Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:24:25 (29961): wrapper (7.7.26015): starting
16:24:25 (29961): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 16:24:25] Arguments: --nthreads 8
[2026-01-27 16:24:25] Threads: 8
[2026-01-27 16:24:25] Checking for CVMFS
[2026-01-27 16:24:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 16:24:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 16:24:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 16:24:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 16:24:28] 2.11.2.0 9107 61510 136016 155589 3 93 19189711 25165825 1088 130560 0 20693406 99.802 17109975 3104 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 16:24:28] CVMFS is ok
[2026-01-27 16:24:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 16:24:28] Checking for apptainer binary...
[2026-01-27 16:24:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 16:24:28] Running /usr/bin/apptainer --version
[2026-01-27 16:24:28] apptainer version 1.3.2-1.el7
[2026-01-27 16:24:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 16:24:45] cg-vwn398.simple-grid.lan
[2026-01-27 16:24:45] apptainer works
[2026-01-27 16:24:46] Set ATHENA_PROC_NUMBER=8
[2026-01-27 16:24:46] Set ATHENA_CORE_NUMBER=8
[2026-01-27 16:24:46] Starting ATLAS job with PandaID=6984228886
[2026-01-27 16:24:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 21:02:42]  *** The last 200 lines of the pilot log: ***
[2026-01-27 21:02:42] 2026-01-27 20:01:45,120 | INFO     | job 6984228886 has finished - writing final server update
[2026-01-27 21:02:42] 2026-01-27 20:01:45,120 | INFO     | total number of processed events: 400 (read)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,122 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6984228886/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,123 | INFO     | extracted standard info from prmon json
[2026-01-27 21:02:42] 2026-01-27 20:01:45,123 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 21:02:42] 2026-01-27 20:01:45,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 21:02:42] 2026-01-27 20:01:45,123 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 21:02:42] 2026-01-27 20:01:45,123 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 21:02:42] 2026-01-27 20:01:45,128 | INFO     | fitting pss+swap vs Time
[2026-01-27 21:02:42] 2026-01-27 20:01:45,136 | INFO     | sum of square deviations: 5576683165.5
[2026-01-27 21:02:42] 2026-01-27 20:01:45,138 | INFO     | sum of deviations: 102515380182.99998
[2026-01-27 21:02:42] 2026-01-27 20:01:45,139 | INFO     | mean x: 1769536120.5
[2026-01-27 21:02:42] 2026-01-27 20:01:45,139 | INFO     | mean y: 2442438.1526717558
[2026-01-27 21:02:42] 2026-01-27 20:01:45,139 | INFO     | intersect: -32526690517.23261
[2026-01-27 21:02:42] 2026-01-27 20:01:45,139 | INFO     | chi2: 7.6499401945636
[2026-01-27 21:02:42] 2026-01-27 20:01:45,140 | INFO     | sum of square deviations: 5263458688.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,142 | INFO     | sum of deviations: 117569634720.99997
[2026-01-27 21:02:42] 2026-01-27 20:01:45,142 | INFO     | mean x: 1769535968.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,142 | INFO     | mean y: 2449637.3229571986
[2026-01-27 21:02:42] 2026-01-27 20:01:45,143 | INFO     | intersect: -39523593923.68069
[2026-01-27 21:02:42] 2026-01-27 20:01:45,143 | INFO     | chi2: 6.942563292922235
[2026-01-27 21:02:42] 2026-01-27 20:01:45,143 | INFO     | current chi2=6.942563292922235 (change=9.246829173175234 %)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,143 | INFO     | right removable region: 256
[2026-01-27 21:02:42] 2026-01-27 20:01:45,144 | INFO     | sum of square deviations: 5263458688.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,146 | INFO     | sum of deviations: 12748588372.000011
[2026-01-27 21:02:42] 2026-01-27 20:01:45,146 | INFO     | mean x: 1769536273.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,146 | INFO     | mean y: 2486109.9766536965
[2026-01-27 21:02:42] 2026-01-27 20:01:45,146 | INFO     | intersect: -4283495958.2842455
[2026-01-27 21:02:42] 2026-01-27 20:01:45,147 | INFO     | chi2: 2.890053671514786
[2026-01-27 21:02:42] 2026-01-27 20:01:45,147 | INFO     | current chi2=2.890053671514786 (change=62.22122529051154 %)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,147 | INFO     | sum of square deviations: 4962187923.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,149 | INFO     | sum of deviations: -42435759132.50001
[2026-01-27 21:02:42] 2026-01-27 20:01:45,150 | INFO     | mean x: 1769536425.5
[2026-01-27 21:02:42] 2026-01-27 20:01:45,150 | INFO     | mean y: 2513936.773809524
[2026-01-27 21:02:42] 2026-01-27 20:01:45,150 | INFO     | intersect: 15135278494.248438
[2026-01-27 21:02:42] 2026-01-27 20:01:45,150 | INFO     | chi2: 0.9819471299495736
[2026-01-27 21:02:42] 2026-01-27 20:01:45,150 | INFO     | current chi2=0.9819471299495736 (change=66.02322165750998 %)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,151 | INFO     | sum of square deviations: 4672638308.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,153 | INFO     | sum of deviations: -45931020062.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,153 | INFO     | mean x: 1769536578.0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,153 | INFO     | mean y: 2515744.862348178
[2026-01-27 21:02:42] 2026-01-27 20:01:45,153 | INFO     | intersect: 17396676111.48168
[2026-01-27 21:02:42] 2026-01-27 20:01:45,154 | INFO     | chi2: 0.9459103720788113
[2026-01-27 21:02:42] 2026-01-27 20:01:45,154 | INFO     | current chi2=0.9459103720788113 (change=3.6699285299212425 %)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,154 | INFO     | left removable region: 30
[2026-01-27 21:02:42] 2026-01-27 20:01:45,154 | INFO     | sum of square deviations: 3579276412.5
[2026-01-27 21:02:42] 2026-01-27 20:01:45,162 | INFO     | sum of deviations: -5061284649.500002
[2026-01-27 21:02:42] 2026-01-27 20:01:45,162 | INFO     | mean x: 1769536852.5
[2026-01-27 21:02:42] 2026-01-27 20:01:45,162 | INFO     | mean y: 2510587.128318584
[2026-01-27 21:02:42] 2026-01-27 20:01:45,162 | INFO     | intersect: 2504728542.971314
[2026-01-27 21:02:42] 2026-01-27 20:01:45,163 | INFO     | chi2: 0.07301710890251296
[2026-01-27 21:02:42] 2026-01-27 20:01:45,163 | INFO     | current memory leak: -1.41 B/s (using 226 data points, chi2=0.07)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | ..............................
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . Timing measurements:
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . get job = 0 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . initial setup = 125 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . payload setup = 150 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . stage-in = 0 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . payload execution = 16067 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,164 | INFO     | . stage-out = 4 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,165 | INFO     | . log creation = 1 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,165 | INFO     | ..............................
[2026-01-27 21:02:42] 2026-01-27 20:01:45,299 | INFO     | 
[2026-01-27 21:02:42] 2026-01-27 20:01:45,299 | INFO     | job summary report
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | --------------------------------------------------
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | PanDA job id: 6984228886
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | task id: 48317952
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | errors: (none)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | pilot state: finished 
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | transexitcode: 0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | exeerrorcode: 0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | exeerrordiag: 
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | exitcode: 0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | exitmsg: OK
[2026-01-27 21:02:42] 2026-01-27 20:01:45,300 | INFO     | cpuconsumptiontime: 58702 s
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | nevents: 400
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | neventsw: 0
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | pid: 6005
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | pgrp: 6005
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | corecount: 8
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | event service: False
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | sizes: {0: 2283147, 1: 2283833, 2: 2284294, 13: 2284294, 16222: 2315751, 16223: 2315750, 16228: 2324934, 16229: 2325184}
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | --------------------------------------------------
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | 
[2026-01-27 21:02:42] 2026-01-27 20:01:45,301 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-27 21:02:42] 2026-01-27 20:01:45,323 | INFO     | time since job start (16243s) is within the limit (349056.0s)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,965 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,966 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 21:02:42] 2026-01-27 20:01:45,966 | INFO     | job 6984228886 has completed (purged errors)
[2026-01-27 21:02:42] 2026-01-27 20:01:45,966 | INFO     | overall cleanup function is called
[2026-01-27 21:02:42] 2026-01-27 20:01:46,973 | INFO     | --- collectZombieJob: --- 10, [6005]
[2026-01-27 21:02:42] 2026-01-27 20:01:46,973 | INFO     | zombie collector waiting for pid 6005
[2026-01-27 21:02:42] 2026-01-27 20:01:46,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 21:02:42] 2026-01-27 20:01:46,974 | INFO     | collected zombie processes
[2026-01-27 21:02:42] 2026-01-27 20:01:46,974 | INFO     | will attempt to kill all subprocesses of pid=6005
[2026-01-27 21:02:42] 2026-01-27 20:01:47,065 | INFO     | process IDs to be killed: [6005] (in reverse order)
[2026-01-27 21:02:42] 2026-01-27 20:01:48,094 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 21:02:42] 2026-01-27 20:01:48,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 21:02:42] 2026-01-27 20:01:48,097 | INFO     | did not find any defunct processes belonging to 6005
[2026-01-27 21:02:42] 2026-01-27 20:01:48,099 | INFO     | did not find any defunct processes belonging to 6005
[2026-01-27 21:02:42] 2026-01-27 20:01:48,099 | INFO     | ready for new job
[2026-01-27 21:02:42] 2026-01-27 20:01:48,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 21:02:42] 2026-01-27 20:01:48,101 | INFO     | **************************************
[2026-01-27 21:02:42] 2026-01-27 20:01:48,102 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 21:02:42] 2026-01-27 20:01:48,102 | INFO     | **************************************
[2026-01-27 21:02:42] 2026-01-27 20:01:48,102 | INFO     | 
[2026-01-27 21:02:42] 2026-01-27 20:01:48,103 | INFO     | pilot is running in a VM
[2026-01-27 21:02:42] 2026-01-27 20:01:48,103 | INFO     | architecture information:
[2026-01-27 21:02:42] 2026-01-27 20:01:48,109 | INFO     | executing command: cat /etc/os-release
[2026-01-27 21:02:42] 2026-01-27 20:01:48,327 | INFO     | cat /etc/os-release:
[2026-01-27 21:02:42] NAME="CentOS Linux"
[2026-01-27 21:02:42] VERSION="7 (Core)"
[2026-01-27 21:02:42] ID="centos"
[2026-01-27 21:02:42] ID_LIKE="rhel fedora"
[2026-01-27 21:02:42] VERSION_ID="7"
[2026-01-27 21:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 21:02:42] ANSI_COLOR="0;31"
[2026-01-27 21:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 21:02:42] HOME_URL="https://www.centos.org/"
[2026-01-27 21:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 21:02:42] 
[2026-01-27 21:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 21:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 21:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 21:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 21:02:42] 
[2026-01-27 21:02:42] 2026-01-27 20:01:48,328 | INFO     | **************************************
[2026-01-27 21:02:42] 2026-01-27 20:01:48,831 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-27 21:02:42] 2026-01-27 20:01:48,883 | INFO     | sufficient remaining disk space (495343108096 B)
[2026-01-27 21:02:42] 2026-01-27 20:01:48,883 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 21:02:42] 2026-01-27 20:01:48,883 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 21:02:42] 2026-01-27 20:01:48,883 | INFO     | update_server=False
[2026-01-27 21:02:42] 2026-01-27 20:01:48,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 21:02:42] 2026-01-27 20:01:48,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:02:42] 2026-01-27 20:01:48,884 | INFO     | aborting loop
[2026-01-27 21:02:42] 2026-01-27 20:01:49,551 | INFO     | all data control threads have been joined
[2026-01-27 21:02:42] 2026-01-27 20:01:49,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 21:02:42] 2026-01-27 20:01:49,778 | INFO     | all payload control threads have been joined
[2026-01-27 21:02:42] 2026-01-27 20:01:49,860 | INFO     | all job control threads have been joined
[2026-01-27 21:02:42] 2026-01-27 20:01:49,889 | INFO     | [job] retrieve thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:49,890 | INFO     | [job] job monitor thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:49,960 | INFO     | [data] copytool_in thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:50,064 | INFO     | [job] validate thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:50,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:02:42] 2026-01-27 20:01:50,557 | INFO     | [data] control thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:50,784 | INFO     | [payload] control thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:50,866 | INFO     | [job] control thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:50,969 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,041 | INFO     | [payload] failed_post thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,068 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 21:02:42] 2026-01-27 20:01:51,138 | INFO     | [payload] validate_post thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,180 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,276 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,325 | INFO     | [job] queue monitor thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:51,720 | INFO     | [data] copytool_out thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:01:55,142 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 21:02:42] 2026-01-27 20:02:18,464 | INFO     | PID=1553 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 21:02:42] 2026-01-27 20:02:18,464 | INFO     | .. there are 2 such processes running
[2026-01-27 21:02:42] 2026-01-27 20:02:18,464 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 21:02:42] 2026-01-27 20:02:18,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 21:02:42] 2026-01-27 20:02:18,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 21:02:42] 2026-01-27 20:02:29,839 | INFO     | [monitor] cgroup control has ended
[2026-01-27 21:02:42] 2026-01-27 20:02:31,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409703905088)>', '<ExcThread(monitor, started 140409032394496)>']
[2026-01-27 21:02:42] 2026-01-27 20:02:32,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 21:02:42] 2026-01-27 20:02:32,548 | INFO     | [monitor] control thread has ended
[2026-01-27 21:02:42] 2026-01-27 20:02:36,798 | INFO     | all workflow threads have been joined
[2026-01-27 21:02:42] 2026-01-27 20:02:36,798 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 21:02:42] 2026-01-27 20:02:36,799 | INFO     | traces error code: 0
[2026-01-27 21:02:42] 2026-01-27 20:02:36,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 21:02:42] 2026-01-27 20:02:37,205 [wrapper] ==== pilot stdout END ====
[2026-01-27 21:02:42] 2026-01-27 20:02:37,260 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 21:02:42] 2026-01-27 20:02:37,375 [wrapper] pilotpid: 1553
[2026-01-27 21:02:42] 2026-01-27 20:02:37,470 [wrapper] Pilot exit status: 0
[2026-01-27 21:02:42] 2026-01-27 20:02:37,932 [wrapper] pandaids: 6984228886
[2026-01-27 21:02:42] 2026-01-27 20:02:38,974 [wrapper] cleanup supervisor_pilot 13195 1554
[2026-01-27 21:02:42] 2026-01-27 20:02:39,076 [wrapper] Test setup, not cleaning
[2026-01-27 21:02:42] 2026-01-27 20:02:39,126 [wrapper] apfmon messages muted
[2026-01-27 21:02:42] 2026-01-27 20:02:39,257 [wrapper] ==== wrapper stdout END ====
[2026-01-27 21:02:42] 2026-01-27 20:02:39,335 [wrapper] ==== wrapper stderr END ====
[2026-01-27 21:02:42]  *** Error codes and diagnostics ***
[2026-01-27 21:02:42]     "exeErrorCode": 0,
[2026-01-27 21:02:42]     "exeErrorDiag": "",
[2026-01-27 21:02:42]     "pilotErrorCode": 0,
[2026-01-27 21:02:42]     "pilotErrorDiag": "",
[2026-01-27 21:02:42]  *** Listing of results directory ***
[2026-01-27 21:02:42] total 675964
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc    584422 Jan 26 12:54 pilot3.tar.gz
[2026-01-27 21:02:42] -rwx------. 1 boinc boinc     36322 Jan 26 12:57 runpilot2-wrapper.sh
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc      5111 Jan 26 13:00 queuedata.json
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc       100 Jan 27 16:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 21:02:42] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 16:24 run_atlas
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc       105 Jan 27 16:24 job.xml
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc      6391 Jan 27 16:24 init_data.xml
[2026-01-27 21:02:42] -rw-r--r--. 2 boinc boinc 499591984 Jan 27 16:24 EVNT.48317949._000027.pool.root.1
[2026-01-27 21:02:42] -rw-r--r--. 2 boinc boinc     15845 Jan 27 16:24 start_atlas.sh
[2026-01-27 21:02:42] drwxrwx--x. 2 boinc boinc        68 Jan 27 16:24 shared
[2026-01-27 21:02:42] -rw-r--r--. 2 boinc boinc    597759 Jan 27 16:24 input.tar.gz
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc         0 Jan 27 16:24 boinc_lockfile
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc      2519 Jan 27 16:24 pandaJob.out
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc       415 Jan 27 16:30 workernode_map.json
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc   1005162 Jan 27 16:31 agis_schedconf.cvmfs.json
[2026-01-27 21:02:42] drwx------. 5 boinc boinc      4096 Jan 27 16:31 pilot3
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc 183111039 Jan 27 21:00 HITS.48317952._001350.pool.root.1
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc       532 Jan 27 21:00 boinc_task_state.xml
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc      1011 Jan 27 21:01 memory_monitor_summary.json
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc        95 Jan 27 21:01 pilot_heartbeat.json
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc   1516246 Jan 27 21:01 agis_ddmendpoints.agis.ALL.json
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc    507137 Jan 27 21:01 log.48317952._001350.job.log.tgz.1
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc      6315 Jan 27 21:01 heartbeat.json
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc      8192 Jan 27 21:02 boinc_mmap_file
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc        28 Jan 27 21:02 wrapper_checkpoint.txt
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc      4880 Jan 27 21:02 pilotlog.txt
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc   2273692 Jan 27 21:02 log.48317952._001350.job.log.1
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc       357 Jan 27 21:02 output.list
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc       620 Jan 27 21:02 runtime_log
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc   2795520 Jan 27 21:02 result.tar.gz
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc       656 Jan 27 21:02 yruNDmsOa48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJH3KDmli0ywn.diag
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc      8832 Jan 27 21:02 runtime_log.err
[2026-01-27 21:02:42] -rw-r--r--. 1 boinc boinc     20726 Jan 27 21:02 stderr.txt
[2026-01-27 21:02:42] HITS file was successfully produced:
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc 183111039 Jan 27 21:00 shared/HITS.pool.root.1
[2026-01-27 21:02:42]  *** Contents of shared directory: ***
[2026-01-27 21:02:42] total 670036
[2026-01-27 21:02:42] -rw-r--r--. 2 boinc boinc 499591984 Jan 27 16:24 ATLAS.root_0
[2026-01-27 21:02:42] -rw-r--r--. 2 boinc boinc     15845 Jan 27 16:24 start_atlas.sh
[2026-01-27 21:02:42] -rw-r--r--. 2 boinc boinc    597759 Jan 27 16:24 input.tar.gz
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc 183111039 Jan 27 21:00 HITS.pool.root.1
[2026-01-27 21:02:42] -rw-------. 1 boinc boinc   2795520 Jan 27 21:02 result.tar.gz
21:02:44 (29961): run_atlas exited; CPU time 58877.396191
21:02:44 (29961): called boinc_finish(0)

</stderr_txt>
]]>

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