Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:54:12 (873445): wrapper (7.7.26015): starting
05:54:12 (873445): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 05:54:12] Arguments: --nthreads 8
[2026-01-27 05:54:12] Threads: 8
[2026-01-27 05:54:12] Checking for CVMFS
[2026-01-27 05:54:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 05:54:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 05:54:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 05:54:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 05:54:14] 2.13.3.0 10276 47209 179816 155581 1 914 28812693 40960001 34306 16776704 0 245357993 99.749 160743871 47566 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 05:54:14] CVMFS is ok
[2026-01-27 05:54:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 05:54:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 05:54:14] Further information can be found at the LHC@home message board.
[2026-01-27 05:54:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 05:54:14] Checking for apptainer binary...
[2026-01-27 05:54:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 05:54:14] Running /usr/bin/apptainer --version
[2026-01-27 05:54:14] apptainer version 1.4.5-2.el9
[2026-01-27 05:54:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 05:54:14] c-208-36.aglt2.org
[2026-01-27 05:54:14] apptainer works
[2026-01-27 05:54:14] Set ATHENA_PROC_NUMBER=8
[2026-01-27 05:54:14] Set ATHENA_CORE_NUMBER=8
[2026-01-27 05:54:14] Starting ATLAS job with PandaID=6978754883
[2026-01-27 05:54:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 07:28:56]  *** The last 200 lines of the pilot log: ***
[2026-01-27 07:28:56]  is_tar=False
[2026-01-27 07:28:56]  lfn=log.48310826._003037.job.log.tgz.1
[2026-01-27 07:28:56]  mtime=0
[2026-01-27 07:28:56]  protocol_id=None
[2026-01-27 07:28:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 07:28:56]  replicas=None
[2026-01-27 07:28:56]  scope=mc23_13p6TeV
[2026-01-27 07:28:56]  status=None
[2026-01-27 07:28:56]  status_code=0
[2026-01-27 07:28:56]  storage_token=
[2026-01-27 07:28:56]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6978754883/log.48310826._003037.job.log.tgz.1
[2026-01-27 07:28:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/e4/log.48310826._003037.job.log.tgz.1
[2026-01-27 07:28:56]  workdir=None
[2026-01-27 07:28:56] ]
[2026-01-27 07:28:56] 2026-01-27 12:28:04,417 | INFO     | time since job start (5545s) is within the limit (349056.0s)
[2026-01-27 07:28:56] 2026-01-27 12:28:04,479 | INFO     | transferring file log.48310826._003037.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6978754883/log.48310826._003037.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-27 07:28:56] 2026-01-27 12:28:04,479 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6978754883/log.48310826._003037.job.log.tgz.1 /tmp/boinchome/slots/3/log.48310826._003037.job
[2026-01-27 07:28:56] 2026-01-27 12:28:04,644 | INFO     | adding to output.list: log.48310826._003037.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/e4/log.48310826._003037.job.log.tg
[2026-01-27 07:28:56] 2026-01-27 12:28:04,644 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 07:28:56] 2026-01-27 12:28:04,644 | INFO     | summary of transferred files:
[2026-01-27 07:28:56] 2026-01-27 12:28:04,644 | INFO     |  -- lfn=log.48310826._003037.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 07:28:56] 2026-01-27 12:28:04,645 | INFO     | stage-out finished correctly
[2026-01-27 07:28:56] 2026-01-27 12:28:05,900 | INFO     | monitor loop #360: job 0:6978754883 is in state 'finished'
[2026-01-27 07:28:56] 2026-01-27 12:28:05,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 07:28:56] 2026-01-27 12:28:06,424 | INFO     | time since job start (5547s) is within the limit (349056.0s)
[2026-01-27 07:28:56] 2026-01-27 12:28:07,540 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 07:28:56] 2026-01-27 12:28:08,409 | INFO     | monitor loop #361: job 0:6978754883 is in state 'finished'
[2026-01-27 07:28:56] 2026-01-27 12:28:08,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 07:28:56] 2026-01-27 12:28:08,574 | INFO     | PID=878445 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 07:28:56] 2026-01-27 12:28:08,574 | INFO     | .. there are 31 such processes running
[2026-01-27 07:28:56] 2026-01-27 12:28:09,576 | INFO     | time since job start (5550s) is within the limit (349056.0s)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,017 | INFO     | job 6978754883 has state=finished
[2026-01-27 07:28:56] 2026-01-27 12:28:10,018 | INFO     | preparing for final server update for job 6978754883 in state='finished'
[2026-01-27 07:28:56] 2026-01-27 12:28:10,018 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-6978754883/jobReport.json
[2026-01-27 07:28:56] 2026-01-27 12:28:10,020 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-01-27 07:28:56] 2026-01-27 12:28:10,021 | INFO     | this job has now completed (state=finished)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,021 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,021 | INFO     | log transfer has been attempted: DONE
[2026-01-27 07:28:56] 2026-01-27 12:28:10,021 | INFO     | job 6978754883 has finished - writing final server update
[2026-01-27 07:28:56] 2026-01-27 12:28:10,021 | INFO     | total number of processed events: 400 (read)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,034 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6978754883/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,035 | INFO     | extracted standard info from prmon json
[2026-01-27 07:28:56] 2026-01-27 12:28:10,035 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 07:28:56] 2026-01-27 12:28:10,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 07:28:56] 2026-01-27 12:28:10,035 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 07:28:56] 2026-01-27 12:28:10,035 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 07:28:56] 2026-01-27 12:28:10,036 | INFO     | fitting pss+swap vs Time
[2026-01-27 07:28:56] 2026-01-27 12:28:10,036 | INFO     | sum of square deviations: 177276738.89156646
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | sum of deviations: 168649955.22891575
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | mean x: 1769514227.0361445
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | mean y: 2523169.5903614457
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | intersect: -1680881528.806718
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | chi2: 0.0671341296228825
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | current memory leak: 0.95 B/s (using 83 data points, chi2=0.07)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | ..............................
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | . Timing measurements:
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | . get job = 0 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,037 | INFO     | . initial setup = 37 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,038 | INFO     | . payload setup = 51 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,038 | INFO     | . stage-in = 0 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,038 | INFO     | . payload execution = 5485 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,038 | INFO     | . stage-out = 2 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,038 | INFO     | . log creation = 0 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,038 | INFO     | ..............................
[2026-01-27 07:28:56] 2026-01-27 12:28:10,092 | INFO     | 
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | job summary report
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | --------------------------------------------------
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | PanDA job id: 6978754883
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | task id: 48310826
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | errors: (none)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | pilot state: finished 
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | transexitcode: 0
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | exeerrorcode: 0
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | exeerrordiag: 
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | exitcode: 0
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | exitmsg: OK
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | cpuconsumptiontime: 20486 s
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | nevents: 400
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | neventsw: 0
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | pid: 886984
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | pgrp: 886984
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | corecount: 8
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | event service: False
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | sizes: {0: 2283154, 1: 2284272, 2: 2284272, 5540: 2310883, 5543: 2319881, 5546: 2319937, 5548: 2320259}
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | --------------------------------------------------
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | 
[2026-01-27 07:28:56] 2026-01-27 12:28:10,093 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | job 6978754883 has completed (purged errors)
[2026-01-27 07:28:56] 2026-01-27 12:28:10,224 | INFO     | overall cleanup function is called
[2026-01-27 07:28:56] 2026-01-27 12:28:11,236 | INFO     | --- collectZombieJob: --- 10, [886984]
[2026-01-27 07:28:56] 2026-01-27 12:28:11,237 | INFO     | zombie collector waiting for pid 886984
[2026-01-27 07:28:56] 2026-01-27 12:28:11,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 07:28:56] 2026-01-27 12:28:11,237 | INFO     | collected zombie processes
[2026-01-27 07:28:56] 2026-01-27 12:28:11,237 | INFO     | will attempt to kill all subprocesses of pid=886984
[2026-01-27 07:28:56] 2026-01-27 12:28:12,630 | INFO     | process IDs to be killed: [886984] (in reverse order)
[2026-01-27 07:28:56] 2026-01-27 12:28:12,966 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 07:28:56] 2026-01-27 12:28:12,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 07:28:56] 2026-01-27 12:28:13,073 | INFO     | did not find any defunct processes belonging to 886984
[2026-01-27 07:28:56] 2026-01-27 12:28:13,155 | INFO     | did not find any defunct processes belonging to 886984
[2026-01-27 07:28:56] 2026-01-27 12:28:13,155 | INFO     | ready for new job
[2026-01-27 07:28:56] 2026-01-27 12:28:13,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 07:28:56] 2026-01-27 12:28:13,157 | INFO     | **************************************
[2026-01-27 07:28:56] 2026-01-27 12:28:13,157 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 07:28:56] 2026-01-27 12:28:13,157 | INFO     | **************************************
[2026-01-27 07:28:56] 2026-01-27 12:28:13,157 | INFO     | 
[2026-01-27 07:28:56] 2026-01-27 12:28:13,169 | INFO     | architecture information:
[2026-01-27 07:28:56] 2026-01-27 12:28:13,177 | INFO     | executing command: cat /etc/os-release
[2026-01-27 07:28:56] 2026-01-27 12:28:13,237 | INFO     | cat /etc/os-release:
[2026-01-27 07:28:56] NAME="CentOS Linux"
[2026-01-27 07:28:56] VERSION="7 (Core)"
[2026-01-27 07:28:56] ID="centos"
[2026-01-27 07:28:56] ID_LIKE="rhel fedora"
[2026-01-27 07:28:56] VERSION_ID="7"
[2026-01-27 07:28:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 07:28:56] ANSI_COLOR="0;31"
[2026-01-27 07:28:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 07:28:56] HOME_URL="https://www.centos.org/"
[2026-01-27 07:28:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 07:28:56] 
[2026-01-27 07:28:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 07:28:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 07:28:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 07:28:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 07:28:56] 
[2026-01-27 07:28:56] 2026-01-27 12:28:13,237 | INFO     | **************************************
[2026-01-27 07:28:56] 2026-01-27 12:28:13,741 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-27 07:28:56] 2026-01-27 12:28:13,842 | INFO     | sufficient remaining disk space (171977998336 B)
[2026-01-27 07:28:56] 2026-01-27 12:28:13,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 07:28:56] 2026-01-27 12:28:13,842 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 07:28:56] 2026-01-27 12:28:13,842 | INFO     | update_server=False
[2026-01-27 07:28:56] 2026-01-27 12:28:13,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 07:28:56] 2026-01-27 12:28:13,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 07:28:56] 2026-01-27 12:28:14,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:28:56] 2026-01-27 12:28:14,435 | INFO     | aborting loop
[2026-01-27 07:28:56] 2026-01-27 12:28:14,489 | INFO     | all data control threads have been joined
[2026-01-27 07:28:56] 2026-01-27 12:28:14,626 | INFO     | all payload control threads have been joined
[2026-01-27 07:28:56] 2026-01-27 12:28:14,826 | INFO     | all job control threads have been joined
[2026-01-27 07:28:56] 2026-01-27 12:28:14,849 | INFO     | [job] retrieve thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:28:56] 2026-01-27 12:28:15,160 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,167 | INFO     | [data] copytool_in thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 07:28:56] 2026-01-27 12:28:15,441 | INFO     | [job] job monitor thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,496 | INFO     | [data] control thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,633 | INFO     | [payload] control thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,649 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,802 | INFO     | [payload] validate_post thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,832 | INFO     | [job] control thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:15,957 | INFO     | [job] validate thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:16,055 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:16,129 | INFO     | [job] queue monitor thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:16,176 | INFO     | [payload] failed_post thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:16,330 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:17,350 | INFO     | [data] copytool_out thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:17,915 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 07:28:56] 2026-01-27 12:28:43,363 | INFO     | PID=878445 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 07:28:56] 2026-01-27 12:28:43,364 | INFO     | .. there are 31 such processes running
[2026-01-27 07:28:56] 2026-01-27 12:28:43,364 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 07:28:56] 2026-01-27 12:28:43,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 07:28:56] 2026-01-27 12:28:43,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 07:28:56] 2026-01-27 12:28:48,671 | INFO     | [monitor] cgroup control has ended
[2026-01-27 07:28:56] 2026-01-27 12:28:50,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140386649892672)>', '<ExcThread(monitor, started 140386265704192)>']
[2026-01-27 07:28:56] 2026-01-27 12:28:51,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 07:28:56] 2026-01-27 12:28:51,408 | INFO     | [monitor] control thread has ended
[2026-01-27 07:28:56] 2026-01-27 12:28:55,714 | INFO     | all workflow threads have been joined
[2026-01-27 07:28:56] 2026-01-27 12:28:55,715 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 07:28:56] 2026-01-27 12:28:55,715 | INFO     | traces error code: 0
[2026-01-27 07:28:56] 2026-01-27 12:28:55,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 07:28:56] 2026-01-27 12:28:55,914 [wrapper] ==== pilot stdout END ====
[2026-01-27 07:28:56] 2026-01-27 12:28:55,961 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 07:28:56] 2026-01-27 12:28:55,969 [wrapper] pilotpid: 878445
[2026-01-27 07:28:56] 2026-01-27 12:28:55,982 [wrapper] Pilot exit status: 0
[2026-01-27 07:28:56] 2026-01-27 12:28:56,038 [wrapper] pandaids: 6978754883
[2026-01-27 07:28:56] 2026-01-27 12:28:56,178 [wrapper] cleanup supervisor_pilot 1438270 878446
[2026-01-27 07:28:56] 2026-01-27 12:28:56,185 [wrapper] Test setup, not cleaning
[2026-01-27 07:28:56] 2026-01-27 12:28:56,202 [wrapper] apfmon messages muted
[2026-01-27 07:28:56] 2026-01-27 12:28:56,206 [wrapper] ==== wrapper stdout END ====
[2026-01-27 07:28:56] 2026-01-27 12:28:56,245 [wrapper] ==== wrapper stderr END ====
[2026-01-27 07:28:56]  *** Error codes and diagnostics ***
[2026-01-27 07:28:56]     "exeErrorCode": 0,
[2026-01-27 07:28:56]     "exeErrorDiag": "",
[2026-01-27 07:28:56]     "pilotErrorCode": 0,
[2026-01-27 07:28:56]     "pilotErrorDiag": "",
[2026-01-27 07:28:56]  *** Listing of results directory ***
[2026-01-27 07:28:56] total 671288
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas    584422 Jan 23 08:39 pilot3.tar.gz
[2026-01-27 07:28:56] -rwx------. 1 boincer umatlas     36322 Jan 23 08:40 runpilot2-wrapper.sh
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas      5111 Jan 23 08:41 queuedata.json
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas       100 Jan 27 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 07:28:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 27 05:54 run_atlas
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas       105 Jan 27 05:54 job.xml
[2026-01-27 07:28:56] -rw-r--r--. 2 boincer umatlas 501368368 Jan 27 05:54 EVNT.48310824._000158.pool.root.1
[2026-01-27 07:28:56] -rw-r--r--. 2 boincer umatlas     15845 Jan 27 05:54 start_atlas.sh
[2026-01-27 07:28:56] drwxrwx--x. 2 boincer umatlas      4096 Jan 27 05:54 shared
[2026-01-27 07:28:56] -rw-r--r--. 2 boincer umatlas    597752 Jan 27 05:54 input.tar.gz
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas         0 Jan 27 05:54 boinc_lockfile
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas      2525 Jan 27 05:54 pandaJob.out
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas        57 Jan 27 05:54 setup.sh.local
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas   1002845 Jan 27 05:55 agis_schedconf.cvmfs.json
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas   1516246 Jan 27 05:55 agis_ddmendpoints.agis.ALL.json
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas       431 Jan 27 05:55 workernode_map.json
[2026-01-27 07:28:56] drwx------. 5 boincer umatlas      4096 Jan 27 05:55 pilot3
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas 179873468 Jan 27 07:27 HITS.48310826._003037.pool.root.1
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas       530 Jan 27 07:27 boinc_task_state.xml
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas        95 Jan 27 07:27 pilot_heartbeat.json
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas      1035 Jan 27 07:27 memory_monitor_summary.json
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas    363972 Jan 27 07:28 log.48310826._003037.job.log.tgz.1
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas      7183 Jan 27 07:28 init_data.xml
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas      6336 Jan 27 07:28 heartbeat.json
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas        27 Jan 27 07:28 wrapper_checkpoint.txt
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 07:28 boinc_mmap_file
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas      4820 Jan 27 07:28 pilotlog.txt
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas    742309 Jan 27 07:28 log.48310826._003037.job.log.1
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas       357 Jan 27 07:28 output.list
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas       620 Jan 27 07:28 runtime_log
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas   1126400 Jan 27 07:28 result.tar.gz
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas      9341 Jan 27 07:28 runtime_log.err
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas       652 Jan 27 07:28 7nBMDmsZW38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmol2KDmHaqfBn.diag
[2026-01-27 07:28:56] -rw-r--r--. 1 boincer umatlas     21674 Jan 27 07:28 stderr.txt
[2026-01-27 07:28:56] HITS file was successfully produced:
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas 179873468 Jan 27 07:27 shared/HITS.pool.root.1
[2026-01-27 07:28:56]  *** Contents of shared directory: ***
[2026-01-27 07:28:56] total 666988
[2026-01-27 07:28:56] -rw-r--r--. 2 boincer umatlas 501368368 Jan 27 05:54 ATLAS.root_0
[2026-01-27 07:28:56] -rw-r--r--. 2 boincer umatlas     15845 Jan 27 05:54 start_atlas.sh
[2026-01-27 07:28:56] -rw-r--r--. 2 boincer umatlas    597752 Jan 27 05:54 input.tar.gz
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas 179873468 Jan 27 07:27 HITS.pool.root.1
[2026-01-27 07:28:56] -rw-------. 1 boincer umatlas   1126400 Jan 27 07:28 result.tar.gz
07:28:58 (873445): run_atlas exited; CPU time 20674.744563
07:28:58 (873445): called boinc_finish(0)

</stderr_txt>
]]>

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