Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:23:56 (1847243): wrapper (7.7.26015): starting
19:23:56 (1847243): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 19:23:56] Arguments: --nthreads 2
[2026-01-27 19:23:56] Threads: 2
[2026-01-27 19:23:56] Checking for CVMFS
[2026-01-27 19:23:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 19:23:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 19:23:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 19:23:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 19:23:57] 2.9.2.0 843047 9998 62644 155595 1 49 24741140 36864000 0 130560 0 3002911 99.980 328894 7676 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 19:23:57] CVMFS is ok
[2026-01-27 19:23:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 19:23:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 19:23:57] Further information can be found at the LHC@home message board.
[2026-01-27 19:23:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 19:23:57] Checking for apptainer binary...
[2026-01-27 19:23:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 19:23:57] Running /usr/bin/apptainer --version
[2026-01-27 19:23:57] apptainer version 1.4.1-1.1
[2026-01-27 19:23:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 19:23:57] thA331
[2026-01-27 19:23:57] apptainer works
[2026-01-27 19:23:57] Set ATHENA_PROC_NUMBER=2
[2026-01-27 19:23:57] Set ATHENA_CORE_NUMBER=2
[2026-01-27 19:23:57] Starting ATLAS job with PandaID=6984043264
[2026-01-27 19:23:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 21:43:36]  *** The last 200 lines of the pilot log: ***
[2026-01-27 21:43:36] 2026-01-27 20:42:43,655 | INFO     | job 6984043264 has completed (purged errors)
[2026-01-27 21:43:36] 2026-01-27 20:42:43,655 | INFO     | overall cleanup function is called
[2026-01-27 21:43:36] 2026-01-27 20:42:44,660 | INFO     | --- collectZombieJob: --- 10, [1855670]
[2026-01-27 21:43:36] 2026-01-27 20:42:44,661 | INFO     | zombie collector waiting for pid 1855670
[2026-01-27 21:43:36] 2026-01-27 20:42:44,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 21:43:36] 2026-01-27 20:42:44,661 | INFO     | collected zombie processes
[2026-01-27 21:43:36] 2026-01-27 20:42:44,661 | INFO     | will attempt to kill all subprocesses of pid=1855670
[2026-01-27 21:43:36] 2026-01-27 20:42:44,695 | INFO     | process IDs to be killed: [1855670] (in reverse order)
[2026-01-27 21:43:36] 2026-01-27 20:42:44,716 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 21:43:36] 2026-01-27 20:42:44,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 21:43:36] 2026-01-27 20:42:44,717 | INFO     | did not find any defunct processes belonging to 1855670
[2026-01-27 21:43:36] 2026-01-27 20:42:44,717 | INFO     | did not find any defunct processes belonging to 1855670
[2026-01-27 21:43:36] 2026-01-27 20:42:44,717 | INFO     | ready for new job
[2026-01-27 21:43:36] 2026-01-27 20:42:44,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 21:43:36] 2026-01-27 20:42:44,718 | INFO     | **************************************
[2026-01-27 21:43:36] 2026-01-27 20:42:44,718 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 21:43:36] 2026-01-27 20:42:44,718 | INFO     | **************************************
[2026-01-27 21:43:36] 2026-01-27 20:42:44,718 | INFO     | 
[2026-01-27 21:43:36] 2026-01-27 20:42:44,718 | INFO     | architecture information:
[2026-01-27 21:43:36] 2026-01-27 20:42:44,718 | INFO     | executing command: cat /etc/os-release
[2026-01-27 21:43:36] 2026-01-27 20:42:44,727 | INFO     | cat /etc/os-release:
[2026-01-27 21:43:36] NAME="CentOS Linux"
[2026-01-27 21:43:36] VERSION="7 (Core)"
[2026-01-27 21:43:36] ID="centos"
[2026-01-27 21:43:36] ID_LIKE="rhel fedora"
[2026-01-27 21:43:36] VERSION_ID="7"
[2026-01-27 21:43:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 21:43:36] ANSI_COLOR="0;31"
[2026-01-27 21:43:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 21:43:36] HOME_URL="https://www.centos.org/"
[2026-01-27 21:43:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 21:43:36] 
[2026-01-27 21:43:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 21:43:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 21:43:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 21:43:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 21:43:36] 
[2026-01-27 21:43:36] 2026-01-27 20:42:44,727 | INFO     | **************************************
[2026-01-27 21:43:36] 2026-01-27 20:42:45,229 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | INFO     | sufficient remaining disk space (235730370560 B)
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | INFO     | update_server=False
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:43:36] 2026-01-27 20:42:45,241 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 21:43:36] 2026-01-27 20:42:45,281 | INFO     | all data control threads have been joined
[2026-01-27 21:43:36] 2026-01-27 20:42:45,547 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 21:43:36] 2026-01-27 20:42:45,547 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 21:43:36] 2026-01-27 20:42:45,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:43:36] 2026-01-27 20:42:45,548 | INFO     | will abort loop
[2026-01-27 21:43:36] 2026-01-27 20:42:45,559 | INFO     | all payload control threads have been joined
[2026-01-27 21:43:36] 2026-01-27 20:42:46,107 | INFO     | all job control threads have been joined
[2026-01-27 21:43:36] 2026-01-27 20:42:46,246 | INFO     | [job] retrieve thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,247 | INFO     | [job] queue monitor thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,282 | INFO     | [data] control thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,289 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 21:43:36] 2026-01-27 20:42:46,526 | INFO     | [data] copytool_in thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,554 | INFO     | [job] job monitor thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,564 | INFO     | [payload] control thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:46,940 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:47,112 | INFO     | [job] control thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:47,170 | INFO     | [payload] validate_post thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:47,273 | INFO     | [payload] failed_post thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:47,579 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:47,584 | INFO     | [job] validate thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:48,318 | INFO     | [data] copytool_out thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:49,248 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:42:55,799 | INFO     | job.realtimelogging is not enabled
[2026-01-27 21:43:36] 2026-01-27 20:42:56,803 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 21:43:36] 2026-01-27 20:43:15,629 | INFO     | PID=1851264 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 21:43:36] 2026-01-27 20:43:15,629 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 21:43:36] 2026-01-27 20:43:15,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 21:43:36] 2026-01-27 20:43:15,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 21:43:36] 2026-01-27 20:43:30,696 | INFO     | [monitor] cgroup control has ended
[2026-01-27 21:43:36] 2026-01-27 20:43:30,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140161030747968)>', '<ExcThread(monitor, started 140160402446080)>']
[2026-01-27 21:43:36] 2026-01-27 20:43:31,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 21:43:36] 2026-01-27 20:43:31,701 | INFO     | [monitor] control thread has ended
[2026-01-27 21:43:36] 2026-01-27 20:43:35,971 | INFO     | all workflow threads have been joined
[2026-01-27 21:43:36] 2026-01-27 20:43:35,972 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 21:43:36] 2026-01-27 20:43:35,972 | INFO     | traces error code: 0
[2026-01-27 21:43:36] 2026-01-27 20:43:35,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 21:43:36] 2026-01-27 20:43:36,017 [wrapper] ==== pilot stdout END ====
[2026-01-27 21:43:36] 2026-01-27 20:43:36,020 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 21:43:36] 2026-01-27 20:43:36,023 [wrapper] pilotpid: 1851264
[2026-01-27 21:43:36] 2026-01-27 20:43:36,025 [wrapper] Pilot exit status: 0
[2026-01-27 21:43:36] 2026-01-27 20:43:36,031 [wrapper] pandaids: 6984043264
[2026-01-27 21:43:36] 2026-01-27 20:43:36,043 [wrapper] cleanup supervisor_pilot 1861123 1851265
[2026-01-27 21:43:36] 2026-01-27 20:43:36,045 [wrapper] Test setup, not cleaning
[2026-01-27 21:43:36] 2026-01-27 20:43:36,047 [wrapper] apfmon messages muted
[2026-01-27 21:43:36] 2026-01-27 20:43:36,049 [wrapper] ==== wrapper stdout END ====
[2026-01-27 21:43:36] 2026-01-27 20:43:36,051 [wrapper] ==== wrapper stderr END ====
[2026-01-27 21:43:36]  *** Error codes and diagnostics ***
[2026-01-27 21:43:36]     "exeErrorCode": 0,
[2026-01-27 21:43:36]     "exeErrorDiag": "",
[2026-01-27 21:43:36]     "pilotErrorCode": 0,
[2026-01-27 21:43:36]     "pilotErrorDiag": "",
[2026-01-27 21:43:36]  *** Listing of results directory ***
[2026-01-27 21:43:36] total 720824
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 21:43:36] -rwx------ 1 boinc boinc     36322 Jan 26 06:17 runpilot2-wrapper.sh
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:21 queuedata.json
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc       100 Jan 27 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 21:43:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 19:23 run_atlas
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc       105 Jan 27 19:23 job.xml
[2026-01-27 21:43:36] -rw-r--r-- 2 boinc boinc 530276790 Jan 27 19:23 EVNT.48317909._000016.pool.root.1
[2026-01-27 21:43:36] -rw-r--r-- 2 boinc boinc    597751 Jan 27 19:23 input.tar.gz
[2026-01-27 21:43:36] -rw-r--r-- 2 boinc boinc     15845 Jan 27 19:23 start_atlas.sh
[2026-01-27 21:43:36] drwxrwx--x 2 boinc boinc      4096 Jan 27 19:23 shared
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc         0 Jan 27 19:23 boinc_setup_complete
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc      6206 Jan 27 19:23 init_data.xml
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc         0 Jan 27 19:23 boinc_lockfile
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc      2499 Jan 27 19:23 pandaJob.out
[2026-01-27 21:43:36] -rw------- 1 boinc boinc   1005244 Jan 27 19:24 agis_schedconf.cvmfs.json
[2026-01-27 21:43:36] -rw------- 1 boinc boinc   1516246 Jan 27 19:24 agis_ddmendpoints.agis.ALL.json
[2026-01-27 21:43:36] -rw------- 1 boinc boinc       418 Jan 27 19:24 workernode_map.json
[2026-01-27 21:43:36] drwx------ 5 boinc boinc      4096 Jan 27 19:24 pilot3
[2026-01-27 21:43:36] -rw------- 1 boinc boinc 200898610 Jan 27 21:42 HITS.48317911._000613.pool.root.1
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc       530 Jan 27 21:42 boinc_task_state.xml
[2026-01-27 21:43:36] -rw------- 1 boinc boinc      1010 Jan 27 21:42 memory_monitor_summary.json
[2026-01-27 21:43:36] -rw------- 1 boinc boinc    322881 Jan 27 21:42 log.48317911._000613.job.log.tgz.1
[2026-01-27 21:43:36] -rw------- 1 boinc boinc      6291 Jan 27 21:42 heartbeat.json
[2026-01-27 21:43:36] -rw------- 1 boinc boinc        95 Jan 27 21:43 pilot_heartbeat.json
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc      8192 Jan 27 21:43 boinc_mmap_file
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc        27 Jan 27 21:43 wrapper_checkpoint.txt
[2026-01-27 21:43:36] -rw------- 1 boinc boinc      5006 Jan 27 21:43 pilotlog.txt
[2026-01-27 21:43:36] -rw------- 1 boinc boinc   1187537 Jan 27 21:43 log.48317911._000613.job.log.1
[2026-01-27 21:43:36] -rw------- 1 boinc boinc       357 Jan 27 21:43 output.list
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc       620 Jan 27 21:43 runtime_log
[2026-01-27 21:43:36] -rw------- 1 boinc boinc   1525760 Jan 27 21:43 result.tar.gz
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc      8896 Jan 27 21:43 runtime_log.err
[2026-01-27 21:43:36] -rw------- 1 boinc boinc       658 Jan 27 21:43 dSHLDm59T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdf2KDmnHCWFm.diag
[2026-01-27 21:43:36] -rw-r--r-- 1 boinc boinc     11131 Jan 27 21:43 stderr.txt
[2026-01-27 21:43:36] HITS file was successfully produced:
[2026-01-27 21:43:36] -rw------- 1 boinc boinc 200898610 Jan 27 21:42 shared/HITS.pool.root.1
[2026-01-27 21:43:36]  *** Contents of shared directory: ***
[2026-01-27 21:43:36] total 716144
[2026-01-27 21:43:36] -rw-r--r-- 2 boinc boinc 530276790 Jan 27 19:23 ATLAS.root_0
[2026-01-27 21:43:36] -rw-r--r-- 2 boinc boinc    597751 Jan 27 19:23 input.tar.gz
[2026-01-27 21:43:36] -rw-r--r-- 2 boinc boinc     15845 Jan 27 19:23 start_atlas.sh
[2026-01-27 21:43:36] -rw------- 1 boinc boinc 200898610 Jan 27 21:42 HITS.pool.root.1
[2026-01-27 21:43:36] -rw------- 1 boinc boinc   1525760 Jan 27 21:43 result.tar.gz
21:43:37 (1847243): run_atlas exited; CPU time 16210.734253
21:43:37 (1847243): called boinc_finish(0)

</stderr_txt>
]]>

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