Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:12:41 (4077278): wrapper (7.7.26015): starting
14:12:41 (4077278): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 14:12:41] Arguments: --nthreads 4
[2026-01-27 14:12:41] Threads: 4
[2026-01-27 14:12:41] Checking for CVMFS
[2026-01-27 14:12:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 14:12:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 14:12:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 14:12:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 14:12:42] 2.13.3.0 6033 96393 87128 155585 2 50 2883220 4097025 0 130560 3 21651495 99.864 4915671 5801 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2026-01-27 14:12:42] CVMFS is ok
[2026-01-27 14:12:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 14:12:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 14:12:42] Further information can be found at the LHC@home message board.
[2026-01-27 14:12:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 14:12:42] Checking for apptainer binary...
[2026-01-27 14:12:42] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2026-01-27 14:12:42] apptainer is not installed, using version from CVMFS
[2026-01-27 14:12:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 14:12:44] pckeatlas07
[2026-01-27 14:12:44] apptainer works
[2026-01-27 14:12:44] Set ATHENA_PROC_NUMBER=4
[2026-01-27 14:12:44] Set ATHENA_CORE_NUMBER=4
[2026-01-27 14:12:44] Starting ATLAS job with PandaID=6984062222
[2026-01-27 14:12:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 16:44:21]  *** The last 200 lines of the pilot log: ***
[2026-01-27 16:44:21] 2026-01-27 15:43:49,313 | INFO     | preparing for final server update for job 6984062222 in state='finished'
[2026-01-27 16:44:21] 2026-01-27 15:43:49,313 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-6984062222/jobReport.json
[2026-01-27 16:44:21] 2026-01-27 15:43:49,315 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-01-27 16:44:21] 2026-01-27 15:43:49,315 | INFO     | this job has now completed (state=finished)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,315 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,315 | INFO     | log transfer has been attempted: DONE
[2026-01-27 16:44:21] 2026-01-27 15:43:49,315 | INFO     | job 6984062222 has finished - writing final server update
[2026-01-27 16:44:21] 2026-01-27 15:43:49,315 | INFO     | total number of processed events: 400 (read)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,316 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6984062222/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,316 | INFO     | extracted standard info from prmon json
[2026-01-27 16:44:21] 2026-01-27 15:43:49,316 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 16:44:21] 2026-01-27 15:43:49,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 16:44:21] 2026-01-27 15:43:49,316 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 16:44:21] 2026-01-27 15:43:49,316 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 16:44:21] 2026-01-27 15:43:49,318 | INFO     | fitting pss+swap vs Time
[2026-01-27 16:44:21] 2026-01-27 15:43:49,318 | INFO     | sum of square deviations: 1005179777.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | sum of deviations: -4229016844.9999995
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | mean x: 1769524085.5
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | mean y: 2415784.2972972975
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | intersect: 7447200624.226205
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | chi2: 1.137192214446326
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | sum of square deviations: 906703512.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | sum of deviations: -3554134438.9999995
[2026-01-27 16:44:21] 2026-01-27 15:43:49,319 | INFO     | mean x: 1769523933.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | mean y: 2416829.8181818184
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | intersect: 6938670927.960495
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | chi2: 1.1378009005217617
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | current chi2=1.1378009005217617 (change=-0.053525346700697744 %)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | right removable region: 142
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | sum of square deviations: 906703512.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,320 | INFO     | sum of deviations: -18764741554.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | mean x: 1769524238.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | mean y: 2437825.06993007
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | intersect: 36623741878.879295
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | chi2: 0.03635994061287925
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | current chi2=0.03635994061287925 (change=96.8026565649166 %)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | sum of square deviations: 814878534.5
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | sum of deviations: -17841571397.0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | mean x: 1769524390.5
[2026-01-27 16:44:21] 2026-01-27 15:43:49,321 | INFO     | mean y: 2436287.884057971
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | intersect: 38745751291.52483
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | chi2: 0.03452962402538344
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | current chi2=0.03452962402538344 (change=5.033882224899678 %)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | left removable region: 20
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | sum of square deviations: 563026370.5
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | sum of deviations: -13751830819.499992
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | mean x: 1769524512.5
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | mean y: 2432816.631147541
[2026-01-27 16:44:21] 2026-01-27 15:43:49,322 | INFO     | intersect: 43222791581.08479
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | chi2: 0.032013288272023606
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | current memory leak: -24.42 B/s (using 122 data points, chi2=0.03)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | could have reported an average CPU frequency of 3749 MHz (9 samples)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | ..............................
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . Timing measurements:
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . get job = 0 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . initial setup = 3 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . payload setup = 9 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . stage-in = 0 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . payload execution = 9018 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . stage-out = 0 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | . log creation = 0 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,323 | INFO     | ..............................
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | 
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | job summary report
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | --------------------------------------------------
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | PanDA job id: 6984062222
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | task id: 48317911
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | errors: (none)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | pilot state: finished 
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | transexitcode: 0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | exeerrorcode: 0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | exeerrordiag: 
[2026-01-27 16:44:21] 2026-01-27 15:43:49,618 | INFO     | exitcode: 0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | exitmsg: OK
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | cpuconsumptiontime: 34844 s
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | nevents: 400
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | neventsw: 0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | pid: 4086485
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | pgrp: 4086485
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | corecount: 4
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | event service: False
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | sizes: {0: 2284001, 1: 2284207, 11: 2284235, 9031: 2312465, 9032: 2312464, 9033: 2321518, 9036: 2321702, 9039: 2321960}
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | --------------------------------------------------
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | 
[2026-01-27 16:44:21] 2026-01-27 15:43:49,619 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | job 6984062222 has completed (purged errors)
[2026-01-27 16:44:21] 2026-01-27 15:43:49,629 | INFO     | overall cleanup function is called
[2026-01-27 16:44:21] 2026-01-27 15:43:50,635 | INFO     | --- collectZombieJob: --- 10, [4086485]
[2026-01-27 16:44:21] 2026-01-27 15:43:50,635 | INFO     | zombie collector waiting for pid 4086485
[2026-01-27 16:44:21] 2026-01-27 15:43:50,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 16:44:21] 2026-01-27 15:43:50,635 | INFO     | collected zombie processes
[2026-01-27 16:44:21] 2026-01-27 15:43:50,635 | INFO     | will attempt to kill all subprocesses of pid=4086485
[2026-01-27 16:44:21] 2026-01-27 15:43:50,675 | INFO     | process IDs to be killed: [4086485] (in reverse order)
[2026-01-27 16:44:21] 2026-01-27 15:43:50,694 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 16:44:21] 2026-01-27 15:43:50,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 16:44:21] 2026-01-27 15:43:50,695 | INFO     | did not find any defunct processes belonging to 4086485
[2026-01-27 16:44:21] 2026-01-27 15:43:50,696 | INFO     | did not find any defunct processes belonging to 4086485
[2026-01-27 16:44:21] 2026-01-27 15:43:50,696 | INFO     | ready for new job
[2026-01-27 16:44:21] 2026-01-27 15:43:50,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 16:44:21] 2026-01-27 15:43:50,697 | INFO     | **************************************
[2026-01-27 16:44:21] 2026-01-27 15:43:50,697 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 16:44:21] 2026-01-27 15:43:50,697 | INFO     | **************************************
[2026-01-27 16:44:21] 2026-01-27 15:43:50,697 | INFO     | 
[2026-01-27 16:44:21] 2026-01-27 15:43:50,698 | INFO     | architecture information:
[2026-01-27 16:44:21] 2026-01-27 15:43:50,698 | INFO     | executing command: cat /etc/os-release
[2026-01-27 16:44:21] 2026-01-27 15:43:50,703 | INFO     | cat /etc/os-release:
[2026-01-27 16:44:21] NAME="CentOS Linux"
[2026-01-27 16:44:21] VERSION="7 (Core)"
[2026-01-27 16:44:21] ID="centos"
[2026-01-27 16:44:21] ID_LIKE="rhel fedora"
[2026-01-27 16:44:21] VERSION_ID="7"
[2026-01-27 16:44:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 16:44:21] ANSI_COLOR="0;31"
[2026-01-27 16:44:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 16:44:21] HOME_URL="https://www.centos.org/"
[2026-01-27 16:44:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 16:44:21] 
[2026-01-27 16:44:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 16:44:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 16:44:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 16:44:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 16:44:21] 
[2026-01-27 16:44:21] 2026-01-27 15:43:50,704 | INFO     | **************************************
[2026-01-27 16:44:21] 2026-01-27 15:43:51,206 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-27 16:44:21] 2026-01-27 15:43:51,213 | INFO     | sufficient remaining disk space (327937949696 B)
[2026-01-27 16:44:21] 2026-01-27 15:43:51,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 16:44:21] 2026-01-27 15:43:51,214 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 16:44:21] 2026-01-27 15:43:51,214 | INFO     | update_server=False
[2026-01-27 16:44:21] 2026-01-27 15:43:51,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 16:44:21] 2026-01-27 15:43:51,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 16:44:21] 2026-01-27 15:43:51,471 | INFO     | all payload control threads have been joined
[2026-01-27 16:44:21] 2026-01-27 15:43:51,528 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 16:44:21] 2026-01-27 15:43:51,528 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 16:44:21] 2026-01-27 15:43:51,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 16:44:21] 2026-01-27 15:43:51,528 | INFO     | will abort loop
[2026-01-27 16:44:21] 2026-01-27 15:43:51,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 16:44:21] 2026-01-27 15:43:52,130 | INFO     | all data control threads have been joined
[2026-01-27 16:44:21] 2026-01-27 15:43:52,219 | INFO     | [job] retrieve thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,219 | INFO     | [job] queue monitor thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 16:44:21] 2026-01-27 15:43:52,400 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,428 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,455 | INFO     | all job control threads have been joined
[2026-01-27 16:44:21] 2026-01-27 15:43:52,477 | INFO     | [payload] control thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,513 | INFO     | [payload] failed_post thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,533 | INFO     | [job] job monitor thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:52,584 | INFO     | [data] copytool_in thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:53,054 | INFO     | [payload] validate_post thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:53,135 | INFO     | [data] control thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:53,351 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:53,460 | INFO     | [job] control thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:53,642 | INFO     | [job] validate thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:53,932 | INFO     | [data] copytool_out thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:43:56,391 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:44:01,575 | INFO     | job.realtimelogging is not enabled
[2026-01-27 16:44:21] 2026-01-27 15:44:02,581 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 16:44:21] 2026-01-27 15:44:14,043 | INFO     | [monitor] cgroup control has ended
[2026-01-27 16:44:21] 2026-01-27 15:44:14,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139722661230400)>', '<ExcThread(monitor, started 139721955059456)>']
[2026-01-27 16:44:21] 2026-01-27 15:44:19,280 | INFO     | all workflow threads have been joined
[2026-01-27 16:44:21] 2026-01-27 15:44:19,280 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 16:44:21] 2026-01-27 15:44:19,280 | INFO     | traces error code: 0
[2026-01-27 16:44:21] 2026-01-27 15:44:19,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 16:44:21] 2026-01-27 15:44:19,955 | INFO     | 9053s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-27 16:44:21] 2026-01-27 15:44:21,011 | INFO     | PID=4081265 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 16:44:21] 2026-01-27 15:44:21,011 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 16:44:21] 2026-01-27 15:44:21,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 16:44:21] 2026-01-27 15:44:21,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 16:44:21] 2026-01-27 15:44:21,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 16:44:21] 2026-01-27 15:44:21,012 | INFO     | [monitor] control thread has ended
[2026-01-27 16:44:21] 2026-01-27 15:44:21,070 [wrapper] ==== pilot stdout END ====
[2026-01-27 16:44:21] 2026-01-27 15:44:21,071 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 16:44:21] 2026-01-27 15:44:21,072 [wrapper] pilotpid: 4081265
[2026-01-27 16:44:21] 2026-01-27 15:44:21,073 [wrapper] Pilot exit status: 0
[2026-01-27 16:44:21] 2026-01-27 15:44:21,077 [wrapper] pandaids: 6984062222
[2026-01-27 16:44:21] 2026-01-27 15:44:21,088 [wrapper] cleanup supervisor_pilot 4107716 4081266
[2026-01-27 16:44:21] 2026-01-27 15:44:21,089 [wrapper] Test setup, not cleaning
[2026-01-27 16:44:21] 2026-01-27 15:44:21,090 [wrapper] apfmon messages muted
[2026-01-27 16:44:21] 2026-01-27 15:44:21,091 [wrapper] ==== wrapper stdout END ====
[2026-01-27 16:44:21] 2026-01-27 15:44:21,092 [wrapper] ==== wrapper stderr END ====
[2026-01-27 16:44:21]  *** Error codes and diagnostics ***
[2026-01-27 16:44:21]     "exeErrorCode": 0,
[2026-01-27 16:44:21]     "exeErrorDiag": "",
[2026-01-27 16:44:21]     "pilotErrorCode": 0,
[2026-01-27 16:44:21]     "pilotErrorDiag": "",
[2026-01-27 16:44:21]  *** Listing of results directory ***
[2026-01-27 16:44:21] total 723688
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc    584422 Jan 26 08:37 pilot3.tar.gz
[2026-01-27 16:44:21] -rwx------ 1 boinc boinc     36322 Jan 26 08:40 runpilot2-wrapper.sh
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc      5111 Jan 26 08:43 queuedata.json
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc       100 Jan 27 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 16:44:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 14:12 run_atlas
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc       105 Jan 27 14:12 job.xml
[2026-01-27 16:44:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 14:12 start_atlas.sh
[2026-01-27 16:44:21] drwxrwx--x 2 boinc boinc        68 Jan 27 14:12 shared
[2026-01-27 16:44:21] -rw-r--r-- 2 boinc boinc    597755 Jan 27 14:12 input.tar.gz
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc      6312 Jan 27 14:12 init_data.xml
[2026-01-27 16:44:21] -rw-r--r-- 2 boinc boinc 532807373 Jan 27 14:12 EVNT.48317909._000015.pool.root.1
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 14:12 boinc_lockfile
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc      2499 Jan 27 14:12 pandaJob.out
[2026-01-27 16:44:21] -rw------- 1 boinc boinc   1002845 Jan 27 14:12 agis_schedconf.cvmfs.json
[2026-01-27 16:44:21] -rw------- 1 boinc boinc   1516246 Jan 27 14:12 agis_ddmendpoints.agis.ALL.json
[2026-01-27 16:44:21] -rw------- 1 boinc boinc       419 Jan 27 14:12 workernode_map.json
[2026-01-27 16:44:21] drwx------ 5 boinc boinc      4096 Jan 27 14:12 pilot3
[2026-01-27 16:44:21] -rw------- 1 boinc boinc 201032242 Jan 27 16:43 HITS.48317911._001010.pool.root.1
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc       530 Jan 27 16:43 boinc_task_state.xml
[2026-01-27 16:44:21] -rw------- 1 boinc boinc      1019 Jan 27 16:43 memory_monitor_summary.json
[2026-01-27 16:44:21] -rw------- 1 boinc boinc    355047 Jan 27 16:43 log.48317911._001010.job.log.tgz.1
[2026-01-27 16:44:21] -rw------- 1 boinc boinc        95 Jan 27 16:43 pilot_heartbeat.json
[2026-01-27 16:44:21] -rw------- 1 boinc boinc      6311 Jan 27 16:43 heartbeat.json
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc        27 Jan 27 16:43 wrapper_checkpoint.txt
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc      8192 Jan 27 16:43 boinc_mmap_file
[2026-01-27 16:44:21] -rw------- 1 boinc boinc       862 Jan 27 16:44 pilotlog.txt
[2026-01-27 16:44:21] -rw------- 1 boinc boinc   1291442 Jan 27 16:44 log.48317911._001010.job.log.1
[2026-01-27 16:44:21] -rw------- 1 boinc boinc       357 Jan 27 16:44 output.list
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc       620 Jan 27 16:44 runtime_log
[2026-01-27 16:44:21] -rw------- 1 boinc boinc   1669120 Jan 27 16:44 result.tar.gz
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc      8815 Jan 27 16:44 runtime_log.err
[2026-01-27 16:44:21] -rw------- 1 boinc boinc       652 Jan 27 16:44 8tZLDmdOW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVT9KDmFWSK5m.diag
[2026-01-27 16:44:21] -rw-r--r-- 1 boinc boinc     21422 Jan 27 16:44 stderr.txt
[2026-01-27 16:44:21] HITS file was successfully produced:
[2026-01-27 16:44:21] -rw------- 1 boinc boinc 201032242 Jan 27 16:43 shared/HITS.pool.root.1
[2026-01-27 16:44:21]  *** Contents of shared directory: ***
[2026-01-27 16:44:21] total 718876
[2026-01-27 16:44:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 14:12 start_atlas.sh
[2026-01-27 16:44:21] -rw-r--r-- 2 boinc boinc    597755 Jan 27 14:12 input.tar.gz
[2026-01-27 16:44:21] -rw-r--r-- 2 boinc boinc 532807373 Jan 27 14:12 ATLAS.root_0
[2026-01-27 16:44:21] -rw------- 1 boinc boinc 201032242 Jan 27 16:43 HITS.pool.root.1
[2026-01-27 16:44:21] -rw------- 1 boinc boinc   1669120 Jan 27 16:44 result.tar.gz
16:44:22 (4077278): run_atlas exited; CPU time 34899.925114
16:44:22 (4077278): called boinc_finish(0)

</stderr_txt>
]]>

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