Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:04:41 (24055): wrapper (7.7.26015): starting
18:04:41 (24055): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 18:04:41] Arguments: --nthreads 8
[2026-01-27 18:04:41] Threads: 8
[2026-01-27 18:04:41] Checking for CVMFS
[2026-01-27 18:04:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 18:04:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 18:04:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 18:04:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 18:04:44] 2.11.2.0 5634 61589 134084 155592 3 53 12828740 25165824 899 130560 0 19896506 99.819 15312235 3091 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 18:04:44] CVMFS is ok
[2026-01-27 18:04:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 18:04:44] Checking for apptainer binary...
[2026-01-27 18:04:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 18:04:44] Running /usr/bin/apptainer --version
[2026-01-27 18:04:44] apptainer version 1.3.2-1.el7
[2026-01-27 18:04:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 18:04:49] cg-vwn416.simple-grid.lan
[2026-01-27 18:04:49] apptainer works
[2026-01-27 18:04:49] Set ATHENA_PROC_NUMBER=8
[2026-01-27 18:04:49] Set ATHENA_CORE_NUMBER=8
[2026-01-27 18:04:49] Starting ATLAS job with PandaID=6984227681
[2026-01-27 18:04:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 22:47:44]  *** The last 200 lines of the pilot log: ***
[2026-01-27 22:47:44] 2026-01-27 21:46:29,392 | INFO     | total number of processed events: 400 (read)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,394 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6984227681/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,395 | INFO     | extracted standard info from prmon json
[2026-01-27 22:47:44] 2026-01-27 21:46:29,395 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 22:47:44] 2026-01-27 21:46:29,395 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 22:47:44] 2026-01-27 21:46:29,395 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 22:47:44] 2026-01-27 21:46:29,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 22:47:44] 2026-01-27 21:46:29,407 | INFO     | fitting pss+swap vs Time
[2026-01-27 22:47:44] 2026-01-27 21:46:29,408 | INFO     | sum of square deviations: 5836025702.5
[2026-01-27 22:47:44] 2026-01-27 21:46:29,411 | INFO     | sum of deviations: 95087808055.49992
[2026-01-27 22:47:44] 2026-01-27 21:46:29,411 | INFO     | mean x: 1769542247.5
[2026-01-27 22:47:44] 2026-01-27 21:46:29,411 | INFO     | mean y: 2469276.0488721803
[2026-01-27 22:47:44] 2026-01-27 21:46:29,411 | INFO     | intersect: -28829119574.61348
[2026-01-27 22:47:44] 2026-01-27 21:46:29,412 | INFO     | chi2: 8.701134263984894
[2026-01-27 22:47:44] 2026-01-27 21:46:29,412 | INFO     | sum of square deviations: 5513070810.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,415 | INFO     | sum of deviations: 111271535025.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,415 | INFO     | mean x: 1769542095.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,415 | INFO     | mean y: 2476790.459770115
[2026-01-27 22:47:44] 2026-01-27 21:46:29,415 | INFO     | intersect: -35712585102.9688
[2026-01-27 22:47:44] 2026-01-27 21:46:29,416 | INFO     | chi2: 8.00502395104679
[2026-01-27 22:47:44] 2026-01-27 21:46:29,416 | INFO     | current chi2=8.00502395104679 (change=8.000224934114557 %)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,416 | INFO     | right removable region: 260
[2026-01-27 22:47:44] 2026-01-27 21:46:29,417 | INFO     | sum of square deviations: 5513070810.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,419 | INFO     | sum of deviations: 1106543415.9999847
[2026-01-27 22:47:44] 2026-01-27 21:46:29,419 | INFO     | mean x: 1769542400.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,420 | INFO     | mean y: 2513629.0153256706
[2026-01-27 22:47:44] 2026-01-27 21:46:29,420 | INFO     | intersect: -352656032.23791176
[2026-01-27 22:47:44] 2026-01-27 21:46:29,420 | INFO     | chi2: 3.6505622172618652
[2026-01-27 22:47:44] 2026-01-27 21:46:29,420 | INFO     | current chi2=3.6505622172618652 (change=58.044984636405296 %)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,421 | INFO     | sum of square deviations: 5202255680.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,429 | INFO     | sum of deviations: -66916918168.5
[2026-01-27 22:47:44] 2026-01-27 21:46:29,430 | INFO     | mean x: 1769542552.5
[2026-01-27 22:47:44] 2026-01-27 21:46:29,430 | INFO     | mean y: 2546957.20703125
[2026-01-27 22:47:44] 2026-01-27 21:46:29,430 | INFO     | intersect: 22764275996.507366
[2026-01-27 22:47:44] 2026-01-27 21:46:29,430 | INFO     | chi2: 1.125902380215679
[2026-01-27 22:47:44] 2026-01-27 21:46:29,431 | INFO     | current chi2=1.125902380215679 (change=69.15811008803539 %)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,431 | INFO     | sum of square deviations: 4903347750.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,433 | INFO     | sum of deviations: -78078502755.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,434 | INFO     | mean x: 1769542705.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,434 | INFO     | mean y: 2552616.298804781
[2026-01-27 22:47:44] 2026-01-27 21:46:29,434 | INFO     | intersect: 28179882067.882706
[2026-01-27 22:47:44] 2026-01-27 21:46:29,434 | INFO     | chi2: 0.9989038712160238
[2026-01-27 22:47:44] 2026-01-27 21:46:29,435 | INFO     | current chi2=0.9989038712160238 (change=11.279708723533135 %)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,435 | INFO     | left removable region: 30
[2026-01-27 22:47:44] 2026-01-27 21:46:29,435 | INFO     | sum of square deviations: 3772712597.5
[2026-01-27 22:47:44] 2026-01-27 21:46:29,437 | INFO     | sum of deviations: -41508346761.0
[2026-01-27 22:47:44] 2026-01-27 21:46:29,437 | INFO     | mean x: 1769542979.5
[2026-01-27 22:47:44] 2026-01-27 21:46:29,437 | INFO     | mean y: 2551967.6086956523
[2026-01-27 22:47:44] 2026-01-27 21:46:29,438 | INFO     | intersect: 19471515399.981342
[2026-01-27 22:47:44] 2026-01-27 21:46:29,438 | INFO     | chi2: 0.18235421148390443
[2026-01-27 22:47:44] 2026-01-27 21:46:29,438 | INFO     | current memory leak: -11.00 B/s (using 230 data points, chi2=0.18)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,439 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-01-27 22:47:44] 2026-01-27 21:46:29,439 | INFO     | ..............................
[2026-01-27 22:47:44] 2026-01-27 21:46:29,439 | INFO     | . Timing measurements:
[2026-01-27 22:47:44] 2026-01-27 21:46:29,439 | INFO     | . get job = 0 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | . initial setup = 128 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | . payload setup = 155 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | . stage-in = 0 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | . payload execution = 16339 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | . stage-out = 12 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | . log creation = 1 s
[2026-01-27 22:47:44] 2026-01-27 21:46:29,440 | INFO     | ..............................
[2026-01-27 22:47:44] 2026-01-27 21:46:30,075 | INFO     | 
[2026-01-27 22:47:44] 2026-01-27 21:46:30,075 | INFO     | job summary report
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | --------------------------------------------------
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | PanDA job id: 6984227681
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | task id: 48318026
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | errors: (none)
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | pilot state: finished 
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | transexitcode: 0
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | exeerrorcode: 0
[2026-01-27 22:47:44] 2026-01-27 21:46:30,076 | INFO     | exeerrordiag: 
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | exitcode: 0
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | exitmsg: OK
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | cpuconsumptiontime: 61458 s
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | nevents: 400
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | neventsw: 0
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | pid: 32476
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | pgrp: 32476
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | corecount: 8
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | event service: False
[2026-01-27 22:47:44] 2026-01-27 21:46:30,077 | INFO     | sizes: {0: 2283140, 1: 2283825, 2: 2284286, 13: 2284286, 16499: 2315776, 16512: 2325096}
[2026-01-27 22:47:44] 2026-01-27 21:46:30,078 | INFO     | --------------------------------------------------
[2026-01-27 22:47:44] 2026-01-27 21:46:30,078 | INFO     | 
[2026-01-27 22:47:44] 2026-01-27 21:46:30,078 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-27 22:47:44] 2026-01-27 21:46:30,528 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,528 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,528 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,528 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,528 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | job 6984227681 has completed (purged errors)
[2026-01-27 22:47:44] 2026-01-27 21:46:30,530 | INFO     | overall cleanup function is called
[2026-01-27 22:47:44] 2026-01-27 21:46:30,564 | INFO     | PID=28044 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 22:47:44] 2026-01-27 21:46:30,565 | INFO     | .. there are 2 such processes running
[2026-01-27 22:47:44] 2026-01-27 21:46:31,538 | INFO     | --- collectZombieJob: --- 10, [32476]
[2026-01-27 22:47:44] 2026-01-27 21:46:31,538 | INFO     | zombie collector waiting for pid 32476
[2026-01-27 22:47:44] 2026-01-27 21:46:31,539 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 22:47:44] 2026-01-27 21:46:31,539 | INFO     | collected zombie processes
[2026-01-27 22:47:44] 2026-01-27 21:46:31,539 | INFO     | will attempt to kill all subprocesses of pid=32476
[2026-01-27 22:47:44] 2026-01-27 21:46:31,614 | INFO     | process IDs to be killed: [32476] (in reverse order)
[2026-01-27 22:47:44] 2026-01-27 21:46:32,566 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 22:47:44] 2026-01-27 21:46:32,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 22:47:44] 2026-01-27 21:46:32,569 | INFO     | did not find any defunct processes belonging to 32476
[2026-01-27 22:47:44] 2026-01-27 21:46:32,570 | INFO     | did not find any defunct processes belonging to 32476
[2026-01-27 22:47:44] 2026-01-27 21:46:32,571 | INFO     | ready for new job
[2026-01-27 22:47:44] 2026-01-27 21:46:32,571 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 22:47:44] 2026-01-27 21:46:32,573 | INFO     | **************************************
[2026-01-27 22:47:44] 2026-01-27 21:46:32,573 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 22:47:44] 2026-01-27 21:46:32,573 | INFO     | **************************************
[2026-01-27 22:47:44] 2026-01-27 21:46:32,573 | INFO     | 
[2026-01-27 22:47:44] 2026-01-27 21:46:32,574 | INFO     | pilot is running in a VM
[2026-01-27 22:47:44] 2026-01-27 21:46:32,574 | INFO     | architecture information:
[2026-01-27 22:47:44] 2026-01-27 21:46:32,582 | INFO     | executing command: cat /etc/os-release
[2026-01-27 22:47:44] 2026-01-27 21:46:32,822 | INFO     | cat /etc/os-release:
[2026-01-27 22:47:44] NAME="CentOS Linux"
[2026-01-27 22:47:44] VERSION="7 (Core)"
[2026-01-27 22:47:44] ID="centos"
[2026-01-27 22:47:44] ID_LIKE="rhel fedora"
[2026-01-27 22:47:44] VERSION_ID="7"
[2026-01-27 22:47:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 22:47:44] ANSI_COLOR="0;31"
[2026-01-27 22:47:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 22:47:44] HOME_URL="https://www.centos.org/"
[2026-01-27 22:47:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 22:47:44] 
[2026-01-27 22:47:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 22:47:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 22:47:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 22:47:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 22:47:44] 
[2026-01-27 22:47:44] 2026-01-27 21:46:32,822 | INFO     | **************************************
[2026-01-27 22:47:44] 2026-01-27 21:46:33,325 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-27 22:47:44] 2026-01-27 21:46:33,896 | INFO     | sufficient remaining disk space (496061382656 B)
[2026-01-27 22:47:44] 2026-01-27 21:46:33,896 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 22:47:44] 2026-01-27 21:46:33,896 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 22:47:44] 2026-01-27 21:46:33,897 | INFO     | update_server=False
[2026-01-27 22:47:44] 2026-01-27 21:46:33,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 22:47:44] 2026-01-27 21:46:33,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 22:47:44] 2026-01-27 21:46:33,897 | INFO     | aborting loop
[2026-01-27 22:47:44] 2026-01-27 21:46:33,957 | INFO     | all payload control threads have been joined
[2026-01-27 22:47:44] 2026-01-27 21:46:34,042 | INFO     | all job control threads have been joined
[2026-01-27 22:47:44] 2026-01-27 21:46:34,448 | INFO     | all data control threads have been joined
[2026-01-27 22:47:44] 2026-01-27 21:46:34,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 22:47:44] 2026-01-27 21:46:34,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 22:47:44] 2026-01-27 21:46:34,902 | INFO     | [job] retrieve thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:34,903 | INFO     | [job] job monitor thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:34,963 | INFO     | [payload] control thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,048 | INFO     | [job] control thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,277 | INFO     | [payload] failed_post thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 22:47:44] 2026-01-27 21:46:35,412 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,454 | INFO     | [data] control thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,579 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,635 | INFO     | [job] queue monitor thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:35,683 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:36,253 | INFO     | [job] validate thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:36,258 | INFO     | [payload] validate_post thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:36,364 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:36,376 | INFO     | [data] copytool_in thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:36,775 | INFO     | [data] copytool_out thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:46:39,407 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 22:47:44] 2026-01-27 21:47:02,760 | INFO     | PID=28044 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 22:47:44] 2026-01-27 21:47:02,760 | INFO     | .. there are 2 such processes running
[2026-01-27 22:47:44] 2026-01-27 21:47:02,761 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 22:47:44] 2026-01-27 21:47:02,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 22:47:44] 2026-01-27 21:47:02,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 22:47:44] 2026-01-27 21:47:31,703 | INFO     | [monitor] cgroup control has ended
[2026-01-27 22:47:44] 2026-01-27 21:47:33,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056257607488)>', '<ExcThread(monitor, started 140055955875584)>']
[2026-01-27 22:47:44] 2026-01-27 21:47:33,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 22:47:44] 2026-01-27 21:47:33,947 | INFO     | [monitor] control thread has ended
[2026-01-27 22:47:44] 2026-01-27 21:47:38,231 | INFO     | all workflow threads have been joined
[2026-01-27 22:47:44] 2026-01-27 21:47:38,231 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 22:47:44] 2026-01-27 21:47:38,232 | INFO     | traces error code: 0
[2026-01-27 22:47:44] 2026-01-27 21:47:38,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 22:47:44] 2026-01-27 21:47:38,748 [wrapper] ==== pilot stdout END ====
[2026-01-27 22:47:44] 2026-01-27 21:47:38,834 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 22:47:44] 2026-01-27 21:47:38,939 [wrapper] pilotpid: 28044
[2026-01-27 22:47:44] 2026-01-27 21:47:39,030 [wrapper] Pilot exit status: 0
[2026-01-27 22:47:44] 2026-01-27 21:47:39,544 [wrapper] pandaids: 6984227681
[2026-01-27 22:47:44] 2026-01-27 21:47:40,607 [wrapper] cleanup supervisor_pilot  6408 28045
[2026-01-27 22:47:44] 2026-01-27 21:47:40,725 [wrapper] Test setup, not cleaning
[2026-01-27 22:47:44] 2026-01-27 21:47:40,841 [wrapper] apfmon messages muted
[2026-01-27 22:47:44] 2026-01-27 21:47:40,932 [wrapper] ==== wrapper stdout END ====
[2026-01-27 22:47:44] 2026-01-27 21:47:41,008 [wrapper] ==== wrapper stderr END ====
[2026-01-27 22:47:44]  *** Error codes and diagnostics ***
[2026-01-27 22:47:44]     "exeErrorCode": 0,
[2026-01-27 22:47:44]     "exeErrorDiag": "",
[2026-01-27 22:47:44]     "pilotErrorCode": 0,
[2026-01-27 22:47:44]     "pilotErrorDiag": "",
[2026-01-27 22:47:44]  *** Listing of results directory ***
[2026-01-27 22:47:44] total 728300
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc    584422 Jan 26 12:54 pilot3.tar.gz
[2026-01-27 22:47:44] -rwx------. 1 boinc boinc     36322 Jan 26 12:56 runpilot2-wrapper.sh
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc      5111 Jan 26 12:58 queuedata.json
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc       100 Jan 27 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 22:47:44] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 18:04 run_atlas
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc       105 Jan 27 18:04 job.xml
[2026-01-27 22:47:44] -rw-r--r--. 2 boinc boinc 530159633 Jan 27 18:04 EVNT.48318024._000019.pool.root.1
[2026-01-27 22:47:44] -rw-r--r--. 2 boinc boinc     15845 Jan 27 18:04 start_atlas.sh
[2026-01-27 22:47:44] drwxrwx--x. 2 boinc boinc        68 Jan 27 18:04 shared
[2026-01-27 22:47:44] -rw-r--r--. 2 boinc boinc    597761 Jan 27 18:04 input.tar.gz
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc      6391 Jan 27 18:04 init_data.xml
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc         0 Jan 27 18:04 boinc_lockfile
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc      2522 Jan 27 18:04 pandaJob.out
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc       415 Jan 27 18:10 workernode_map.json
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc   1005178 Jan 27 18:11 agis_schedconf.cvmfs.json
[2026-01-27 22:47:44] drwx------. 5 boinc boinc      4096 Jan 27 18:11 pilot3
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc 205999576 Jan 27 22:44 HITS.48318026._000912.pool.root.1
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc       532 Jan 27 22:45 boinc_task_state.xml
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc      1011 Jan 27 22:46 memory_monitor_summary.json
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc   1516246 Jan 27 22:46 agis_ddmendpoints.agis.ALL.json
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc    531907 Jan 27 22:46 log.48318026._000912.job.log.tgz.1
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc      6318 Jan 27 22:46 heartbeat.json
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc        95 Jan 27 22:47 pilot_heartbeat.json
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc      8192 Jan 27 22:47 boinc_mmap_file
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc        28 Jan 27 22:47 wrapper_checkpoint.txt
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc      4880 Jan 27 22:47 pilotlog.txt
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc   2317704 Jan 27 22:47 log.48318026._000912.job.log.1
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc       357 Jan 27 22:47 output.list
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc       620 Jan 27 22:47 runtime_log
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc   2867200 Jan 27 22:47 result.tar.gz
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc       656 Jan 27 22:47 sbBODmjNa48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVF3KDmTelVwm.diag
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc      8816 Jan 27 22:47 runtime_log.err
[2026-01-27 22:47:44] -rw-r--r--. 1 boinc boinc     20711 Jan 27 22:47 stderr.txt
[2026-01-27 22:47:44] HITS file was successfully produced:
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc 205999576 Jan 27 22:44 shared/HITS.pool.root.1
[2026-01-27 22:47:44]  *** Contents of shared directory: ***
[2026-01-27 22:47:44] total 722308
[2026-01-27 22:47:44] -rw-r--r--. 2 boinc boinc 530159633 Jan 27 18:04 ATLAS.root_0
[2026-01-27 22:47:44] -rw-r--r--. 2 boinc boinc     15845 Jan 27 18:04 start_atlas.sh
[2026-01-27 22:47:44] -rw-r--r--. 2 boinc boinc    597761 Jan 27 18:04 input.tar.gz
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc 205999576 Jan 27 22:44 HITS.pool.root.1
[2026-01-27 22:47:44] -rw-------. 1 boinc boinc   2867200 Jan 27 22:47 result.tar.gz
22:47:45 (24055): run_atlas exited; CPU time 61620.630373
22:47:45 (24055): called boinc_finish(0)

</stderr_txt>
]]>

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