Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:20:47 (2358408): wrapper (7.7.26015): starting
20:20:47 (2358408): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 20:20:47] Arguments: --nthreads 2
[2026-01-27 20:20:47] Threads: 2
[2026-01-27 20:20:47] Checking for CVMFS
[2026-01-27 20:20:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 20:20:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 20:20:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 20:20:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 20:20:48] 2.9.2.0 1326838 10005 62320 155597 3 49 25561352 36864001 0 130560 0 3080356 99.980 330436 4402 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 20:20:48] CVMFS is ok
[2026-01-27 20:20:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 20:20:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 20:20:48] Further information can be found at the LHC@home message board.
[2026-01-27 20:20:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 20:20:48] Checking for apptainer binary...
[2026-01-27 20:20:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 20:20:48] Running /usr/bin/apptainer --version
[2026-01-27 20:20:48] apptainer version 1.4.1-1.1
[2026-01-27 20:20:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 20:20:48] thA334a
[2026-01-27 20:20:48] apptainer works
[2026-01-27 20:20:48] Set ATHENA_PROC_NUMBER=2
[2026-01-27 20:20:48] Set ATHENA_CORE_NUMBER=2
[2026-01-27 20:20:48] Starting ATLAS job with PandaID=6984062003
[2026-01-27 20:20:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 22:25:19]  *** The last 200 lines of the pilot log: ***
[2026-01-27 22:25:19] 2026-01-27 21:24:17,393 | INFO     | will attempt to kill all subprocesses of pid=2366842
[2026-01-27 22:25:19] 2026-01-27 21:24:17,424 | INFO     | process IDs to be killed: [2366842] (in reverse order)
[2026-01-27 22:25:19] 2026-01-27 21:24:17,443 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 22:25:19] 2026-01-27 21:24:17,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 22:25:19] 2026-01-27 21:24:17,444 | INFO     | did not find any defunct processes belonging to 2366842
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | did not find any defunct processes belonging to 2366842
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | ready for new job
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | **************************************
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | **************************************
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | 
[2026-01-27 22:25:19] 2026-01-27 21:24:17,445 | INFO     | architecture information:
[2026-01-27 22:25:19] 2026-01-27 21:24:17,446 | INFO     | executing command: cat /etc/os-release
[2026-01-27 22:25:19] 2026-01-27 21:24:17,453 | INFO     | cat /etc/os-release:
[2026-01-27 22:25:19] NAME="CentOS Linux"
[2026-01-27 22:25:19] VERSION="7 (Core)"
[2026-01-27 22:25:19] ID="centos"
[2026-01-27 22:25:19] ID_LIKE="rhel fedora"
[2026-01-27 22:25:19] VERSION_ID="7"
[2026-01-27 22:25:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 22:25:19] ANSI_COLOR="0;31"
[2026-01-27 22:25:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 22:25:19] HOME_URL="https://www.centos.org/"
[2026-01-27 22:25:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 22:25:19] 
[2026-01-27 22:25:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 22:25:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 22:25:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 22:25:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 22:25:19] 
[2026-01-27 22:25:19] 2026-01-27 21:24:17,453 | INFO     | **************************************
[2026-01-27 22:25:19] 2026-01-27 21:24:17,957 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 22:25:19] 2026-01-27 21:24:17,968 | INFO     | sufficient remaining disk space (499090718720 B)
[2026-01-27 22:25:19] 2026-01-27 21:24:17,968 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 22:25:19] 2026-01-27 21:24:17,968 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 22:25:19] 2026-01-27 21:24:17,969 | INFO     | update_server=False
[2026-01-27 22:25:19] 2026-01-27 21:24:17,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 22:25:19] 2026-01-27 21:24:17,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 22:25:19] 2026-01-27 21:24:17,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 22:25:19] 2026-01-27 21:24:18,539 | INFO     | all data control threads have been joined
[2026-01-27 22:25:19] 2026-01-27 21:24:18,974 | INFO     | [job] queue monitor thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:18,975 | INFO     | [job] retrieve thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,007 | INFO     | all job control threads have been joined
[2026-01-27 22:25:19] 2026-01-27 21:24:19,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 22:25:19] 2026-01-27 21:24:19,030 | INFO     | [payload] validate_post thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,376 | INFO     | [job] validate thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,441 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,448 | INFO     | all payload control threads have been joined
[2026-01-27 22:25:19] 2026-01-27 21:24:19,481 | WARNING  | process 2366842 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 22:25:19] 2026-01-27 21:24:19,502 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 22:25:19] 2026-01-27 21:24:19,503 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 22:25:19] 2026-01-27 21:24:19,503 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 22:25:19] 2026-01-27 21:24:19,503 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 22:25:19] 2026-01-27 21:24:19,503 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6984062003/payload.stdout) since it has not been created yet
[2026-01-27 22:25:19] 2026-01-27 21:24:19,503 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 22:25:19] 2026-01-27 21:24:19,511 | INFO     | sufficient remaining disk space (499090718720 B)
[2026-01-27 22:25:19] 2026-01-27 21:24:19,512 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 22:25:19] 2026-01-27 21:24:19,512 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6984062003/HITS.48317872._003018.pool.root.1 since it does not exist
[2026-01-27 22:25:19] 2026-01-27 21:24:19,540 | INFO     | number of running child processes to parent process 2366842: 1
[2026-01-27 22:25:19] 2026-01-27 21:24:19,540 | INFO     | maximum number of monitored processes: 6
[2026-01-27 22:25:19] 2026-01-27 21:24:19,540 | INFO     | aborting job monitoring since job object (job id=6984062003) has expired
[2026-01-27 22:25:19] 2026-01-27 21:24:19,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 22:25:19] 2026-01-27 21:24:19,540 | INFO     | will abort loop
[2026-01-27 22:25:19] 2026-01-27 21:24:19,545 | INFO     | [data] control thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,597 | INFO     | [data] copytool_in thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,631 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:19,791 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:20,013 | INFO     | [job] control thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:20,054 | INFO     | [payload] failed_post thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:20,454 | INFO     | [payload] control thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:20,544 | INFO     | [job] job monitor thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:21,018 | INFO     | [data] copytool_out thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:21,976 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:28,395 | INFO     | job.realtimelogging is not enabled
[2026-01-27 22:25:19] 2026-01-27 21:24:29,402 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 22:25:19] 2026-01-27 21:24:48,750 | INFO     | PID=2362433 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 22:25:19] 2026-01-27 21:24:48,750 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 22:25:19] 2026-01-27 21:24:48,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 22:25:19] 2026-01-27 21:24:48,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 22:25:19] 2026-01-27 21:25:13,755 | INFO     | [monitor] cgroup control has ended
[2026-01-27 22:25:19] 2026-01-27 21:25:13,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220413896512)>', '<ExcThread(monitor, started 140219466639104)>']
[2026-01-27 22:25:19] 2026-01-27 21:25:13,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 22:25:19] 2026-01-27 21:25:13,881 | INFO     | [monitor] control thread has ended
[2026-01-27 22:25:19] 2026-01-27 21:25:18,872 | INFO     | all workflow threads have been joined
[2026-01-27 22:25:19] 2026-01-27 21:25:18,873 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 22:25:19] 2026-01-27 21:25:18,874 | INFO     | traces error code: 0
[2026-01-27 22:25:19] 2026-01-27 21:25:18,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 22:25:19] 2026-01-27 21:25:18,917 [wrapper] ==== pilot stdout END ====
[2026-01-27 22:25:19] 2026-01-27 21:25:18,919 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 22:25:19] 2026-01-27 21:25:18,921 [wrapper] pilotpid: 2362433
[2026-01-27 22:25:19] 2026-01-27 21:25:18,923 [wrapper] Pilot exit status: 0
[2026-01-27 22:25:19] 2026-01-27 21:25:18,929 [wrapper] pandaids: 6984062003
[2026-01-27 22:25:19] 2026-01-27 21:25:18,941 [wrapper] cleanup supervisor_pilot 2371979 2362434
[2026-01-27 22:25:19] 2026-01-27 21:25:18,943 [wrapper] Test setup, not cleaning
[2026-01-27 22:25:19] 2026-01-27 21:25:18,945 [wrapper] apfmon messages muted
[2026-01-27 22:25:19] 2026-01-27 21:25:18,947 [wrapper] ==== wrapper stdout END ====
[2026-01-27 22:25:19] 2026-01-27 21:25:18,949 [wrapper] ==== wrapper stderr END ====
[2026-01-27 22:25:19]  *** Error codes and diagnostics ***
[2026-01-27 22:25:19]     "exeErrorCode": 0,
[2026-01-27 22:25:19]     "exeErrorDiag": "",
[2026-01-27 22:25:19]     "pilotErrorCode": 0,
[2026-01-27 22:25:19]     "pilotErrorDiag": "",
[2026-01-27 22:25:19]  *** Listing of results directory ***
[2026-01-27 22:25:19] total 668392
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc    584422 Jan 26 08:37 pilot3.tar.gz
[2026-01-27 22:25:19] -rwx------ 1 boinc boinc     36322 Jan 26 08:40 runpilot2-wrapper.sh
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc      5111 Jan 26 08:43 queuedata.json
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc       100 Jan 27 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 22:25:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 20:20 run_atlas
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc       105 Jan 27 20:20 job.xml
[2026-01-27 22:25:19] -rw-r--r-- 2 boinc boinc 491787246 Jan 27 20:20 EVNT.48317869._000061.pool.root.1
[2026-01-27 22:25:19] -rw-r--r-- 2 boinc boinc    597755 Jan 27 20:20 input.tar.gz
[2026-01-27 22:25:19] -rw-r--r-- 2 boinc boinc     15845 Jan 27 20:20 start_atlas.sh
[2026-01-27 22:25:19] drwxrwx--x 2 boinc boinc      4096 Jan 27 20:20 shared
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc         0 Jan 27 20:20 boinc_setup_complete
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc      6207 Jan 27 20:20 init_data.xml
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc         0 Jan 27 20:20 boinc_lockfile
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc      2515 Jan 27 20:20 pandaJob.out
[2026-01-27 22:25:19] -rw------- 1 boinc boinc   1005244 Jan 27 20:20 agis_schedconf.cvmfs.json
[2026-01-27 22:25:19] -rw------- 1 boinc boinc   1516246 Jan 27 20:20 agis_ddmendpoints.agis.ALL.json
[2026-01-27 22:25:19] -rw------- 1 boinc boinc       420 Jan 27 20:21 workernode_map.json
[2026-01-27 22:25:19] drwx------ 5 boinc boinc      4096 Jan 27 20:21 pilot3
[2026-01-27 22:25:19] -rw------- 1 boinc boinc 186065376 Jan 27 22:23 HITS.48317872._003018.pool.root.1
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc       530 Jan 27 22:24 boinc_task_state.xml
[2026-01-27 22:25:19] -rw------- 1 boinc boinc      1011 Jan 27 22:24 memory_monitor_summary.json
[2026-01-27 22:25:19] -rw------- 1 boinc boinc    260725 Jan 27 22:24 log.48317872._003018.job.log.tgz.1
[2026-01-27 22:25:19] -rw------- 1 boinc boinc      6294 Jan 27 22:24 heartbeat.json
[2026-01-27 22:25:19] -rw------- 1 boinc boinc        95 Jan 27 22:24 pilot_heartbeat.json
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc      8192 Jan 27 22:25 boinc_mmap_file
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc        27 Jan 27 22:25 wrapper_checkpoint.txt
[2026-01-27 22:25:19] -rw------- 1 boinc boinc      6321 Jan 27 22:25 pilotlog.txt
[2026-01-27 22:25:19] -rw------- 1 boinc boinc   1064645 Jan 27 22:25 log.48317872._003018.job.log.1
[2026-01-27 22:25:19] -rw------- 1 boinc boinc       357 Jan 27 22:25 output.list
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc       620 Jan 27 22:25 runtime_log
[2026-01-27 22:25:19] -rw------- 1 boinc boinc   1341440 Jan 27 22:25 result.tar.gz
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc      8901 Jan 27 22:25 runtime_log.err
[2026-01-27 22:25:19] -rw------- 1 boinc boinc       658 Jan 27 22:25 SR0NDmcOW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQS9KDmYQyDGm.diag
[2026-01-27 22:25:19] -rw-r--r-- 1 boinc boinc     12075 Jan 27 22:25 stderr.txt
[2026-01-27 22:25:19] HITS file was successfully produced:
[2026-01-27 22:25:19] -rw------- 1 boinc boinc 186065376 Jan 27 22:23 shared/HITS.pool.root.1
[2026-01-27 22:25:19]  *** Contents of shared directory: ***
[2026-01-27 22:25:19] total 663892
[2026-01-27 22:25:19] -rw-r--r-- 2 boinc boinc 491787246 Jan 27 20:20 ATLAS.root_0
[2026-01-27 22:25:19] -rw-r--r-- 2 boinc boinc    597755 Jan 27 20:20 input.tar.gz
[2026-01-27 22:25:19] -rw-r--r-- 2 boinc boinc     15845 Jan 27 20:20 start_atlas.sh
[2026-01-27 22:25:19] -rw------- 1 boinc boinc 186065376 Jan 27 22:23 HITS.pool.root.1
[2026-01-27 22:25:19] -rw------- 1 boinc boinc   1341440 Jan 27 22:25 result.tar.gz
22:25:20 (2358408): run_atlas exited; CPU time 14382.286413
22:25:20 (2358408): called boinc_finish(0)

</stderr_txt>
]]>

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