Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:21:52 (1497480): wrapper (7.7.26015): starting
17:21:52 (1497480): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 17:21:52] Arguments: --nthreads 4
[2026-01-27 17:21:52] Threads: 4
[2026-01-27 17:21:52] Checking for CVMFS
[2026-01-27 17:21:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 17:21:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 17:21:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 17:21:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 17:21:52] 2.9.2.0 3097 7621 99284 155591 0 188 24808334 36864000 0 130560 0 4222764 99.988 275588 6388 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 17:21:52] CVMFS is ok
[2026-01-27 17:21:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 17:21:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 17:21:52] Further information can be found at the LHC@home message board.
[2026-01-27 17:21:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 17:21:52] Checking for apptainer binary...
[2026-01-27 17:21:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 17:21:52] Running /usr/bin/apptainer --version
[2026-01-27 17:21:52] apptainer version 1.4.1-1.1
[2026-01-27 17:21:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 17:21:52] thA338
[2026-01-27 17:21:52] apptainer works
[2026-01-27 17:21:53] Set ATHENA_PROC_NUMBER=4
[2026-01-27 17:21:53] Set ATHENA_CORE_NUMBER=4
[2026-01-27 17:21:53] Starting ATLAS job with PandaID=6984225399
[2026-01-27 17:21:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 18:35:16]  *** The last 200 lines of the pilot log: ***
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | job 6984225399 has completed (purged errors)
[2026-01-27 18:35:16] 2026-01-27 17:34:46,113 | INFO     | overall cleanup function is called
[2026-01-27 18:35:16] 2026-01-27 17:34:47,120 | INFO     | --- collectZombieJob: --- 10, [1505771]
[2026-01-27 18:35:16] 2026-01-27 17:34:47,120 | INFO     | zombie collector waiting for pid 1505771
[2026-01-27 18:35:16] 2026-01-27 17:34:47,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 18:35:16] 2026-01-27 17:34:47,121 | INFO     | collected zombie processes
[2026-01-27 18:35:16] 2026-01-27 17:34:47,121 | INFO     | will attempt to kill all subprocesses of pid=1505771
[2026-01-27 18:35:16] 2026-01-27 17:34:47,164 | INFO     | process IDs to be killed: [1505771] (in reverse order)
[2026-01-27 18:35:16] 2026-01-27 17:34:47,198 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 18:35:16] 2026-01-27 17:34:47,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 18:35:16] 2026-01-27 17:34:47,199 | INFO     | did not find any defunct processes belonging to 1505771
[2026-01-27 18:35:16] 2026-01-27 17:34:47,201 | INFO     | did not find any defunct processes belonging to 1505771
[2026-01-27 18:35:16] 2026-01-27 17:34:47,201 | INFO     | ready for new job
[2026-01-27 18:35:16] 2026-01-27 17:34:47,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 18:35:16] 2026-01-27 17:34:47,201 | INFO     | **************************************
[2026-01-27 18:35:16] 2026-01-27 17:34:47,202 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 18:35:16] 2026-01-27 17:34:47,202 | INFO     | **************************************
[2026-01-27 18:35:16] 2026-01-27 17:34:47,202 | INFO     | 
[2026-01-27 18:35:16] 2026-01-27 17:34:47,202 | INFO     | architecture information:
[2026-01-27 18:35:16] 2026-01-27 17:34:47,202 | INFO     | executing command: cat /etc/os-release
[2026-01-27 18:35:16] 2026-01-27 17:34:47,217 | INFO     | cat /etc/os-release:
[2026-01-27 18:35:16] NAME="CentOS Linux"
[2026-01-27 18:35:16] VERSION="7 (Core)"
[2026-01-27 18:35:16] ID="centos"
[2026-01-27 18:35:16] ID_LIKE="rhel fedora"
[2026-01-27 18:35:16] VERSION_ID="7"
[2026-01-27 18:35:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 18:35:16] ANSI_COLOR="0;31"
[2026-01-27 18:35:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 18:35:16] HOME_URL="https://www.centos.org/"
[2026-01-27 18:35:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 18:35:16] 
[2026-01-27 18:35:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 18:35:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 18:35:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 18:35:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 18:35:16] 
[2026-01-27 18:35:16] 2026-01-27 17:34:47,217 | INFO     | **************************************
[2026-01-27 18:35:16] 2026-01-27 17:34:47,721 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 18:35:16] 2026-01-27 17:34:47,739 | INFO     | sufficient remaining disk space (235432574976 B)
[2026-01-27 18:35:16] 2026-01-27 17:34:47,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 18:35:16] 2026-01-27 17:34:47,739 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 18:35:16] 2026-01-27 17:34:47,739 | INFO     | update_server=False
[2026-01-27 18:35:16] 2026-01-27 17:34:47,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 18:35:16] 2026-01-27 17:34:47,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 18:35:16] 2026-01-27 17:34:47,747 | INFO     | all data control threads have been joined
[2026-01-27 18:35:16] 2026-01-27 17:34:47,787 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 18:35:16] 2026-01-27 17:34:47,787 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 18:35:16] 2026-01-27 17:34:47,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 18:35:16] 2026-01-27 17:34:47,787 | INFO     | will abort loop
[2026-01-27 18:35:16] 2026-01-27 17:34:47,966 | INFO     | job.realtimelogging is not enabled
[2026-01-27 18:35:16] 2026-01-27 17:34:48,166 | INFO     | all job control threads have been joined
[2026-01-27 18:35:16] 2026-01-27 17:34:48,745 | INFO     | [job] retrieve thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:48,746 | INFO     | [job] queue monitor thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:48,753 | INFO     | [data] control thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:48,793 | INFO     | [job] job monitor thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:48,941 | INFO     | [payload] failed_post thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:48,972 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,023 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,117 | INFO     | all payload control threads have been joined
[2026-01-27 18:35:16] 2026-01-27 17:34:49,172 | INFO     | [job] control thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,425 | INFO     | [job] validate thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,477 | INFO     | [payload] validate_post thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,492 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,576 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,706 | INFO     | [data] copytool_in thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:49,746 | INFO     | [data] copytool_out thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:50,122 | INFO     | [payload] control thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:34:51,747 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 18:35:16] 2026-01-27 17:35:09,212 | INFO     | [monitor] cgroup control has ended
[2026-01-27 18:35:16] 2026-01-27 17:35:11,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140014943110976)>', '<ExcThread(monitor, started 140014172231424)>']
[2026-01-27 18:35:16] 2026-01-27 17:35:11,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 18:35:16] 2026-01-27 17:35:11,865 | INFO     | [monitor] control thread has ended
[2026-01-27 18:35:16] 2026-01-27 17:35:16,327 | INFO     | all workflow threads have been joined
[2026-01-27 18:35:16] 2026-01-27 17:35:16,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 18:35:16] 2026-01-27 17:35:16,328 | INFO     | traces error code: 0
[2026-01-27 18:35:16] 2026-01-27 17:35:16,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 18:35:16] 2026-01-27 17:35:16,408 [wrapper] ==== pilot stdout END ====
[2026-01-27 18:35:16] 2026-01-27 17:35:16,412 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 18:35:16] 2026-01-27 17:35:16,416 [wrapper] pilotpid: 1501270
[2026-01-27 18:35:16] 2026-01-27 17:35:16,420 [wrapper] Pilot exit status: 0
[2026-01-27 18:35:16] 2026-01-27 17:35:16,432 [wrapper] pandaids: 6984225399
[2026-01-27 18:35:16] 2026-01-27 17:35:16,453 [wrapper] cleanup supervisor_pilot 1510921 1501271
[2026-01-27 18:35:16] 2026-01-27 17:35:16,457 [wrapper] Test setup, not cleaning
[2026-01-27 18:35:16] 2026-01-27 17:35:16,461 [wrapper] apfmon messages muted
[2026-01-27 18:35:16] 2026-01-27 17:35:16,465 [wrapper] ==== wrapper stdout END ====
[2026-01-27 18:35:16] 2026-01-27 17:35:16,469 [wrapper] ==== wrapper stderr END ====
[2026-01-27 18:35:16]  *** Error codes and diagnostics ***
[2026-01-27 18:35:16]     "exeErrorCode": 0,
[2026-01-27 18:35:16]     "exeErrorDiag": "",
[2026-01-27 18:35:16]     "pilotErrorCode": 0,
[2026-01-27 18:35:16]     "pilotErrorDiag": "",
[2026-01-27 18:35:16]  *** Listing of results directory ***
[2026-01-27 18:35:16] total 716880
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc      5111 Jan 26 10:48 queuedata.json
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc    584422 Jan 26 10:48 pilot3.tar.gz
[2026-01-27 18:35:16] -rwx------ 1 boinc boinc     36322 Jan 26 10:48 runpilot2-wrapper.sh
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc       100 Jan 27 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 18:35:16] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 17:21 run_atlas
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc       105 Jan 27 17:21 job.xml
[2026-01-27 18:35:16] -rw-r--r-- 2 boinc boinc 531090745 Jan 27 17:21 EVNT.48310836._000017.pool.root.1
[2026-01-27 18:35:16] -rw-r--r-- 2 boinc boinc    597761 Jan 27 17:21 input.tar.gz
[2026-01-27 18:35:16] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:21 start_atlas.sh
[2026-01-27 18:35:16] drwxrwx--x 2 boinc boinc      4096 Jan 27 17:21 shared
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:21 boinc_setup_complete
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc      6376 Jan 27 17:21 init_data.xml
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:21 boinc_lockfile
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc      2499 Jan 27 17:21 pandaJob.out
[2026-01-27 18:35:16] -rw------- 1 boinc boinc   1005178 Jan 27 17:21 agis_schedconf.cvmfs.json
[2026-01-27 18:35:16] -rw------- 1 boinc boinc   1516246 Jan 27 17:22 agis_ddmendpoints.agis.ALL.json
[2026-01-27 18:35:16] -rw------- 1 boinc boinc       427 Jan 27 17:22 workernode_map.json
[2026-01-27 18:35:16] drwx------ 5 boinc boinc      4096 Jan 27 17:22 pilot3
[2026-01-27 18:35:16] -rw------- 1 boinc boinc        95 Jan 27 18:34 pilot_heartbeat.json
[2026-01-27 18:35:16] -rw------- 1 boinc boinc 197180097 Jan 27 18:34 HITS.48310840._002708.pool.root.1
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc       530 Jan 27 18:34 boinc_task_state.xml
[2026-01-27 18:35:16] -rw------- 1 boinc boinc      1016 Jan 27 18:34 memory_monitor_summary.json
[2026-01-27 18:35:16] -rw------- 1 boinc boinc    296403 Jan 27 18:34 log.48310840._002708.job.log.tgz.1
[2026-01-27 18:35:16] -rw------- 1 boinc boinc      6307 Jan 27 18:34 heartbeat.json
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc        27 Jan 27 18:34 wrapper_checkpoint.txt
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc      8192 Jan 27 18:34 boinc_mmap_file
[2026-01-27 18:35:16] -rw------- 1 boinc boinc      4810 Jan 27 18:35 pilotlog.txt
[2026-01-27 18:35:16] -rw------- 1 boinc boinc    645933 Jan 27 18:35 log.48310840._002708.job.log.1
[2026-01-27 18:35:16] -rw------- 1 boinc boinc       357 Jan 27 18:35 output.list
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc       620 Jan 27 18:35 runtime_log
[2026-01-27 18:35:16] -rw------- 1 boinc boinc    962560 Jan 27 18:35 result.tar.gz
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc      8896 Jan 27 18:35 runtime_log.err
[2026-01-27 18:35:16] -rw------- 1 boinc boinc       657 Jan 27 18:35 YDQNDmKOY48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKY9KDm78Pt5n.diag
[2026-01-27 18:35:16] -rw-r--r-- 1 boinc boinc     11965 Jan 27 18:35 stderr.txt
[2026-01-27 18:35:16] HITS file was successfully produced:
[2026-01-27 18:35:16] -rw------- 1 boinc boinc 197180097 Jan 27 18:34 shared/HITS.pool.root.1
[2026-01-27 18:35:16]  *** Contents of shared directory: ***
[2026-01-27 18:35:16] total 712752
[2026-01-27 18:35:16] -rw-r--r-- 2 boinc boinc 531090745 Jan 27 17:21 ATLAS.root_0
[2026-01-27 18:35:16] -rw-r--r-- 2 boinc boinc    597761 Jan 27 17:21 input.tar.gz
[2026-01-27 18:35:16] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:21 start_atlas.sh
[2026-01-27 18:35:16] -rw------- 1 boinc boinc 197180097 Jan 27 18:34 HITS.pool.root.1
[2026-01-27 18:35:16] -rw------- 1 boinc boinc    962560 Jan 27 18:35 result.tar.gz
18:35:17 (1497480): run_atlas exited; CPU time 16436.179420
18:35:17 (1497480): called boinc_finish(0)

</stderr_txt>
]]>

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