Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:58 (5440): wrapper (7.7.26015): starting
17:39:58 (5440): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 17:39:58] Arguments: --nthreads 8
[2026-01-27 17:39:58] Threads: 8
[2026-01-27 17:39:58] Checking for CVMFS
[2026-01-27 17:39:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 17:40:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 17:40:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 17:40:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 17:40:01] 2.11.2.0 27806 61569 135960 155592 3 3 12778439 25165824 899 130560 0 24699297 99.829 16010355 3487 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 17:40:01] CVMFS is ok
[2026-01-27 17:40:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 17:40:01] Checking for apptainer binary...
[2026-01-27 17:40:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 17:40:01] Running /usr/bin/apptainer --version
[2026-01-27 17:40:02] apptainer version 1.3.2-1.el7
[2026-01-27 17:40:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 17:40:17] cg-vwn467.simple-grid.lan
[2026-01-27 17:40:17] apptainer works
[2026-01-27 17:40:17] Set ATHENA_PROC_NUMBER=8
[2026-01-27 17:40:17] Set ATHENA_CORE_NUMBER=8
[2026-01-27 17:40:17] Starting ATLAS job with PandaID=6984227816
[2026-01-27 17:40:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 22:07:20]  *** The last 200 lines of the pilot log: ***
[2026-01-27 22:07:20] 2026-01-27 21:06:16,714 | INFO     | job 6984227816 has finished - writing final server update
[2026-01-27 22:07:20] 2026-01-27 21:06:16,714 | INFO     | total number of processed events: 400 (read)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,716 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6984227816/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,717 | INFO     | extracted standard info from prmon json
[2026-01-27 22:07:20] 2026-01-27 21:06:16,717 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 22:07:20] 2026-01-27 21:06:16,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 22:07:20] 2026-01-27 21:06:16,718 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 22:07:20] 2026-01-27 21:06:16,718 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 22:07:20] 2026-01-27 21:06:16,723 | INFO     | fitting pss+swap vs Time
[2026-01-27 22:07:20] 2026-01-27 21:06:16,723 | INFO     | sum of square deviations: 4903347750.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,726 | INFO     | sum of deviations: 148712825980.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,726 | INFO     | mean x: 1769540312.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,726 | INFO     | mean y: 2413444.410358566
[2026-01-27 22:07:20] 2026-01-27 21:06:16,726 | INFO     | intersect: -53665683109.225044
[2026-01-27 22:07:20] 2026-01-27 21:06:16,727 | INFO     | chi2: 8.506014683752266
[2026-01-27 22:07:20] 2026-01-27 21:06:16,727 | INFO     | sum of square deviations: 4616114457.5
[2026-01-27 22:07:20] 2026-01-27 21:06:16,729 | INFO     | sum of deviations: 162462646880.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,729 | INFO     | mean x: 1769540159.5
[2026-01-27 22:07:20] 2026-01-27 21:06:16,729 | INFO     | mean y: 2420595.5853658537
[2026-01-27 22:07:20] 2026-01-27 21:06:16,730 | INFO     | intersect: -62275969751.89387
[2026-01-27 22:07:20] 2026-01-27 21:06:16,730 | INFO     | chi2: 7.7372096424712336
[2026-01-27 22:07:20] 2026-01-27 21:06:16,730 | INFO     | current chi2=7.7372096424712336 (change=9.038369552189494 %)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,730 | INFO     | right removable region: 245
[2026-01-27 22:07:20] 2026-01-27 21:06:16,731 | INFO     | sum of square deviations: 4616114457.5
[2026-01-27 22:07:20] 2026-01-27 21:06:16,736 | INFO     | sum of deviations: 61608177350.49997
[2026-01-27 22:07:20] 2026-01-27 21:06:16,736 | INFO     | mean x: 1769540464.5
[2026-01-27 22:07:20] 2026-01-27 21:06:16,736 | INFO     | mean y: 2459664.2967479676
[2026-01-27 22:07:20] 2026-01-27 21:06:16,736 | INFO     | intersect: -23614407675.00321
[2026-01-27 22:07:20] 2026-01-27 21:06:16,737 | INFO     | chi2: 3.481427636940858
[2026-01-27 22:07:20] 2026-01-27 21:06:16,737 | INFO     | current chi2=3.481427636940858 (change=59.07098957175686 %)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,737 | INFO     | sum of square deviations: 4340323240.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,739 | INFO     | sum of deviations: -2307284800.999998
[2026-01-27 22:07:20] 2026-01-27 21:06:16,740 | INFO     | mean x: 1769540617.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,740 | INFO     | mean y: 2494941.5767634856
[2026-01-27 22:07:20] 2026-01-27 21:06:16,740 | INFO     | intersect: 943170081.3288568
[2026-01-27 22:07:20] 2026-01-27 21:06:16,740 | INFO     | chi2: 0.9439204796715783
[2026-01-27 22:07:20] 2026-01-27 21:06:16,740 | INFO     | current chi2=0.9439204796715783 (change=72.886971147819 %)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,741 | INFO     | sum of square deviations: 4075741535.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,743 | INFO     | sum of deviations: -7862144088.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,743 | INFO     | mean x: 1769540769.5
[2026-01-27 22:07:20] 2026-01-27 21:06:16,743 | INFO     | mean y: 2498085.279661017
[2026-01-27 22:07:20] 2026-01-27 21:06:16,743 | INFO     | intersect: 3415959017.462986
[2026-01-27 22:07:20] 2026-01-27 21:06:16,744 | INFO     | chi2: 0.8810761856224123
[2026-01-27 22:07:20] 2026-01-27 21:06:16,744 | INFO     | current chi2=0.8810761856224123 (change=6.657795376050286 %)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,744 | INFO     | left removable region: 30
[2026-01-27 22:07:20] 2026-01-27 21:06:16,745 | INFO     | sum of square deviations: 3081657780.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,746 | INFO     | sum of deviations: 7682911814.000001
[2026-01-27 22:07:20] 2026-01-27 21:06:16,746 | INFO     | mean x: 1769541044.0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,746 | INFO     | mean y: 2507807.269767442
[2026-01-27 22:07:20] 2026-01-27 21:06:16,747 | INFO     | intersect: -4409152656.957865
[2026-01-27 22:07:20] 2026-01-27 21:06:16,747 | INFO     | chi2: 0.00033165325395466096
[2026-01-27 22:07:20] 2026-01-27 21:06:16,747 | INFO     | current memory leak: 2.49 B/s (using 215 data points, chi2=0.00)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | could have reported an average CPU frequency of 2250 MHz (12 samples)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | ..............................
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | . Timing measurements:
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | . get job = 0 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | . initial setup = 114 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | . payload setup = 148 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,748 | INFO     | . stage-in = 0 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,749 | INFO     | . payload execution = 15397 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,749 | INFO     | . stage-out = 5 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,749 | INFO     | . log creation = 1 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,749 | INFO     | ..............................
[2026-01-27 22:07:20] 2026-01-27 21:06:16,891 | INFO     | 
[2026-01-27 22:07:20] 2026-01-27 21:06:16,891 | INFO     | job summary report
[2026-01-27 22:07:20] 2026-01-27 21:06:16,891 | INFO     | --------------------------------------------------
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | PanDA job id: 6984227816
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | task id: 48318026
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | errors: (none)
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | pilot state: finished 
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | transexitcode: 0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | exeerrorcode: 0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | exeerrordiag: 
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | exitcode: 0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | exitmsg: OK
[2026-01-27 22:07:20] 2026-01-27 21:06:16,892 | INFO     | cpuconsumptiontime: 58113 s
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | nevents: 400
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | neventsw: 0
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | pid: 13905
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | pgrp: 13905
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | corecount: 8
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | event service: False
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | sizes: {0: 2283144, 1: 2283829, 2: 2284290, 13: 2284290, 15549: 2315491, 15550: 2315490, 15557: 2324672, 15560: 2324728, 15562: 2324922}
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | --------------------------------------------------
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | 
[2026-01-27 22:07:20] 2026-01-27 21:06:16,893 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-27 22:07:20] 2026-01-27 21:06:17,211 | INFO     | time since job start (15575s) is within the limit (349056.0s)
[2026-01-27 22:07:20] 2026-01-27 21:06:17,620 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,623 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 22:07:20] 2026-01-27 21:06:17,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,623 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 22:07:20] 2026-01-27 21:06:17,623 | INFO     | job 6984227816 has completed (purged errors)
[2026-01-27 22:07:20] 2026-01-27 21:06:17,623 | INFO     | overall cleanup function is called
[2026-01-27 22:07:20] 2026-01-27 21:06:18,632 | INFO     | --- collectZombieJob: --- 10, [13905]
[2026-01-27 22:07:20] 2026-01-27 21:06:18,632 | INFO     | zombie collector waiting for pid 13905
[2026-01-27 22:07:20] 2026-01-27 21:06:18,632 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 22:07:20] 2026-01-27 21:06:18,633 | INFO     | collected zombie processes
[2026-01-27 22:07:20] 2026-01-27 21:06:18,633 | INFO     | will attempt to kill all subprocesses of pid=13905
[2026-01-27 22:07:20] 2026-01-27 21:06:18,722 | INFO     | process IDs to be killed: [13905] (in reverse order)
[2026-01-27 22:07:20] 2026-01-27 21:06:19,735 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 22:07:20] 2026-01-27 21:06:19,736 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 22:07:20] 2026-01-27 21:06:19,738 | INFO     | did not find any defunct processes belonging to 13905
[2026-01-27 22:07:20] 2026-01-27 21:06:19,740 | INFO     | did not find any defunct processes belonging to 13905
[2026-01-27 22:07:20] 2026-01-27 21:06:19,740 | INFO     | ready for new job
[2026-01-27 22:07:20] 2026-01-27 21:06:19,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 22:07:20] 2026-01-27 21:06:19,742 | INFO     | **************************************
[2026-01-27 22:07:20] 2026-01-27 21:06:19,742 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 22:07:20] 2026-01-27 21:06:19,742 | INFO     | **************************************
[2026-01-27 22:07:20] 2026-01-27 21:06:19,742 | INFO     | 
[2026-01-27 22:07:20] 2026-01-27 21:06:19,743 | INFO     | pilot is running in a VM
[2026-01-27 22:07:20] 2026-01-27 21:06:19,743 | INFO     | architecture information:
[2026-01-27 22:07:20] 2026-01-27 21:06:19,749 | INFO     | executing command: cat /etc/os-release
[2026-01-27 22:07:20] 2026-01-27 21:06:19,801 | INFO     | cat /etc/os-release:
[2026-01-27 22:07:20] NAME="CentOS Linux"
[2026-01-27 22:07:20] VERSION="7 (Core)"
[2026-01-27 22:07:20] ID="centos"
[2026-01-27 22:07:20] ID_LIKE="rhel fedora"
[2026-01-27 22:07:20] VERSION_ID="7"
[2026-01-27 22:07:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 22:07:20] ANSI_COLOR="0;31"
[2026-01-27 22:07:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 22:07:20] HOME_URL="https://www.centos.org/"
[2026-01-27 22:07:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 22:07:20] 
[2026-01-27 22:07:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 22:07:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 22:07:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 22:07:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 22:07:20] 
[2026-01-27 22:07:20] 2026-01-27 21:06:19,802 | INFO     | **************************************
[2026-01-27 22:07:20] 2026-01-27 21:06:20,305 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-27 22:07:20] 2026-01-27 21:06:20,595 | INFO     | sufficient remaining disk space (496255369216 B)
[2026-01-27 22:07:20] 2026-01-27 21:06:20,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 22:07:20] 2026-01-27 21:06:20,595 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 22:07:20] 2026-01-27 21:06:20,595 | INFO     | update_server=False
[2026-01-27 22:07:20] 2026-01-27 21:06:20,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 22:07:20] 2026-01-27 21:06:20,618 | INFO     | all payload control threads have been joined
[2026-01-27 22:07:20] 2026-01-27 21:06:20,618 | INFO     | all data control threads have been joined
[2026-01-27 22:07:20] 2026-01-27 21:06:20,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 22:07:20] 2026-01-27 21:06:21,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 22:07:20] 2026-01-27 21:06:21,159 | INFO     | aborting loop
[2026-01-27 22:07:20] 2026-01-27 21:06:21,186 | INFO     | all job control threads have been joined
[2026-01-27 22:07:20] 2026-01-27 21:06:21,601 | INFO     | [job] retrieve thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:21,624 | INFO     | [data] control thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:21,625 | INFO     | [payload] control thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:21,662 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:21,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 22:07:20] 2026-01-27 21:06:21,820 | INFO     | [data] copytool_in thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:21,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 22:07:20] 2026-01-27 21:06:22,109 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,112 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,165 | INFO     | [job] job monitor thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,192 | INFO     | [job] control thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,708 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,711 | INFO     | [payload] failed_post thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,864 | INFO     | [job] validate thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,910 | INFO     | [job] queue monitor thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:22,970 | INFO     | [payload] validate_post thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:23,805 | INFO     | [data] copytool_out thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:24,755 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 22:07:20] 2026-01-27 21:06:50,392 | INFO     | PID=9434 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 22:07:20] 2026-01-27 21:06:50,392 | INFO     | .. there are 2 such processes running
[2026-01-27 22:07:20] 2026-01-27 21:06:50,392 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 22:07:20] 2026-01-27 21:06:50,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 22:07:20] 2026-01-27 21:06:50,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 22:07:20] 2026-01-27 21:07:08,279 | INFO     | [monitor] cgroup control has ended
[2026-01-27 22:07:20] 2026-01-27 21:07:09,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698883917632)>', '<ExcThread(monitor, started 139698148198144)>']
[2026-01-27 22:07:20] 2026-01-27 21:07:10,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 22:07:20] 2026-01-27 21:07:10,512 | INFO     | [monitor] control thread has ended
[2026-01-27 22:07:20] 2026-01-27 21:07:14,752 | INFO     | all workflow threads have been joined
[2026-01-27 22:07:20] 2026-01-27 21:07:14,752 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 22:07:20] 2026-01-27 21:07:14,753 | INFO     | traces error code: 0
[2026-01-27 22:07:20] 2026-01-27 21:07:14,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 22:07:20] 2026-01-27 21:07:15,186 [wrapper] ==== pilot stdout END ====
[2026-01-27 22:07:20] 2026-01-27 21:07:15,281 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 22:07:20] 2026-01-27 21:07:15,364 [wrapper] pilotpid: 9434
[2026-01-27 22:07:20] 2026-01-27 21:07:15,454 [wrapper] Pilot exit status: 0
[2026-01-27 22:07:20] 2026-01-27 21:07:16,055 [wrapper] pandaids: 6984227816
[2026-01-27 22:07:20] 2026-01-27 21:07:17,163 [wrapper] cleanup supervisor_pilot 20188 9435
[2026-01-27 22:07:20] 2026-01-27 21:07:17,246 [wrapper] Test setup, not cleaning
[2026-01-27 22:07:20] 2026-01-27 21:07:17,358 [wrapper] apfmon messages muted
[2026-01-27 22:07:20] 2026-01-27 21:07:17,480 [wrapper] ==== wrapper stdout END ====
[2026-01-27 22:07:20] 2026-01-27 21:07:17,619 [wrapper] ==== wrapper stderr END ====
[2026-01-27 22:07:20]  *** Error codes and diagnostics ***
[2026-01-27 22:07:20]     "exeErrorCode": 0,
[2026-01-27 22:07:20]     "exeErrorDiag": "",
[2026-01-27 22:07:20]     "pilotErrorCode": 0,
[2026-01-27 22:07:20]     "pilotErrorDiag": "",
[2026-01-27 22:07:20]  *** Listing of results directory ***
[2026-01-27 22:07:20] total 733756
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc    584422 Jan 26 12:54 pilot3.tar.gz
[2026-01-27 22:07:20] -rwx------. 1 boinc boinc     36322 Jan 26 12:54 runpilot2-wrapper.sh
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc      5111 Jan 26 12:56 queuedata.json
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc       100 Jan 27 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 22:07:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 17:39 run_atlas
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc       105 Jan 27 17:39 job.xml
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc      6390 Jan 27 17:39 init_data.xml
[2026-01-27 22:07:20] -rw-r--r--. 2 boinc boinc 541369871 Jan 27 17:39 EVNT.48318024._000025.pool.root.1
[2026-01-27 22:07:20] -rw-r--r--. 2 boinc boinc     15845 Jan 27 17:39 start_atlas.sh
[2026-01-27 22:07:20] drwxrwx--x. 2 boinc boinc        68 Jan 27 17:39 shared
[2026-01-27 22:07:20] -rw-r--r--. 2 boinc boinc    597765 Jan 27 17:39 input.tar.gz
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc         0 Jan 27 17:39 boinc_lockfile
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc      2524 Jan 27 17:40 pandaJob.out
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc       413 Jan 27 17:46 workernode_map.json
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc   1005178 Jan 27 17:46 agis_schedconf.cvmfs.json
[2026-01-27 22:07:20] drwx------. 5 boinc boinc      4096 Jan 27 17:46 pilot3
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc 200671840 Jan 27 22:04 HITS.48318026._001047.pool.root.1
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc       531 Jan 27 22:05 boinc_task_state.xml
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc        95 Jan 27 22:05 pilot_heartbeat.json
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc      1012 Jan 27 22:06 memory_monitor_summary.json
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc   1516246 Jan 27 22:06 agis_ddmendpoints.agis.ALL.json
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc    505164 Jan 27 22:06 log.48318026._001047.job.log.tgz.1
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc      6315 Jan 27 22:06 heartbeat.json
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc        28 Jan 27 22:07 wrapper_checkpoint.txt
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc      8192 Jan 27 22:07 boinc_mmap_file
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc      4879 Jan 27 22:07 pilotlog.txt
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc   2194560 Jan 27 22:07 log.48318026._001047.job.log.1
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc       357 Jan 27 22:07 output.list
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc       620 Jan 27 22:07 runtime_log
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc   2713600 Jan 27 22:07 result.tar.gz
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc      8816 Jan 27 22:07 runtime_log.err
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc       656 Jan 27 22:07 nssKDmJMa48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmp9KDmUtALSm.diag
[2026-01-27 22:07:20] -rw-r--r--. 1 boinc boinc     20675 Jan 27 22:07 stderr.txt
[2026-01-27 22:07:20] HITS file was successfully produced:
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc 200671840 Jan 27 22:04 shared/HITS.pool.root.1
[2026-01-27 22:07:20]  *** Contents of shared directory: ***
[2026-01-27 22:07:20] total 727908
[2026-01-27 22:07:20] -rw-r--r--. 2 boinc boinc 541369871 Jan 27 17:39 ATLAS.root_0
[2026-01-27 22:07:20] -rw-r--r--. 2 boinc boinc     15845 Jan 27 17:39 start_atlas.sh
[2026-01-27 22:07:20] -rw-r--r--. 2 boinc boinc    597765 Jan 27 17:39 input.tar.gz
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc 200671840 Jan 27 22:04 HITS.pool.root.1
[2026-01-27 22:07:20] -rw-------. 1 boinc boinc   2713600 Jan 27 22:07 result.tar.gz
22:07:22 (5440): run_atlas exited; CPU time 58261.769541
22:07:22 (5440): called boinc_finish(0)

</stderr_txt>
]]>

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