Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:45:06 (991): wrapper (7.7.26015): starting
04:45:06 (991): wrapper: running run_atlas (--nthreads 12)
[2026-01-27 04:45:06] Arguments: --nthreads 12
[2026-01-27 04:45:06] Threads: 12
[2026-01-27 04:45:06] Checking for CVMFS
[2026-01-27 04:45:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:45:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:45:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:45:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:45:07] 2.11.2.0 10903 95263 98148 155579 0 52 14708258 20275200 1 130560 0 34708074 99.846 7410598 33588 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-27 04:45:07] CVMFS is ok
[2026-01-27 04:45:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:45:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 04:45:07] Further information can be found at the LHC@home message board.
[2026-01-27 04:45:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:45:07] Checking for apptainer binary...
[2026-01-27 04:45:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:45:07] Running /usr/bin/apptainer --version
[2026-01-27 04:45:07] apptainer version 1.3.2-1.el7
[2026-01-27 04:45:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:45:08] c-205-22.aglt2.org
[2026-01-27 04:45:08] apptainer works
[2026-01-27 04:45:08] Set ATHENA_PROC_NUMBER=12
[2026-01-27 04:45:08] Set ATHENA_CORE_NUMBER=12
[2026-01-27 04:45:08] Starting ATLAS job with PandaID=6984229438
[2026-01-27 04:45:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 06:04:42]  *** The last 200 lines of the pilot log: ***
[2026-01-27 06:04:42]  filetype=log
[2026-01-27 06:04:42]  guid=4d57ac28-d8f4-402a-b0e7-1b39de9a6164
[2026-01-27 06:04:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 06:04:42]  is_altstaged=None
[2026-01-27 06:04:42]  is_tar=False
[2026-01-27 06:04:42]  lfn=log.48317952._001458.job.log.tgz.1
[2026-01-27 06:04:42]  mtime=0
[2026-01-27 06:04:42]  protocol_id=None
[2026-01-27 06:04:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 06:04:42]  replicas=None
[2026-01-27 06:04:42]  scope=mc23_13p6TeV
[2026-01-27 06:04:42]  status=None
[2026-01-27 06:04:42]  status_code=0
[2026-01-27 06:04:42]  storage_token=
[2026-01-27 06:04:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6984229438/log.48317952._001458.job.log.tgz.1
[2026-01-27 06:04:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/94/log.48317952._001458.job.log.tgz.1
[2026-01-27 06:04:42]  workdir=None
[2026-01-27 06:04:42] ]
[2026-01-27 06:04:42] 2026-01-27 11:03:49,110 | INFO     | transferring file log.48317952._001458.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6984229438/log.48317952._001458.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-27 06:04:42] 2026-01-27 11:03:49,110 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6984229438/log.48317952._001458.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317952._001458.job
[2026-01-27 06:04:42] 2026-01-27 11:03:49,132 | INFO     | adding to output.list: log.48317952._001458.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/94/log.48317952._001458.job.log.tg
[2026-01-27 06:04:42] 2026-01-27 11:03:49,133 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 06:04:42] 2026-01-27 11:03:49,133 | INFO     | summary of transferred files:
[2026-01-27 06:04:42] 2026-01-27 11:03:49,133 | INFO     |  -- lfn=log.48317952._001458.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 06:04:42] 2026-01-27 11:03:49,133 | INFO     | stage-out finished correctly
[2026-01-27 06:04:42] 2026-01-27 11:03:50,662 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 06:04:42] 2026-01-27 11:03:50,691 | INFO     | time since job start (4701s) is within the limit (349056.0s)
[2026-01-27 06:04:42] 2026-01-27 11:03:50,926 | INFO     | monitor loop #358: job 0:6984229438 is in state 'finished'
[2026-01-27 06:04:42] 2026-01-27 11:03:50,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,378 | INFO     | job 6984229438 has state=finished
[2026-01-27 06:04:42] 2026-01-27 11:03:52,378 | INFO     | preparing for final server update for job 6984229438 in state='finished'
[2026-01-27 06:04:42] 2026-01-27 11:03:52,378 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6984229438/jobReport.json
[2026-01-27 06:04:42] 2026-01-27 11:03:52,381 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-27 06:04:42] 2026-01-27 11:03:52,381 | INFO     | this job has now completed (state=finished)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,382 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,382 | INFO     | log transfer has been attempted: DONE
[2026-01-27 06:04:42] 2026-01-27 11:03:52,382 | INFO     | job 6984229438 has finished - writing final server update
[2026-01-27 06:04:42] 2026-01-27 11:03:52,382 | INFO     | total number of processed events: 400 (read)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6984229438/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,385 | INFO     | extracted standard info from prmon json
[2026-01-27 06:04:42] 2026-01-27 11:03:52,386 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 06:04:42] 2026-01-27 11:03:52,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 06:04:42] 2026-01-27 11:03:52,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 06:04:42] 2026-01-27 11:03:52,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 06:04:42] 2026-01-27 11:03:52,388 | INFO     | fitting pss+swap vs Time
[2026-01-27 06:04:42] 2026-01-27 11:03:52,388 | INFO     | sum of square deviations: 106336877.5
[2026-01-27 06:04:42] 2026-01-27 11:03:52,388 | INFO     | sum of deviations: -7306909705.0
[2026-01-27 06:04:42] 2026-01-27 11:03:52,388 | INFO     | mean x: 1769509562.5
[2026-01-27 06:04:42] 2026-01-27 11:03:52,388 | INFO     | mean y: 2752459.314285714
[2026-01-27 06:04:42] 2026-01-27 11:03:52,388 | INFO     | intersect: 121594122257.82614
[2026-01-27 06:04:42] 2026-01-27 11:03:52,389 | INFO     | chi2: 0.06125030999729832
[2026-01-27 06:04:42] 2026-01-27 11:03:52,389 | INFO     | current memory leak: -68.71 B/s (using 70 data points, chi2=0.06)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,389 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,389 | INFO     | ..............................
[2026-01-27 06:04:42] 2026-01-27 11:03:52,389 | INFO     | . Timing measurements:
[2026-01-27 06:04:42] 2026-01-27 11:03:52,389 | INFO     | . get job = 0 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | . initial setup = 7 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | . payload setup = 7 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | . stage-in = 0 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | . payload execution = 4677 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | . stage-out = 0 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | . log creation = 0 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,390 | INFO     | ..............................
[2026-01-27 06:04:42] 2026-01-27 11:03:52,697 | INFO     | time since job start (4703s) is within the limit (349056.0s)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,745 | INFO     | 
[2026-01-27 06:04:42] 2026-01-27 11:03:52,745 | INFO     | job summary report
[2026-01-27 06:04:42] 2026-01-27 11:03:52,746 | INFO     | --------------------------------------------------
[2026-01-27 06:04:42] 2026-01-27 11:03:52,746 | INFO     | PanDA job id: 6984229438
[2026-01-27 06:04:42] 2026-01-27 11:03:52,746 | INFO     | task id: 48317952
[2026-01-27 06:04:42] 2026-01-27 11:03:52,746 | INFO     | errors: (none)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,746 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 06:04:42] 2026-01-27 11:03:52,746 | INFO     | pilot state: finished 
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | transexitcode: 0
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | exeerrorcode: 0
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | exeerrordiag: 
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | exitcode: 0
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | exitmsg: OK
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | cpuconsumptiontime: 50319 s
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | nevents: 400
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | neventsw: 0
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | pid: 9524
[2026-01-27 06:04:42] 2026-01-27 11:03:52,747 | INFO     | pgrp: 9524
[2026-01-27 06:04:42] 2026-01-27 11:03:52,748 | INFO     | corecount: 12
[2026-01-27 06:04:42] 2026-01-27 11:03:52,748 | INFO     | event service: False
[2026-01-27 06:04:42] 2026-01-27 11:03:52,748 | INFO     | sizes: {0: 2284237, 11: 2284237, 4687: 2310393, 4688: 2319391, 4690: 2319447, 4692: 2319641}
[2026-01-27 06:04:42] 2026-01-27 11:03:52,748 | INFO     | --------------------------------------------------
[2026-01-27 06:04:42] 2026-01-27 11:03:52,748 | INFO     | 
[2026-01-27 06:04:42] 2026-01-27 11:03:52,748 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-27 06:04:42] 2026-01-27 11:03:52,770 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,771 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,771 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,771 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,771 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,774 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,774 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 06:04:42] 2026-01-27 11:03:52,774 | INFO     | job 6984229438 has completed (purged errors)
[2026-01-27 06:04:42] 2026-01-27 11:03:52,774 | INFO     | overall cleanup function is called
[2026-01-27 06:04:42] 2026-01-27 11:03:53,782 | INFO     | --- collectZombieJob: --- 10, [9524]
[2026-01-27 06:04:42] 2026-01-27 11:03:53,783 | INFO     | zombie collector waiting for pid 9524
[2026-01-27 06:04:42] 2026-01-27 11:03:53,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 06:04:42] 2026-01-27 11:03:53,783 | INFO     | collected zombie processes
[2026-01-27 06:04:42] 2026-01-27 11:03:53,784 | INFO     | will attempt to kill all subprocesses of pid=9524
[2026-01-27 06:04:42] 2026-01-27 11:03:53,854 | INFO     | PID=5139 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 06:04:42] 2026-01-27 11:03:53,906 | INFO     | process IDs to be killed: [9524] (in reverse order)
[2026-01-27 06:04:42] 2026-01-27 11:03:53,956 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 06:04:42] 2026-01-27 11:03:53,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 06:04:42] 2026-01-27 11:03:53,960 | INFO     | did not find any defunct processes belonging to 9524
[2026-01-27 06:04:42] 2026-01-27 11:03:53,963 | INFO     | did not find any defunct processes belonging to 9524
[2026-01-27 06:04:42] 2026-01-27 11:03:53,964 | INFO     | ready for new job
[2026-01-27 06:04:42] 2026-01-27 11:03:53,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 06:04:42] 2026-01-27 11:03:53,965 | INFO     | **************************************
[2026-01-27 06:04:42] 2026-01-27 11:03:53,966 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 06:04:42] 2026-01-27 11:03:53,966 | INFO     | **************************************
[2026-01-27 06:04:42] 2026-01-27 11:03:53,966 | INFO     | 
[2026-01-27 06:04:42] 2026-01-27 11:03:53,967 | INFO     | architecture information:
[2026-01-27 06:04:42] 2026-01-27 11:03:53,967 | INFO     | executing command: cat /etc/os-release
[2026-01-27 06:04:42] 2026-01-27 11:03:53,982 | INFO     | cat /etc/os-release:
[2026-01-27 06:04:42] NAME="CentOS Linux"
[2026-01-27 06:04:42] VERSION="7 (Core)"
[2026-01-27 06:04:42] ID="centos"
[2026-01-27 06:04:42] ID_LIKE="rhel fedora"
[2026-01-27 06:04:42] VERSION_ID="7"
[2026-01-27 06:04:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 06:04:42] ANSI_COLOR="0;31"
[2026-01-27 06:04:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 06:04:42] HOME_URL="https://www.centos.org/"
[2026-01-27 06:04:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 06:04:42] 
[2026-01-27 06:04:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 06:04:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 06:04:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 06:04:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 06:04:42] 
[2026-01-27 06:04:42] 2026-01-27 11:03:53,982 | INFO     | **************************************
[2026-01-27 06:04:42] 2026-01-27 11:03:54,485 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-27 06:04:42] 2026-01-27 11:03:54,503 | INFO     | sufficient remaining disk space (28806479872 B)
[2026-01-27 06:04:42] 2026-01-27 11:03:54,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 06:04:42] 2026-01-27 11:03:54,504 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 06:04:42] 2026-01-27 11:03:54,504 | INFO     | update_server=False
[2026-01-27 06:04:42] 2026-01-27 11:03:54,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 06:04:42] 2026-01-27 11:03:54,504 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 06:04:42] 2026-01-27 11:03:54,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 06:04:42] 2026-01-27 11:03:54,505 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 06:04:42] 2026-01-27 11:03:54,505 | INFO     | aborting loop
[2026-01-27 06:04:42] 2026-01-27 11:03:54,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 06:04:42] 2026-01-27 11:03:54,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 06:04:42] 2026-01-27 11:03:54,624 | INFO     | all data control threads have been joined
[2026-01-27 06:04:42] 2026-01-27 11:03:54,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 06:04:42] 2026-01-27 11:03:54,982 | INFO     | all job control threads have been joined
[2026-01-27 06:04:42] 2026-01-27 11:03:55,215 | INFO     | all payload control threads have been joined
[2026-01-27 06:04:42] 2026-01-27 11:03:55,510 | INFO     | [job] retrieve thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:55,511 | INFO     | [job] job monitor thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:55,629 | INFO     | [data] control thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:55,654 | INFO     | [job] validate thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:55,794 | INFO     | [payload] validate_post thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:55,825 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:55,987 | INFO     | [job] control thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:56,074 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:56,166 | INFO     | [payload] failed_post thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:56,220 | INFO     | [payload] control thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:56,266 | INFO     | [data] copytool_in thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:56,733 | INFO     | [data] copytool_out thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:56,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 06:04:42] 2026-01-27 11:03:56,816 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:03:57,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 06:04:42] 2026-01-27 11:03:58,482 | INFO     | [job] queue monitor thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:04:00,750 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:04:05,546 | INFO     | job.realtimelogging is not enabled
[2026-01-27 06:04:42] 2026-01-27 11:04:06,551 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 06:04:42] 2026-01-27 11:04:35,986 | INFO     | [monitor] cgroup control has ended
[2026-01-27 06:04:42] 2026-01-27 11:04:37,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140054683731776)>', '<ExcThread(monitor, started 140053934216960)>']
[2026-01-27 06:04:42] 2026-01-27 11:04:37,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 06:04:42] 2026-01-27 11:04:37,719 | INFO     | [monitor] control thread has ended
[2026-01-27 06:04:42] 2026-01-27 11:04:42,404 | INFO     | all workflow threads have been joined
[2026-01-27 06:04:42] 2026-01-27 11:04:42,404 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 06:04:42] 2026-01-27 11:04:42,405 | INFO     | traces error code: 0
[2026-01-27 06:04:42] 2026-01-27 11:04:42,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 06:04:42] 2026-01-27 11:04:42,488 [wrapper] ==== pilot stdout END ====
[2026-01-27 06:04:42] 2026-01-27 11:04:42,492 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 06:04:42] 2026-01-27 11:04:42,496 [wrapper] pilotpid: 5139
[2026-01-27 06:04:42] 2026-01-27 11:04:42,500 [wrapper] Pilot exit status: 0
[2026-01-27 06:04:42] 2026-01-27 11:04:42,514 [wrapper] pandaids: 6984229438
[2026-01-27 06:04:42] 2026-01-27 11:04:42,561 [wrapper] cleanup supervisor_pilot 31496 5140
[2026-01-27 06:04:42] 2026-01-27 11:04:42,565 [wrapper] Test setup, not cleaning
[2026-01-27 06:04:42] 2026-01-27 11:04:42,569 [wrapper] apfmon messages muted
[2026-01-27 06:04:42] 2026-01-27 11:04:42,573 [wrapper] ==== wrapper stdout END ====
[2026-01-27 06:04:42] 2026-01-27 11:04:42,577 [wrapper] ==== wrapper stderr END ====
[2026-01-27 06:04:42]  *** Error codes and diagnostics ***
[2026-01-27 06:04:42]     "exeErrorCode": 0,
[2026-01-27 06:04:42]     "exeErrorDiag": "",
[2026-01-27 06:04:42]     "pilotErrorCode": 0,
[2026-01-27 06:04:42]     "pilotErrorDiag": "",
[2026-01-27 06:04:42]  *** Listing of results directory ***
[2026-01-27 06:04:42] total 667124
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas    584422 Jan 26 06:54 pilot3.tar.gz
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas      5111 Jan 26 06:54 queuedata.json
[2026-01-27 06:04:42] -rwx------ 1 boincer umatlas     36322 Jan 26 06:54 runpilot2-wrapper.sh
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas       100 Jan 27 04:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 06:04:42] -rwxr-xr-x 1 boincer umatlas      7986 Jan 27 04:45 run_atlas
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas       105 Jan 27 04:45 job.xml
[2026-01-27 06:04:42] -rw-r--r-- 2 boincer umatlas 494869117 Jan 27 04:45 EVNT.48317949._000029.pool.root.1
[2026-01-27 06:04:42] -rw-r--r-- 2 boincer umatlas     15845 Jan 27 04:45 start_atlas.sh
[2026-01-27 06:04:42] drwxrwx--x 2 boincer umatlas      4096 Jan 27 04:45 shared
[2026-01-27 06:04:42] -rw-r--r-- 2 boincer umatlas    597756 Jan 27 04:45 input.tar.gz
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas         0 Jan 27 04:45 boinc_lockfile
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas      2519 Jan 27 04:45 pandaJob.out
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas        57 Jan 27 04:45 setup.sh.local
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas   1002845 Jan 27 04:45 agis_schedconf.cvmfs.json
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas   1516246 Jan 27 04:45 agis_ddmendpoints.agis.ALL.json
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas       434 Jan 27 04:45 workernode_map.json
[2026-01-27 06:04:42] drwx------ 5 boincer umatlas      4096 Jan 27 04:45 pilot3
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas      5953 Jan 27 06:00 init_data.xml
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas 182125290 Jan 27 06:03 HITS.48317952._001458.pool.root.1
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas        95 Jan 27 06:03 pilot_heartbeat.json
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas      1057 Jan 27 06:03 memory_monitor_summary.json
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas       530 Jan 27 06:03 boinc_task_state.xml
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas    414975 Jan 27 06:03 log.48317952._001458.job.log.tgz.1
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas      6409 Jan 27 06:03 heartbeat.json
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas      8192 Jan 27 06:04 boinc_mmap_file
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas        27 Jan 27 06:04 wrapper_checkpoint.txt
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas      4620 Jan 27 06:04 pilotlog.txt
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas    681594 Jan 27 06:04 log.48317952._001458.job.log.1
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas       357 Jan 27 06:04 output.list
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas       620 Jan 27 06:04 runtime_log
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas   1116160 Jan 27 06:04 result.tar.gz
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas      9343 Jan 27 06:04 runtime_log.err
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas       659 Jan 27 06:04 cTZLDm7La48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnn9KDmoNSLyn.diag
[2026-01-27 06:04:42] -rw-r--r-- 1 boincer umatlas     21272 Jan 27 06:04 stderr.txt
[2026-01-27 06:04:42] HITS file was successfully produced:
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas 182125290 Jan 27 06:03 shared/HITS.pool.root.1
[2026-01-27 06:04:42]  *** Contents of shared directory: ***
[2026-01-27 06:04:42] total 662832
[2026-01-27 06:04:42] -rw-r--r-- 2 boincer umatlas 494869117 Jan 27 04:45 ATLAS.root_0
[2026-01-27 06:04:42] -rw-r--r-- 2 boincer umatlas     15845 Jan 27 04:45 start_atlas.sh
[2026-01-27 06:04:42] -rw-r--r-- 2 boincer umatlas    597756 Jan 27 04:45 input.tar.gz
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas 182125290 Jan 27 06:03 HITS.pool.root.1
[2026-01-27 06:04:42] -rw------- 1 boincer umatlas   1116160 Jan 27 06:04 result.tar.gz
06:04:44 (991): run_atlas exited; CPU time 50301.477205
06:04:44 (991): called boinc_finish(0)

</stderr_txt>
]]>

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