Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:46 (1048943): wrapper (7.7.26015): starting
22:54:46 (1048943): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 22:54:46] Arguments: --nthreads 4
[2026-01-27 22:54:46] Threads: 4
[2026-01-27 22:54:46] Checking for CVMFS
[2026-01-27 22:54:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 22:54:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 22:54:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 22:54:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 22:54:47] 2.9.2.0 4135 4499 97352 155599 3 50 29510401 36864000 0 130560 0 2194898 99.986 170790 4813 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 22:54:47] CVMFS is ok
[2026-01-27 22:54:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 22:54:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 22:54:47] Further information can be found at the LHC@home message board.
[2026-01-27 22:54:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 22:54:47] Checking for apptainer binary...
[2026-01-27 22:54:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 22:54:47] Running /usr/bin/apptainer --version
[2026-01-27 22:54:47] apptainer version 1.4.1-1.1
[2026-01-27 22:54:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 22:54:47] atlasA237
[2026-01-27 22:54:47] apptainer works
[2026-01-27 22:54:47] Set ATHENA_PROC_NUMBER=4
[2026-01-27 22:54:47] Set ATHENA_CORE_NUMBER=4
[2026-01-27 22:54:47] Starting ATLAS job with PandaID=6984229050
[2026-01-27 22:54:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 00:16:28]  *** The last 200 lines of the pilot log: ***
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | job 6984229050 has completed (purged errors)
[2026-01-28 00:16:28] 2026-01-27 23:15:56,312 | INFO     | overall cleanup function is called
[2026-01-28 00:16:28] 2026-01-27 23:15:57,317 | INFO     | --- collectZombieJob: --- 10, [1057648]
[2026-01-28 00:16:28] 2026-01-27 23:15:57,317 | INFO     | zombie collector waiting for pid 1057648
[2026-01-28 00:16:28] 2026-01-27 23:15:57,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 00:16:28] 2026-01-27 23:15:57,317 | INFO     | collected zombie processes
[2026-01-28 00:16:28] 2026-01-27 23:15:57,317 | INFO     | will attempt to kill all subprocesses of pid=1057648
[2026-01-28 00:16:28] 2026-01-27 23:15:57,383 | INFO     | process IDs to be killed: [1057648] (in reverse order)
[2026-01-28 00:16:28] 2026-01-27 23:15:57,425 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 00:16:28] 2026-01-27 23:15:57,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 00:16:28] 2026-01-27 23:15:57,428 | INFO     | did not find any defunct processes belonging to 1057648
[2026-01-28 00:16:28] 2026-01-27 23:15:57,430 | INFO     | did not find any defunct processes belonging to 1057648
[2026-01-28 00:16:28] 2026-01-27 23:15:57,430 | INFO     | ready for new job
[2026-01-28 00:16:28] 2026-01-27 23:15:57,430 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 00:16:28] 2026-01-27 23:15:57,431 | INFO     | **************************************
[2026-01-28 00:16:28] 2026-01-27 23:15:57,431 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 00:16:28] 2026-01-27 23:15:57,431 | INFO     | **************************************
[2026-01-28 00:16:28] 2026-01-27 23:15:57,431 | INFO     | 
[2026-01-28 00:16:28] 2026-01-27 23:15:57,431 | INFO     | architecture information:
[2026-01-28 00:16:28] 2026-01-27 23:15:57,431 | INFO     | executing command: cat /etc/os-release
[2026-01-28 00:16:28] 2026-01-27 23:15:57,445 | INFO     | cat /etc/os-release:
[2026-01-28 00:16:28] NAME="CentOS Linux"
[2026-01-28 00:16:28] VERSION="7 (Core)"
[2026-01-28 00:16:28] ID="centos"
[2026-01-28 00:16:28] ID_LIKE="rhel fedora"
[2026-01-28 00:16:28] VERSION_ID="7"
[2026-01-28 00:16:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 00:16:28] ANSI_COLOR="0;31"
[2026-01-28 00:16:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 00:16:28] HOME_URL="https://www.centos.org/"
[2026-01-28 00:16:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 00:16:28] 
[2026-01-28 00:16:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 00:16:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 00:16:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 00:16:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 00:16:28] 
[2026-01-28 00:16:28] 2026-01-27 23:15:57,446 | INFO     | **************************************
[2026-01-28 00:16:28] 2026-01-27 23:15:57,948 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 00:16:28] 2026-01-27 23:15:57,965 | INFO     | sufficient remaining disk space (330900176896 B)
[2026-01-28 00:16:28] 2026-01-27 23:15:57,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 00:16:28] 2026-01-27 23:15:57,965 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 00:16:28] 2026-01-27 23:15:57,965 | INFO     | update_server=False
[2026-01-28 00:16:28] 2026-01-27 23:15:57,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 00:16:28] 2026-01-27 23:15:57,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 00:16:28] 2026-01-27 23:15:57,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 00:16:28] 2026-01-27 23:15:58,656 | INFO     | all payload control threads have been joined
[2026-01-28 00:16:28] 2026-01-27 23:15:58,904 | INFO     | all data control threads have been joined
[2026-01-28 00:16:28] 2026-01-27 23:15:58,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 00:16:28] 2026-01-27 23:15:58,960 | INFO     | aborting loop
[2026-01-28 00:16:28] 2026-01-27 23:15:58,967 | INFO     | [job] retrieve thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:58,971 | INFO     | [job] queue monitor thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,105 | INFO     | all job control threads have been joined
[2026-01-28 00:16:28] 2026-01-27 23:15:59,119 | INFO     | [payload] failed_post thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,140 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,175 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 00:16:28] 2026-01-27 23:15:59,661 | INFO     | [payload] control thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,680 | INFO     | [payload] validate_post thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,910 | INFO     | [data] control thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:15:59,964 | INFO     | [job] job monitor thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:00,080 | INFO     | [job] validate thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:00,106 | INFO     | [job] control thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:00,170 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:00,221 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:00,404 | INFO     | [data] copytool_in thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:01,330 | INFO     | [data] copytool_out thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:01,972 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 00:16:28] 2026-01-27 23:16:05,951 | INFO     | [monitor] cgroup control has ended
[2026-01-28 00:16:28] 2026-01-27 23:16:06,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109053613888)>', '<ExcThread(monitor, started 140108250466048)>']
[2026-01-28 00:16:28] 2026-01-27 23:16:11,053 | INFO     | all workflow threads have been joined
[2026-01-28 00:16:28] 2026-01-27 23:16:11,054 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 00:16:28] 2026-01-27 23:16:11,054 | INFO     | traces error code: 0
[2026-01-28 00:16:28] 2026-01-27 23:16:11,054 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 00:16:28] 2026-01-27 23:16:28,067 | INFO     | PID=1053109 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-28 00:16:28] 2026-01-27 23:16:28,067 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 00:16:28] 2026-01-27 23:16:28,067 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 00:16:28] 2026-01-27 23:16:28,067 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 00:16:28] 2026-01-27 23:16:28,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 00:16:28] 2026-01-27 23:16:28,067 | INFO     | [monitor] control thread has ended
[2026-01-28 00:16:28] 2026-01-27 23:16:28,137 [wrapper] ==== pilot stdout END ====
[2026-01-28 00:16:28] 2026-01-27 23:16:28,140 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 00:16:28] 2026-01-27 23:16:28,144 [wrapper] pilotpid: 1053109
[2026-01-28 00:16:28] 2026-01-27 23:16:28,147 [wrapper] Pilot exit status: 0
[2026-01-28 00:16:28] 2026-01-27 23:16:28,158 [wrapper] pandaids: 6984229050
[2026-01-28 00:16:28] 2026-01-27 23:16:28,184 [wrapper] cleanup supervisor_pilot 1068575 1053110
[2026-01-28 00:16:28] 2026-01-27 23:16:28,188 [wrapper] Test setup, not cleaning
[2026-01-28 00:16:28] 2026-01-27 23:16:28,191 [wrapper] apfmon messages muted
[2026-01-28 00:16:28] 2026-01-27 23:16:28,195 [wrapper] ==== wrapper stdout END ====
[2026-01-28 00:16:28] 2026-01-27 23:16:28,199 [wrapper] ==== wrapper stderr END ====
[2026-01-28 00:16:28]  *** Error codes and diagnostics ***
[2026-01-28 00:16:28]     "exeErrorCode": 0,
[2026-01-28 00:16:28]     "exeErrorDiag": "",
[2026-01-28 00:16:28]     "pilotErrorCode": 0,
[2026-01-28 00:16:28]     "pilotErrorDiag": "",
[2026-01-28 00:16:28]  *** Listing of results directory ***
[2026-01-28 00:16:28] total 723044
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc    584422 Jan 26 12:54 pilot3.tar.gz
[2026-01-28 00:16:28] -rwx------ 1 boinc boinc     36322 Jan 26 12:54 runpilot2-wrapper.sh
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc      5111 Jan 26 12:56 queuedata.json
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc       100 Jan 27 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 00:16:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 22:54 run_atlas
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc       105 Jan 27 22:54 job.xml
[2026-01-28 00:16:28] -rw-r--r-- 2 boinc boinc 531345664 Jan 27 22:54 EVNT.48318024._000022.pool.root.1
[2026-01-28 00:16:28] -rw-r--r-- 2 boinc boinc    597768 Jan 27 22:54 input.tar.gz
[2026-01-28 00:16:28] drwxrwx--x 2 boinc boinc      4096 Jan 27 22:54 shared
[2026-01-28 00:16:28] -rw-r--r-- 2 boinc boinc     15845 Jan 27 22:54 start_atlas.sh
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc         0 Jan 27 22:54 boinc_setup_complete
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc      6371 Jan 27 22:54 init_data.xml
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc         0 Jan 27 22:54 boinc_lockfile
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc      2523 Jan 27 22:54 pandaJob.out
[2026-01-28 00:16:28] -rw------- 1 boinc boinc   1005253 Jan 27 22:54 agis_schedconf.cvmfs.json
[2026-01-28 00:16:28] -rw------- 1 boinc boinc   1516246 Jan 27 22:54 agis_ddmendpoints.agis.ALL.json
[2026-01-28 00:16:28] -rw------- 1 boinc boinc       424 Jan 27 22:54 workernode_map.json
[2026-01-28 00:16:28] drwx------ 5 boinc boinc      4096 Jan 27 22:54 pilot3
[2026-01-28 00:16:28] -rw------- 1 boinc boinc 203168699 Jan 28 00:15 HITS.48318026._001172.pool.root.1
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc       530 Jan 28 00:15 boinc_task_state.xml
[2026-01-28 00:16:28] -rw------- 1 boinc boinc      1021 Jan 28 00:15 memory_monitor_summary.json
[2026-01-28 00:16:28] -rw------- 1 boinc boinc    262372 Jan 28 00:15 log.48318026._001172.job.log.tgz.1
[2026-01-28 00:16:28] -rw------- 1 boinc boinc      6308 Jan 28 00:15 heartbeat.json
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc      8192 Jan 28 00:16 boinc_mmap_file
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc        27 Jan 28 00:16 wrapper_checkpoint.txt
[2026-01-28 00:16:28] -rw------- 1 boinc boinc       747 Jan 28 00:16 pilotlog.txt
[2026-01-28 00:16:28] -rw------- 1 boinc boinc        95 Jan 28 00:16 pilot_heartbeat.json
[2026-01-28 00:16:28] -rw------- 1 boinc boinc    711216 Jan 28 00:16 log.48318026._001172.job.log.1
[2026-01-28 00:16:28] -rw------- 1 boinc boinc       357 Jan 28 00:16 output.list
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc       620 Jan 28 00:16 runtime_log
[2026-01-28 00:16:28] -rw------- 1 boinc boinc    993280 Jan 28 00:16 result.tar.gz
[2026-01-28 00:16:28] -rw------- 1 boinc boinc       660 Jan 28 00:16 wtJKDmRMa48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrD3KDmA7Bs4m.diag
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc      8911 Jan 28 00:16 runtime_log.err
[2026-01-28 00:16:28] -rw-r--r-- 1 boinc boinc     12544 Jan 28 00:16 stderr.txt
[2026-01-28 00:16:28] HITS file was successfully produced:
[2026-01-28 00:16:28] -rw------- 1 boinc boinc 203168699 Jan 28 00:15 shared/HITS.pool.root.1
[2026-01-28 00:16:28]  *** Contents of shared directory: ***
[2026-01-28 00:16:28] total 718884
[2026-01-28 00:16:28] -rw-r--r-- 2 boinc boinc 531345664 Jan 27 22:54 ATLAS.root_0
[2026-01-28 00:16:28] -rw-r--r-- 2 boinc boinc    597768 Jan 27 22:54 input.tar.gz
[2026-01-28 00:16:28] -rw-r--r-- 2 boinc boinc     15845 Jan 27 22:54 start_atlas.sh
[2026-01-28 00:16:28] -rw------- 1 boinc boinc 203168699 Jan 28 00:15 HITS.pool.root.1
[2026-01-28 00:16:28] -rw------- 1 boinc boinc    993280 Jan 28 00:16 result.tar.gz
00:16:29 (1048943): run_atlas exited; CPU time 18462.762313
00:16:29 (1048943): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN