:26:47] 2026-01-27 22:26:42,535 [wrapper] pilotpid: 21329
[2026-01-27 23:26:47] 2026-01-27 22:26:42,620 [wrapper] Pilot exit status: 0
[2026-01-27 23:26:47] 2026-01-27 22:26:42,998 [wrapper] pandaids: 6984061897
[2026-01-27 23:26:47] 2026-01-27 22:26:43,862 [wrapper] cleanup supervisor_pilot 31740 21330
[2026-01-27 23:26:47] 2026-01-27 22:26:43,957 [wrapper] Test setup, not cleaning
[2026-01-27 23:26:47] 2026-01-27 22:26:44,068 [wrapper] apfmon messages muted
[2026-01-27 23:26:47] 2026-01-27 22:26:44,188 [wrapper] ==== wrapper stdout END ====
[2026-01-27 23:26:47] 2026-01-27 22:26:44,281 [wrapper] ==== wrapper stderr END ====
[2026-01-27 23:26:47]  *** Error codes and diagnostics ***
[2026-01-27 23:26:47]     "exeErrorCode": 0,
[2026-01-27 23:26:47]     "exeErrorDiag": "",
[2026-01-27 23:26:47]     "pilotErrorCode": 0,
[2026-01-27 23:26:47]     "pilotErrorDiag": "",
[2026-01-27 23:26:47]  *** Listing of results directory ***
[2026-01-27 23:26:47] total 672672
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc    584422 Jan 26 08:37 pilot3.tar.gz
[2026-01-27 23:26:47] -rwx------. 1 boinc boinc     36322 Jan 26 08:40 runpilot2-wrapper.sh
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc      5111 Jan 26 08:43 queuedata.json
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc       100 Jan 27 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 23:26:47] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 19:16 run_atlas
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc       105 Jan 27 19:16 job.xml
[2026-01-27 23:26:47] -rw-r--r--. 2 boinc boinc 494413608 Jan 27 19:16 EVNT.48317869._000058.pool.root.1
[2026-01-27 23:26:47] -rw-r--r--. 2 boinc boinc     15845 Jan 27 19:16 start_atlas.sh
[2026-01-27 23:26:47] drwxrwx--x. 2 boinc boinc        68 Jan 27 19:16 shared
[2026-01-27 23:26:47] -rw-r--r--. 2 boinc boinc    597757 Jan 27 19:16 input.tar.gz
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc      6392 Jan 27 19:16 init_data.xml
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc         0 Jan 27 19:16 boinc_lockfile
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc      2516 Jan 27 19:17 pandaJob.out
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc       413 Jan 27 19:23 workernode_map.json
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc   1005244 Jan 27 19:23 agis_schedconf.cvmfs.json
[2026-01-27 23:26:47] drwx------. 5 boinc boinc      4096 Jan 27 19:23 pilot3
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc 185355304 Jan 27 23:24 HITS.48317872._002912.pool.root.1
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc       532 Jan 27 23:25 boinc_task_state.xml
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc      1023 Jan 27 23:25 memory_monitor_summary.json
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc   1516246 Jan 27 23:25 agis_ddmendpoints.agis.ALL.json
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc        95 Jan 27 23:25 pilot_heartbeat.json
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc    505788 Jan 27 23:25 log.48317872._002912.job.log.tgz.1
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc      6313 Jan 27 23:26 heartbeat.json
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc      5183 Jan 27 23:26 pilotlog.txt
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc      8192 Jan 27 23:26 boinc_mmap_file
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc        28 Jan 27 23:26 wrapper_checkpoint.txt
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc   2056048 Jan 27 23:26 log.48317872._002912.job.log.1
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc       357 Jan 27 23:26 output.list
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc       620 Jan 27 23:26 runtime_log
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc   2580480 Jan 27 23:26 result.tar.gz
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc      8832 Jan 27 23:26 runtime_log.err
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc       656 Jan 27 23:26 FziLDmdOW48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlu2KDmC5FaBo.diag
[2026-01-27 23:26:47] -rw-r--r--. 1 boinc boinc     20732 Jan 27 23:26 stderr.txt
[2026-01-27 23:26:47] HITS file was successfully produced:
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc 185355304 Jan 27 23:24 shared/HITS.pool.root.1
[2026-01-27 23:26:47]  *** Contents of shared directory: ***
[2026-01-27 23:26:47] total 666960
[2026-01-27 23:26:47] -rw-r--r--. 2 boinc boinc 494413608 Jan 27 19:16 ATLAS.root_0
[2026-01-27 23:26:47] -rw-r--r--. 2 boinc boinc     15845 Jan 27 19:16 start_atlas.sh
[2026-01-27 23:26:47] -rw-r--r--. 2 boinc boinc    597757 Jan 27 19:16 input.tar.gz
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc 185355304 Jan 27 23:24 HITS.pool.root.1
[2026-01-27 23:26:47] -rw-------. 1 boinc boinc   2580480 Jan 27 23:26 result.tar.gz
23:26:49 (17359): run_atlas exited; CPU time 53731.346404
23:26:49 (17359): called boinc_finish(0)

</stderr_txt>
]]>

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