Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:50:14 (27705): wrapper (7.7.26015): starting
04:50:14 (27705): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 04:50:14] Arguments: --nthreads 8
[2026-01-27 04:50:14] Threads: 8
[2026-01-27 04:50:14] Checking for CVMFS
[2026-01-27 04:50:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:50:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:50:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:50:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:50:14] 2.11.2.0 3013 28401 83800 155579 3 51 18473203 20275200 1 130560 0 10224400 99.843 2492386 25787 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 04:50:14] CVMFS is ok
[2026-01-27 04:50:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:50:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 04:50:14] Further information can be found at the LHC@home message board.
[2026-01-27 04:50:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:50:14] Checking for apptainer binary...
[2026-01-27 04:50:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:50:14] Running /usr/bin/apptainer --version
[2026-01-27 04:50:14] apptainer version 1.3.2-1.el7
[2026-01-27 04:50:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:50:16] c-115-10.aglt2.org
[2026-01-27 04:50:16] apptainer works
[2026-01-27 04:50:16] Set ATHENA_PROC_NUMBER=8
[2026-01-27 04:50:16] Set ATHENA_CORE_NUMBER=8
[2026-01-27 04:50:16] Starting ATLAS job with PandaID=6984063728
[2026-01-27 04:50:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:31:40 (12306): wrapper (7.7.26015): starting
06:31:40 (12306): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 06:31:40] Arguments: --nthreads 8
[2026-01-27 06:31:40] Threads: 8
[2026-01-27 06:31:40] This job has been restarted, cleaning up previous attempt
[2026-01-27 06:31:40] Checking for CVMFS
[2026-01-27 06:31:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 06:31:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 06:31:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 06:31:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 06:31:41] 2.11.2.0 3013 28502 90140 155583 0 1 18634282 20275201 1 130560 0 10276032 99.844 2501444 25825 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 06:31:41] CVMFS is ok
[2026-01-27 06:31:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 06:31:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 06:31:41] Further information can be found at the LHC@home message board.
[2026-01-27 06:31:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 06:31:41] Checking for apptainer binary...
[2026-01-27 06:31:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 06:31:41] Running /usr/bin/apptainer --version
[2026-01-27 06:31:41] apptainer version 1.3.2-1.el7
[2026-01-27 06:31:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 06:31:43] c-115-10.aglt2.org
[2026-01-27 06:31:43] apptainer works
[2026-01-27 06:31:43] Set ATHENA_PROC_NUMBER=8
[2026-01-27 06:31:43] Set ATHENA_CORE_NUMBER=8
[2026-01-27 06:31:43] Starting ATLAS job with PandaID=6984063728
[2026-01-27 06:31:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:22:33]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:22:33] 2026-01-27 13:22:01,750 | INFO     | monitor loop #500: job 0:6984063728 is in state 'finished'
[2026-01-27 08:22:33] 2026-01-27 13:22:01,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,797 | INFO     | job 6984063728 has state=finished
[2026-01-27 08:22:33] 2026-01-27 13:22:01,797 | INFO     | preparing for final server update for job 6984063728 in state='finished'
[2026-01-27 08:22:33] 2026-01-27 13:22:01,797 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6984063728/jobReport.json
[2026-01-27 08:22:33] 2026-01-27 13:22:01,801 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-27 08:22:33] 2026-01-27 13:22:01,801 | INFO     | this job has now completed (state=finished)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,801 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,801 | INFO     | log transfer has been attempted: DONE
[2026-01-27 08:22:33] 2026-01-27 13:22:01,802 | INFO     | job 6984063728 has finished - writing final server update
[2026-01-27 08:22:33] 2026-01-27 13:22:01,802 | INFO     | total number of processed events: 400 (read)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,805 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6984063728/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,805 | INFO     | extracted standard info from prmon json
[2026-01-27 08:22:33] 2026-01-27 13:22:01,805 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 08:22:33] 2026-01-27 13:22:01,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 08:22:33] 2026-01-27 13:22:01,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 08:22:33] 2026-01-27 13:22:01,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 08:22:33] 2026-01-27 13:22:01,808 | INFO     | fitting pss+swap vs Time
[2026-01-27 08:22:33] 2026-01-27 13:22:01,809 | INFO     | sum of square deviations: 390582207.0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,809 | INFO     | sum of deviations: -3236051982.500001
[2026-01-27 08:22:33] 2026-01-27 13:22:01,809 | INFO     | mean x: 1769516809.5
[2026-01-27 08:22:33] 2026-01-27 13:22:01,809 | INFO     | mean y: 2644882.972222222
[2026-01-27 08:22:33] 2026-01-27 13:22:01,810 | INFO     | intersect: 14663446826.388838
[2026-01-27 08:22:33] 2026-01-27 13:22:01,810 | INFO     | chi2: 1.6151664419419323
[2026-01-27 08:22:33] 2026-01-27 13:22:01,810 | INFO     | sum of square deviations: 338804492.0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,811 | INFO     | sum of deviations: -1322298585.9999993
[2026-01-27 08:22:33] 2026-01-27 13:22:01,811 | INFO     | mean x: 1769516657.0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,811 | INFO     | mean y: 2650525.1165048545
[2026-01-27 08:22:33] 2026-01-27 13:22:01,811 | INFO     | intersect: 6908784973.459491
[2026-01-27 08:22:33] 2026-01-27 13:22:01,812 | INFO     | chi2: 1.6166749049937807
[2026-01-27 08:22:33] 2026-01-27 13:22:01,812 | INFO     | current chi2=1.6166749049937807 (change=-0.09339365979117568 %)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,812 | INFO     | right removable region: 102
[2026-01-27 08:22:33] 2026-01-27 13:22:01,812 | INFO     | sum of square deviations: 338804492.0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,813 | INFO     | sum of deviations: -20579985105.000008
[2026-01-27 08:22:33] 2026-01-27 13:22:01,813 | INFO     | mean x: 1769516962.0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,813 | INFO     | mean y: 2694957.825242718
[2026-01-27 08:22:33] 2026-01-27 13:22:01,814 | INFO     | intersect: 107488379418.59935
[2026-01-27 08:22:33] 2026-01-27 13:22:01,814 | INFO     | chi2: 0.09551663363600298
[2026-01-27 08:22:33] 2026-01-27 13:22:01,814 | INFO     | current chi2=0.09551663363600298 (change=94.08626682949391 %)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,814 | INFO     | sum of square deviations: 291817564.5
[2026-01-27 08:22:33] 2026-01-27 13:22:01,815 | INFO     | sum of deviations: -19664184815.499996
[2026-01-27 08:22:33] 2026-01-27 13:22:01,815 | INFO     | mean x: 1769517114.5
[2026-01-27 08:22:33] 2026-01-27 13:22:01,815 | INFO     | mean y: 2691951.663265306
[2026-01-27 08:22:33] 2026-01-27 13:22:01,815 | INFO     | intersect: 119241955816.18732
[2026-01-27 08:22:33] 2026-01-27 13:22:01,816 | INFO     | chi2: 0.08283445471286811
[2026-01-27 08:22:33] 2026-01-27 13:22:01,816 | INFO     | current chi2=0.08283445471286811 (change=13.277455915651725 %)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,816 | INFO     | left removable region: 20
[2026-01-27 08:22:33] 2026-01-27 13:22:01,816 | INFO     | sum of square deviations: 170944600.5
[2026-01-27 08:22:33] 2026-01-27 13:22:01,816 | INFO     | sum of deviations: -14151218559.5
[2026-01-27 08:22:33] 2026-01-27 13:22:01,817 | INFO     | mean x: 1769517236.5
[2026-01-27 08:22:33] 2026-01-27 13:22:01,817 | INFO     | mean y: 2691351.573170732
[2026-01-27 08:22:33] 2026-01-27 13:22:01,817 | INFO     | intersect: 146487722673.24954
[2026-01-27 08:22:33] 2026-01-27 13:22:01,817 | INFO     | chi2: 0.06734532623015375
[2026-01-27 08:22:33] 2026-01-27 13:22:01,817 | INFO     | current memory leak: -82.78 B/s (using 82 data points, chi2=0.07)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | could have reported an average CPU frequency of 1712 MHz (7 samples)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | ..............................
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | . Timing measurements:
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | . get job = 0 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | . initial setup = 1 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | . payload setup = 8 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | . stage-in = 0 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,818 | INFO     | . payload execution = 6575 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,819 | INFO     | . stage-out = 2 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,819 | INFO     | . log creation = 0 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,819 | INFO     | ..............................
[2026-01-27 08:22:33] 2026-01-27 13:22:01,900 | INFO     | 
[2026-01-27 08:22:33] 2026-01-27 13:22:01,900 | INFO     | job summary report
[2026-01-27 08:22:33] 2026-01-27 13:22:01,900 | INFO     | --------------------------------------------------
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | PanDA job id: 6984063728
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | task id: 48317872
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | errors: (none)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | pilot state: finished 
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | transexitcode: 0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | exeerrorcode: 0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | exeerrordiag: 
[2026-01-27 08:22:33] 2026-01-27 13:22:01,901 | INFO     | exitcode: 0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | exitmsg: OK
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | cpuconsumptiontime: 49103 s
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | nevents: 400
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | neventsw: 0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | pid: 18904
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | pgrp: 18904
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | corecount: 8
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | event service: False
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | sizes: {0: 2284026, 1: 2284260, 11: 2284260, 6587: 2311338, 6590: 2320530}
[2026-01-27 08:22:33] 2026-01-27 13:22:01,902 | INFO     | --------------------------------------------------
[2026-01-27 08:22:33] 2026-01-27 13:22:01,903 | INFO     | 
[2026-01-27 08:22:33] 2026-01-27 13:22:01,903 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-27 08:22:33] 2026-01-27 13:22:01,930 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,931 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,931 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,931 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,931 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,933 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,933 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,934 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,934 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,934 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 08:22:33] 2026-01-27 13:22:01,934 | INFO     | job 6984063728 has completed (purged errors)
[2026-01-27 08:22:33] 2026-01-27 13:22:01,935 | INFO     | overall cleanup function is called
[2026-01-27 08:22:33] 2026-01-27 13:22:02,942 | INFO     | --- collectZombieJob: --- 10, [18904]
[2026-01-27 08:22:33] 2026-01-27 13:22:02,943 | INFO     | zombie collector waiting for pid 18904
[2026-01-27 08:22:33] 2026-01-27 13:22:02,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:22:33] 2026-01-27 13:22:02,943 | INFO     | collected zombie processes
[2026-01-27 08:22:33] 2026-01-27 13:22:02,943 | INFO     | will attempt to kill all subprocesses of pid=18904
[2026-01-27 08:22:33] 2026-01-27 13:22:03,027 | INFO     | process IDs to be killed: [18904] (in reverse order)
[2026-01-27 08:22:33] 2026-01-27 13:22:03,082 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:22:33] 2026-01-27 13:22:03,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:22:33] 2026-01-27 13:22:03,086 | INFO     | did not find any defunct processes belonging to 18904
[2026-01-27 08:22:33] 2026-01-27 13:22:03,089 | INFO     | did not find any defunct processes belonging to 18904
[2026-01-27 08:22:33] 2026-01-27 13:22:03,089 | INFO     | ready for new job
[2026-01-27 08:22:33] 2026-01-27 13:22:03,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:22:33] 2026-01-27 13:22:03,091 | INFO     | **************************************
[2026-01-27 08:22:33] 2026-01-27 13:22:03,091 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:22:33] 2026-01-27 13:22:03,091 | INFO     | **************************************
[2026-01-27 08:22:33] 2026-01-27 13:22:03,091 | INFO     | 
[2026-01-27 08:22:33] 2026-01-27 13:22:03,091 | INFO     | architecture information:
[2026-01-27 08:22:33] 2026-01-27 13:22:03,092 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:22:33] 2026-01-27 13:22:03,111 | INFO     | cat /etc/os-release:
[2026-01-27 08:22:33] NAME="CentOS Linux"
[2026-01-27 08:22:33] VERSION="7 (Core)"
[2026-01-27 08:22:33] ID="centos"
[2026-01-27 08:22:33] ID_LIKE="rhel fedora"
[2026-01-27 08:22:33] VERSION_ID="7"
[2026-01-27 08:22:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:22:33] ANSI_COLOR="0;31"
[2026-01-27 08:22:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:22:33] HOME_URL="https://www.centos.org/"
[2026-01-27 08:22:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:22:33] 
[2026-01-27 08:22:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:22:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:22:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:22:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:22:33] 
[2026-01-27 08:22:33] 2026-01-27 13:22:03,112 | INFO     | **************************************
[2026-01-27 08:22:33] 2026-01-27 13:22:03,615 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-27 08:22:33] 2026-01-27 13:22:03,635 | INFO     | sufficient remaining disk space (18039701504 B)
[2026-01-27 08:22:33] 2026-01-27 13:22:03,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:22:33] 2026-01-27 13:22:03,636 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:22:33] 2026-01-27 13:22:03,636 | INFO     | update_server=False
[2026-01-27 08:22:33] 2026-01-27 13:22:03,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:22:33] 2026-01-27 13:22:03,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:22:33] 2026-01-27 13:22:03,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:22:33] 2026-01-27 13:22:03,637 | INFO     | aborting loop
[2026-01-27 08:22:33] 2026-01-27 13:22:03,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:22:33] 2026-01-27 13:22:03,887 | INFO     | all payload control threads have been joined
[2026-01-27 08:22:33] 2026-01-27 13:22:04,166 | INFO     | all job control threads have been joined
[2026-01-27 08:22:33] 2026-01-27 13:22:04,641 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:04,642 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:04,643 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:04,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:22:33] 2026-01-27 13:22:04,729 | INFO     | all data control threads have been joined
[2026-01-27 08:22:33] 2026-01-27 13:22:04,888 | INFO     | [payload] control thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,172 | INFO     | [job] control thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,298 | INFO     | [job] validate thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,321 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,474 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,498 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,558 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:05,732 | INFO     | [data] control thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:06,016 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:06,161 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:06,726 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:07,639 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:10,615 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:22:33] 2026-01-27 13:22:13,744 | INFO     | job.realtimelogging is not enabled
[2026-01-27 08:22:33] 2026-01-27 13:22:14,749 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:22:33] 2026-01-27 13:22:15,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491415213888)>', '<ExcThread(monitor, started 140490318014208)>']
[2026-01-27 08:22:33] 2026-01-27 13:22:20,995 | INFO     | all workflow threads have been joined
[2026-01-27 08:22:33] 2026-01-27 13:22:20,995 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:22:33] 2026-01-27 13:22:20,996 | INFO     | traces error code: 0
[2026-01-27 08:22:33] 2026-01-27 13:22:20,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:22:33] 2026-01-27 13:22:33,459 | INFO     | PID=16452 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 08:22:33] 2026-01-27 13:22:33,459 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:22:33] 2026-01-27 13:22:33,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:22:33] 2026-01-27 13:22:33,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:22:33] 2026-01-27 13:22:33,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:22:33] 2026-01-27 13:22:33,460 | INFO     | [monitor] control thread has ended
[2026-01-27 08:22:33] 2026-01-27 13:22:33,577 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:22:33] 2026-01-27 13:22:33,581 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:22:33] 2026-01-27 13:22:33,587 [wrapper] pilotpid: 16452
[2026-01-27 08:22:33] 2026-01-27 13:22:33,591 [wrapper] Pilot exit status: 0
[2026-01-27 08:22:33] 2026-01-27 13:22:33,611 [wrapper] pandaids: 6984063728 6984063728
[2026-01-27 08:22:33] 2026-01-27 13:22:33,652 [wrapper] cleanup supervisor_pilot 29327 16453
[2026-01-27 08:22:33] 2026-01-27 13:22:33,658 [wrapper] Test setup, not cleaning
[2026-01-27 08:22:33] 2026-01-27 13:22:33,662 [wrapper] apfmon messages muted
[2026-01-27 08:22:33] 2026-01-27 13:22:33,667 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:22:33] 2026-01-27 13:22:33,671 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:22:33]  *** Error codes and diagnostics ***
[2026-01-27 08:22:33]     "exeErrorCode": 0,
[2026-01-27 08:22:33]     "exeErrorDiag": "",
[2026-01-27 08:22:33]     "pilotErrorCode": 0,
[2026-01-27 08:22:33]     "pilotErrorDiag": "",
[2026-01-27 08:22:33]  *** Listing of results directory ***
[2026-01-27 08:22:33] total 1142704
[2026-01-27 08:22:33] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas      5111 Jan 26 04:48 queuedata.json
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas    584422 Jan 26 04:48 pilot3.tar.gz
[2026-01-27 08:22:33] -rwx------ 1 boincer umatlas     36322 Jan 26 04:48 runpilot2-wrapper.sh
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas       100 Jan 27 04:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:22:33] -rwxr-xr-x 1 boincer umatlas      7986 Jan 27 04:50 run_atlas
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas       105 Jan 27 04:50 job.xml
[2026-01-27 08:22:33] -rw-r--r-- 3 boincer umatlas 492758660 Jan 27 04:50 EVNT.48317869._000073.pool.root.1
[2026-01-27 08:22:33] -rw-r--r-- 3 boincer umatlas 492758660 Jan 27 04:50 ATLAS.root_0
[2026-01-27 08:22:33] -rw-r--r-- 2 boincer umatlas    597758 Jan 27 04:50 input.tar.gz
[2026-01-27 08:22:33] -rw-r--r-- 2 boincer umatlas     15845 Jan 27 04:50 start_atlas.sh
[2026-01-27 08:22:33] drwxrwx--x 2 boincer umatlas      4096 Jan 27 04:50 shared
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas         0 Jan 27 04:50 boinc_lockfile
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas      2514 Jan 27 06:31 pandaJob.out
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas        57 Jan 27 06:31 setup.sh.local
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas   1002853 Jan 27 06:31 agis_schedconf.cvmfs.json
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas       431 Jan 27 06:31 workernode_map.json
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas      5911 Jan 27 08:19 init_data.xml
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas 178070823 Jan 27 08:21 HITS.48317872._003633.pool.root.1
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas       532 Jan 27 08:21 boinc_task_state.xml
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas      1047 Jan 27 08:21 memory_monitor_summary.json
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas   1516246 Jan 27 08:22 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas    361136 Jan 27 08:22 log.48317872._003633.job.log.tgz.1
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas      6404 Jan 27 08:22 heartbeat.json
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas      8192 Jan 27 08:22 boinc_mmap_file
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas        28 Jan 27 08:22 wrapper_checkpoint.txt
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas       745 Jan 27 08:22 pilotlog.txt
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas        96 Jan 27 08:22 pilot_heartbeat.json
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas    937578 Jan 27 08:22 log.48317872._003633.job.log.1
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas       357 Jan 27 08:22 output.list
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas       620 Jan 27 08:22 runtime_log
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas   1320960 Jan 27 08:22 result.tar.gz
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas      9426 Jan 27 08:22 runtime_log.err
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas       783 Jan 27 08:22 9mGNDmLOY48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAy2KDmwqc66n.diag
[2026-01-27 08:22:33] -rw-r--r-- 1 boincer umatlas     23367 Jan 27 08:22 stderr.txt
[2026-01-27 08:22:33] HITS file was successfully produced:
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas 178070823 Jan 27 08:21 shared/HITS.pool.root.1
[2026-01-27 08:22:33]  *** Contents of shared directory: ***
[2026-01-27 08:22:33] total 657008
[2026-01-27 08:22:33] -rw-r--r-- 3 boincer umatlas 492758660 Jan 27 04:50 ATLAS.root_0
[2026-01-27 08:22:33] -rw-r--r-- 2 boincer umatlas    597758 Jan 27 04:50 input.tar.gz
[2026-01-27 08:22:33] -rw-r--r-- 2 boincer umatlas     15845 Jan 27 04:50 start_atlas.sh
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas 178070823 Jan 27 08:21 HITS.pool.root.1
[2026-01-27 08:22:33] -rw------- 1 boincer umatlas   1320960 Jan 27 08:22 result.tar.gz
08:22:35 (12306): run_atlas exited; CPU time 49111.418537
08:22:35 (12306): called boinc_finish(0)

</stderr_txt>
]]>

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