Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:05 (427963): wrapper (7.7.26015): starting
08:25:05 (427963): wrapper: running run_atlas (--nthreads 6)
[2026-01-27 08:25:05] Arguments: --nthreads 6
[2026-01-27 08:25:05] Threads: 6
[2026-01-27 08:25:05] Checking for CVMFS
[2026-01-27 08:25:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 08:25:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 08:25:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 08:25:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 08:25:06] 2.13.3.0 240502 781 53764 155577 0 50 24559088 81920000 0 130560 0 624865 99.988 33283 7260 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2026-01-27 08:25:06] CVMFS is ok
[2026-01-27 08:25:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 08:25:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 08:25:06] Further information can be found at the LHC@home message board.
[2026-01-27 08:25:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 08:25:06] Checking for apptainer binary...
[2026-01-27 08:25:06] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2026-01-27 08:25:06] apptainer is not installed, using version from CVMFS
[2026-01-27 08:25:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 08:25:06] monitor-atlas.iep
[2026-01-27 08:25:06] apptainer works
[2026-01-27 08:25:06] Set ATHENA_PROC_NUMBER=6
[2026-01-27 08:25:06] Set ATHENA_CORE_NUMBER=6
[2026-01-27 08:25:06] Starting ATLAS job with PandaID=6984063266
[2026-01-27 08:25:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 09:17:29]  *** The last 200 lines of the pilot log: ***
[2026-01-27 09:17:29]  guid=e624dd83-3cd6-449d-b00f-a3003af77697
[2026-01-27 09:17:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 09:17:29]  is_altstaged=None
[2026-01-27 09:17:29]  is_tar=False
[2026-01-27 09:17:29]  lfn=log.48317952._000726.job.log.tgz.1
[2026-01-27 09:17:29]  mtime=0
[2026-01-27 09:17:29]  protocol_id=None
[2026-01-27 09:17:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 09:17:29]  replicas=None
[2026-01-27 09:17:29]  scope=mc23_13p6TeV
[2026-01-27 09:17:29]  status=None
[2026-01-27 09:17:29]  status_code=0
[2026-01-27 09:17:29]  storage_token=
[2026-01-27 09:17:29]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6984063266/log.48317952._000726.job.log.tgz.1
[2026-01-27 09:17:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/c3/log.48317952._000726.job.log.tgz.1
[2026-01-27 09:17:29]  workdir=None
[2026-01-27 09:17:29] ]
[2026-01-27 09:17:29] 2026-01-27 08:16:38,053 | INFO     | transferring file log.48317952._000726.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6984063266/log.48317952._000726.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-27 09:17:29] 2026-01-27 08:16:38,053 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6984063266/log.48317952._000726.job.log.tgz.1 /var/lib/boinc/slots/0/log.48317952._000726.job
[2026-01-27 09:17:29] 2026-01-27 08:16:38,061 | INFO     | adding to output.list: log.48317952._000726.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/c3/log.48317952._000726.job.log.tg
[2026-01-27 09:17:29] 2026-01-27 08:16:38,061 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 09:17:29] 2026-01-27 08:16:38,061 | INFO     | summary of transferred files:
[2026-01-27 09:17:29] 2026-01-27 08:16:38,061 | INFO     |  -- lfn=log.48317952._000726.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 09:17:29] 2026-01-27 08:16:38,061 | INFO     | stage-out finished correctly
[2026-01-27 09:17:29] 2026-01-27 08:16:39,156 | INFO     | time since job start (3081s) is within the limit (349056.0s)
[2026-01-27 09:17:29] 2026-01-27 08:16:39,825 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 09:17:29] 2026-01-27 08:16:40,421 | INFO     | job 6984063266 has state=finished
[2026-01-27 09:17:29] 2026-01-27 08:16:40,421 | INFO     | preparing for final server update for job 6984063266 in state='finished'
[2026-01-27 09:17:29] 2026-01-27 08:16:40,421 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-6984063266/jobReport.json
[2026-01-27 09:17:29] 2026-01-27 08:16:40,422 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-01-27 09:17:29] 2026-01-27 08:16:40,422 | INFO     | this job has now completed (state=finished)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,422 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,422 | INFO     | log transfer has been attempted: DONE
[2026-01-27 09:17:29] 2026-01-27 08:16:40,422 | INFO     | job 6984063266 has finished - writing final server update
[2026-01-27 09:17:29] 2026-01-27 08:16:40,422 | INFO     | total number of processed events: 400 (read)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,423 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6984063266/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,423 | INFO     | extracted standard info from prmon json
[2026-01-27 09:17:29] 2026-01-27 08:16:40,423 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 09:17:29] 2026-01-27 08:16:40,423 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 09:17:29] 2026-01-27 08:16:40,423 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 09:17:29] 2026-01-27 08:16:40,423 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | fitting pss+swap vs Time
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | sum of square deviations: 26400495.0
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | sum of deviations: -329847099.5
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | mean x: 1769500349.5
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | mean y: 2882992.340909091
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | intersect: 22110974444.67206
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | chi2: 0.020898501439134142
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | current memory leak: -12.49 B/s (using 44 data points, chi2=0.02)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | could have reported an average CPU frequency of 4299 MHz (5 samples)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | ..............................
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | . Timing measurements:
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | . get job = 0 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | . initial setup = 3 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | . payload setup = 1 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | . stage-in = 0 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,424 | INFO     | . payload execution = 3063 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,425 | INFO     | . stage-out = 0 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,425 | INFO     | . log creation = 0 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,425 | INFO     | ..............................
[2026-01-27 09:17:29] 2026-01-27 08:16:40,644 | INFO     | 
[2026-01-27 09:17:29] 2026-01-27 08:16:40,644 | INFO     | job summary report
[2026-01-27 09:17:29] 2026-01-27 08:16:40,644 | INFO     | --------------------------------------------------
[2026-01-27 09:17:29] 2026-01-27 08:16:40,644 | INFO     | PanDA job id: 6984063266
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | task id: 48317952
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | errors: (none)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | pilot state: finished 
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | transexitcode: 0
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | exeerrorcode: 0
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | exeerrordiag: 
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | exitcode: 0
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | exitmsg: OK
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | cpuconsumptiontime: 17332 s
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | nevents: 400
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | neventsw: 0
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | pid: 436455
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | pgrp: 436455
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | corecount: 6
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | event service: False
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | sizes: {0: 2283141, 1: 2284259, 11: 2284259, 3069: 2318759, 3071: 2318759, 3072: 2318985}
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | --------------------------------------------------
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | 
[2026-01-27 09:17:29] 2026-01-27 08:16:40,645 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | job 6984063266 has completed (purged errors)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,654 | INFO     | overall cleanup function is called
[2026-01-27 09:17:29] 2026-01-27 08:16:40,893 | WARNING  | process 436455 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 09:17:29] 2026-01-27 08:16:40,918 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 09:17:29] 2026-01-27 08:16:40,949 | INFO     | number of running child processes to parent process 436455: 1
[2026-01-27 09:17:29] 2026-01-27 08:16:40,949 | INFO     | maximum number of monitored processes: 6
[2026-01-27 09:17:29] 2026-01-27 08:16:40,949 | INFO     | aborting job monitoring since job object (job id=6984063266) has expired
[2026-01-27 09:17:29] 2026-01-27 08:16:41,660 | INFO     | --- collectZombieJob: --- 10, [436455]
[2026-01-27 09:17:29] 2026-01-27 08:16:41,660 | INFO     | zombie collector waiting for pid 436455
[2026-01-27 09:17:29] 2026-01-27 08:16:41,660 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 09:17:29] 2026-01-27 08:16:41,660 | INFO     | collected zombie processes
[2026-01-27 09:17:29] 2026-01-27 08:16:41,660 | INFO     | will attempt to kill all subprocesses of pid=436455
[2026-01-27 09:17:29] 2026-01-27 08:16:41,691 | INFO     | process IDs to be killed: [436455] (in reverse order)
[2026-01-27 09:17:29] 2026-01-27 08:16:41,707 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 09:17:29] 2026-01-27 08:16:41,708 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 09:17:29] 2026-01-27 08:16:41,708 | INFO     | did not find any defunct processes belonging to 436455
[2026-01-27 09:17:29] 2026-01-27 08:16:41,709 | INFO     | did not find any defunct processes belonging to 436455
[2026-01-27 09:17:29] 2026-01-27 08:16:41,709 | INFO     | ready for new job
[2026-01-27 09:17:29] 2026-01-27 08:16:41,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 09:17:29] 2026-01-27 08:16:41,710 | INFO     | **************************************
[2026-01-27 09:17:29] 2026-01-27 08:16:41,710 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 09:17:29] 2026-01-27 08:16:41,710 | INFO     | **************************************
[2026-01-27 09:17:29] 2026-01-27 08:16:41,710 | INFO     | 
[2026-01-27 09:17:29] 2026-01-27 08:16:41,710 | INFO     | architecture information:
[2026-01-27 09:17:29] 2026-01-27 08:16:41,710 | INFO     | executing command: cat /etc/os-release
[2026-01-27 09:17:29] 2026-01-27 08:16:41,716 | INFO     | cat /etc/os-release:
[2026-01-27 09:17:29] NAME="CentOS Linux"
[2026-01-27 09:17:29] VERSION="7 (Core)"
[2026-01-27 09:17:29] ID="centos"
[2026-01-27 09:17:29] ID_LIKE="rhel fedora"
[2026-01-27 09:17:29] VERSION_ID="7"
[2026-01-27 09:17:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 09:17:29] ANSI_COLOR="0;31"
[2026-01-27 09:17:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 09:17:29] HOME_URL="https://www.centos.org/"
[2026-01-27 09:17:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 09:17:29] 
[2026-01-27 09:17:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 09:17:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 09:17:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 09:17:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 09:17:29] 
[2026-01-27 09:17:29] 2026-01-27 08:16:41,716 | INFO     | **************************************
[2026-01-27 09:17:29] 2026-01-27 08:16:42,219 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | INFO     | sufficient remaining disk space (863918620672 B)
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | INFO     | update_server=False
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | INFO     | aborting loop
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:17:29] 2026-01-27 08:16:42,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 09:17:29] 2026-01-27 08:16:42,571 | INFO     | all job control threads have been joined
[2026-01-27 09:17:29] 2026-01-27 08:16:42,670 | INFO     | all data control threads have been joined
[2026-01-27 09:17:29] 2026-01-27 08:16:43,230 | INFO     | [job] queue monitor thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,230 | INFO     | [job] retrieve thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,230 | INFO     | [job] job monitor thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,291 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,300 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,395 | INFO     | [data] copytool_in thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,410 | INFO     | all payload control threads have been joined
[2026-01-27 09:17:29] 2026-01-27 08:16:43,577 | INFO     | [job] control thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,599 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 09:17:29] 2026-01-27 08:16:43,601 | INFO     | [payload] validate_post thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:43,675 | INFO     | [data] control thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:44,415 | INFO     | [payload] control thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:44,508 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:44,654 | INFO     | [payload] failed_post thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:44,721 | INFO     | [job] validate thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:45,604 | INFO     | [data] copytool_out thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:46,231 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:16:52,752 | INFO     | job.realtimelogging is not enabled
[2026-01-27 09:17:29] 2026-01-27 08:16:53,757 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 09:17:29] 2026-01-27 08:17:12,292 | INFO     | PID=431955 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 09:17:29] 2026-01-27 08:17:12,292 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 09:17:29] 2026-01-27 08:17:12,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 09:17:29] 2026-01-27 08:17:12,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 09:17:29] 2026-01-27 08:17:23,006 | INFO     | [monitor] cgroup control has ended
[2026-01-27 09:17:29] 2026-01-27 08:17:24,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140635089721152)>', '<ExcThread(monitor, started 140634669180672)>']
[2026-01-27 09:17:29] 2026-01-27 08:17:24,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 09:17:29] 2026-01-27 08:17:24,349 | INFO     | [monitor] control thread has ended
[2026-01-27 09:17:29] 2026-01-27 08:17:29,036 | INFO     | all workflow threads have been joined
[2026-01-27 09:17:29] 2026-01-27 08:17:29,036 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 09:17:29] 2026-01-27 08:17:29,037 | INFO     | traces error code: 0
[2026-01-27 09:17:29] 2026-01-27 08:17:29,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 09:17:29] 2026-01-27 08:17:29,080 [wrapper] ==== pilot stdout END ====
[2026-01-27 09:17:29] 2026-01-27 08:17:29,081 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 09:17:29] 2026-01-27 08:17:29,081 [wrapper] pilotpid: 431955
[2026-01-27 09:17:29] 2026-01-27 08:17:29,082 [wrapper] Pilot exit status: 0
[2026-01-27 09:17:29] 2026-01-27 08:17:29,085 [wrapper] pandaids: 6984063266
[2026-01-27 09:17:29] 2026-01-27 08:17:29,094 [wrapper] cleanup supervisor_pilot  441187 431956
[2026-01-27 09:17:29] 2026-01-27 08:17:29,095 [wrapper] Test setup, not cleaning
[2026-01-27 09:17:29] 2026-01-27 08:17:29,096 [wrapper] apfmon messages muted
[2026-01-27 09:17:29] 2026-01-27 08:17:29,097 [wrapper] ==== wrapper stdout END ====
[2026-01-27 09:17:29] 2026-01-27 08:17:29,098 [wrapper] ==== wrapper stderr END ====
[2026-01-27 09:17:29]  *** Error codes and diagnostics ***
[2026-01-27 09:17:29]     "exeErrorCode": 0,
[2026-01-27 09:17:29]     "exeErrorDiag": "",
[2026-01-27 09:17:29]     "pilotErrorCode": 0,
[2026-01-27 09:17:29]     "pilotErrorDiag": "",
[2026-01-27 09:17:29]  *** Listing of results directory ***
[2026-01-27 09:17:29] total 663008
[2026-01-27 09:17:29] -rwx------ 1 boinc boinc     36322 Jan 26 08:41 runpilot2-wrapper.sh
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc    584422 Jan 26 08:45 pilot3.tar.gz
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc      5111 Jan 26 08:45 queuedata.json
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc       100 Jan 27 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 09:17:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 08:25 run_atlas
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc       105 Jan 27 08:25 job.xml
[2026-01-27 09:17:29] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:25 start_atlas.sh
[2026-01-27 09:17:29] drwxrwx--x 2 boinc boinc        68 Jan 27 08:25 shared
[2026-01-27 09:17:29] -rw-r--r-- 2 boinc boinc    597753 Jan 27 08:25 input.tar.gz
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc      6533 Jan 27 08:25 init_data.xml
[2026-01-27 09:17:29] -rw-r--r-- 2 boinc boinc 493558325 Jan 27 08:25 EVNT.48317949._000015.pool.root.1
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:25 boinc_lockfile
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc      2516 Jan 27 08:25 pandaJob.out
[2026-01-27 09:17:29] -rw------- 1 boinc boinc   1003573 Jan 27 08:25 agis_schedconf.cvmfs.json
[2026-01-27 09:17:29] -rw------- 1 boinc boinc   1516246 Jan 27 08:25 agis_ddmendpoints.agis.ALL.json
[2026-01-27 09:17:29] -rw------- 1 boinc boinc       436 Jan 27 08:25 workernode_map.json
[2026-01-27 09:17:29] drwx------ 5 boinc boinc      4096 Jan 27 08:25 pilot3
[2026-01-27 09:17:29] -rw------- 1 boinc boinc 179974776 Jan 27 09:16 HITS.48317952._000726.pool.root.1
[2026-01-27 09:17:29] -rw------- 1 boinc boinc        95 Jan 27 09:16 pilot_heartbeat.json
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc       530 Jan 27 09:16 boinc_task_state.xml
[2026-01-27 09:17:29] -rw------- 1 boinc boinc      1023 Jan 27 09:16 memory_monitor_summary.json
[2026-01-27 09:17:29] -rw------- 1 boinc boinc    258886 Jan 27 09:16 log.48317952._000726.job.log.tgz.1
[2026-01-27 09:17:29] -rw------- 1 boinc boinc      6344 Jan 27 09:16 heartbeat.json
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc      8192 Jan 27 09:17 boinc_mmap_file
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc        27 Jan 27 09:17 wrapper_checkpoint.txt
[2026-01-27 09:17:29] -rw------- 1 boinc boinc      4816 Jan 27 09:17 pilotlog.txt
[2026-01-27 09:17:29] -rw------- 1 boinc boinc    470796 Jan 27 09:17 log.48317952._000726.job.log.1
[2026-01-27 09:17:29] -rw------- 1 boinc boinc       357 Jan 27 09:17 output.list
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc       620 Jan 27 09:17 runtime_log
[2026-01-27 09:17:29] -rw------- 1 boinc boinc    747520 Jan 27 09:17 result.tar.gz
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc      8829 Jan 27 09:17 runtime_log.err
[2026-01-27 09:17:29] -rw------- 1 boinc boinc       654 Jan 27 09:17 4uFLDmdPW48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8w2KDmZ8R3wn.diag
[2026-01-27 09:17:29] -rw-r--r-- 1 boinc boinc     21485 Jan 27 09:17 stderr.txt
[2026-01-27 09:17:29] HITS file was successfully produced:
[2026-01-27 09:17:29] -rw------- 1 boinc boinc 179974776 Jan 27 09:16 shared/HITS.pool.root.1
[2026-01-27 09:17:29]  *** Contents of shared directory: ***
[2026-01-27 09:17:29] total 659084
[2026-01-27 09:17:29] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:25 start_atlas.sh
[2026-01-27 09:17:29] -rw-r--r-- 2 boinc boinc    597753 Jan 27 08:25 input.tar.gz
[2026-01-27 09:17:29] -rw-r--r-- 2 boinc boinc 493558325 Jan 27 08:25 ATLAS.root_0
[2026-01-27 09:17:29] -rw------- 1 boinc boinc 179974776 Jan 27 09:16 HITS.pool.root.1
[2026-01-27 09:17:29] -rw------- 1 boinc boinc    747520 Jan 27 09:17 result.tar.gz
09:17:30 (427963): run_atlas exited; CPU time 17343.552295
09:17:30 (427963): called boinc_finish(0)

</stderr_txt>
]]>

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