Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
11:14:04 (122197): wrapper (7.7.26015): starting
11:14:04 (122197): wrapper: running run_atlas (--nthreads 12)
[2026-02-01 11:14:04] Arguments: --nthreads 12
[2026-02-01 11:14:04] Threads: 12
[2026-02-01 11:14:04] Checking for CVMFS
[2026-02-01 11:14:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 11:14:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 11:14:05] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 11:14:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 11:14:05] 2.13.3.0 2356 2569 48796 155748 0 49 2791527 4096000 912 130560 0 368033 99.966 88755 916 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-02-01 11:14:05] CVMFS is ok
[2026-02-01 11:14:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 11:14:05] Checking for apptainer binary...
[2026-02-01 11:14:05] apptainer is not installed, using version from CVMFS
[2026-02-01 11:14:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 11:14:06] i3220
[2026-02-01 11:14:06] apptainer works
[2026-02-01 11:14:06] Set ATHENA_PROC_NUMBER=12
[2026-02-01 11:14:06] Set ATHENA_CORE_NUMBER=12
[2026-02-01 11:14:06] Starting ATLAS job with PandaID=6984061967
[2026-02-01 11:14:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 20:36:37]  *** The last 200 lines of the pilot log: ***
[2026-02-01 20:36:37] 2026-02-01 20:35:50,747 | INFO     | job 6984061967 has finished - writing final server update
[2026-02-01 20:36:37] 2026-02-01 20:35:50,747 | INFO     | total number of processed events: 400 (read)
[2026-02-01 20:36:37] 2026-02-01 20:35:50,749 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6984061967/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 20:36:37] 2026-02-01 20:35:50,759 | INFO     | extracted standard info from prmon json
[2026-02-01 20:36:37] 2026-02-01 20:35:50,759 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 20:36:37] 2026-02-01 20:35:50,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 20:36:37] 2026-02-01 20:35:50,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 20:36:37] 2026-02-01 20:35:50,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 20:36:37] 2026-02-01 20:35:50,809 | INFO     | fitting pss+swap vs Time
[2026-02-01 20:36:37] 2026-02-01 20:35:50,810 | INFO     | sum of square deviations: 52154795471.954865
[2026-02-01 20:36:37] 2026-02-01 20:35:50,837 | INFO     | sum of deviations: 117316265235.94374
[2026-02-01 20:36:37] 2026-02-01 20:35:50,837 | INFO     | mean x: 1769961287.509058
[2026-02-01 20:36:37] 2026-02-01 20:35:50,838 | INFO     | mean y: 2664130.9112318843
[2026-02-01 20:36:37] 2026-02-01 20:35:50,838 | INFO     | intersect: -3978661957.7783875
[2026-02-01 20:36:37] 2026-02-01 20:35:50,838 | INFO     | chi2: 1.9464724652049599
[2026-02-01 20:36:37] 2026-02-01 20:35:50,845 | INFO     | sum of square deviations: 50750342756.95437
[2026-02-01 20:36:37] 2026-02-01 20:35:50,872 | INFO     | sum of deviations: 153780565759.30893
[2026-02-01 20:36:37] 2026-02-01 20:35:50,872 | INFO     | mean x: 1769961135.0091407
[2026-02-01 20:36:37] 2026-02-01 20:35:50,872 | INFO     | mean y: 2668060.3382084095
[2026-02-01 20:36:37] 2026-02-01 20:35:50,873 | INFO     | intersect: -5360559258.484114
[2026-02-01 20:36:37] 2026-02-01 20:35:50,873 | INFO     | chi2: 1.233299982108978
[2026-02-01 20:36:37] 2026-02-01 20:35:50,873 | INFO     | current chi2=1.233299982108978 (change=36.63922792870775 %)
[2026-02-01 20:36:37] 2026-02-01 20:35:50,874 | INFO     | sum of square deviations: 49371332379.45383
[2026-02-01 20:36:37] 2026-02-01 20:35:50,904 | INFO     | sum of deviations: 152072130248.9889
[2026-02-01 20:36:37] 2026-02-01 20:35:50,904 | INFO     | mean x: 1769960982.5092251
[2026-02-01 20:36:37] 2026-02-01 20:35:50,904 | INFO     | mean y: 2667871.4022140224
[2026-02-01 20:36:37] 2026-02-01 20:35:50,905 | INFO     | intersect: -5449114045.25889
[2026-02-01 20:36:37] 2026-02-01 20:35:50,905 | INFO     | chi2: 1.2331558094640722
[2026-02-01 20:36:37] 2026-02-01 20:35:50,906 | INFO     | current chi2=1.2331558094640722 (change=0.011689990026539171 %)
[2026-02-01 20:36:37] 2026-02-01 20:35:50,906 | INFO     | right removable region: 541
[2026-02-01 20:36:37] 2026-02-01 20:35:50,906 | INFO     | sum of square deviations: 50750339706.95437
[2026-02-01 20:36:37] 2026-02-01 20:35:50,938 | INFO     | sum of deviations: 39910322727.25413
[2026-02-01 20:36:37] 2026-02-01 20:35:50,939 | INFO     | mean x: 1769961440.0091407
[2026-02-01 20:36:37] 2026-02-01 20:35:50,939 | INFO     | mean y: 2672496.3491773307
[2026-02-01 20:36:37] 2026-02-01 20:35:50,939 | INFO     | intersect: -1389234093.7042568
[2026-02-01 20:36:37] 2026-02-01 20:35:50,949 | INFO     | chi2: 0.7274702841440128
[2026-02-01 20:36:37] 2026-02-01 20:35:50,949 | INFO     | current chi2=0.7274702841440128 (change=62.62622271066076 %)
[2026-02-01 20:36:37] 2026-02-01 20:35:50,950 | INFO     | sum of square deviations: 49371326279.45381
[2026-02-01 20:36:37] 2026-02-01 20:35:50,975 | INFO     | sum of deviations: 32328627593.47238
[2026-02-01 20:36:37] 2026-02-01 20:35:50,976 | INFO     | mean x: 1769961592.5092251
[2026-02-01 20:36:37] 2026-02-01 20:35:50,976 | INFO     | mean y: 2673334.0055350554
[2026-02-01 20:36:37] 2026-02-01 20:35:50,976 | INFO     | intersect: -1156307667.5397422
[2026-02-01 20:36:37] 2026-02-01 20:35:50,977 | INFO     | chi2: 0.7235927586806897
[2026-02-01 20:36:37] 2026-02-01 20:35:50,977 | INFO     | current chi2=0.7235927586806897 (change=0.5330149626504174 %)
[2026-02-01 20:36:37] 2026-02-01 20:35:50,977 | INFO     | left removable region: 20
[2026-02-01 20:36:37] 2026-02-01 20:35:50,987 | INFO     | sum of square deviations: 43852058448.95217
[2026-02-01 20:36:37] 2026-02-01 20:35:51,010 | INFO     | sum of deviations: 59846007983.62184
[2026-02-01 20:36:37] 2026-02-01 20:35:51,010 | INFO     | mean x: 1769961562.0095968
[2026-02-01 20:36:37] 2026-02-01 20:35:51,011 | INFO     | mean y: 2678237.6756238006
[2026-02-01 20:36:37] 2026-02-01 20:35:51,011 | INFO     | intersect: -2412832858.434875
[2026-02-01 20:36:37] 2026-02-01 20:35:51,012 | INFO     | chi2: 0.003644254451425687
[2026-02-01 20:36:37] 2026-02-01 20:35:51,025 | INFO     | current memory leak: 1.36 B/s (using 521 data points, chi2=0.00)
[2026-02-01 20:36:37] 2026-02-01 20:35:51,026 | INFO     | could have reported an average CPU frequency of 3299 MHz (22 samples)
[2026-02-01 20:36:37] 2026-02-01 20:35:51,026 | INFO     | ..............................
[2026-02-01 20:36:37] 2026-02-01 20:35:51,026 | INFO     | . Timing measurements:
[2026-02-01 20:36:37] 2026-02-01 20:35:51,026 | INFO     | . get job = 0 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,026 | INFO     | . initial setup = 7 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,027 | INFO     | . payload setup = 3 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,027 | INFO     | . stage-in = 0 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,027 | INFO     | . payload execution = 33652 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,027 | INFO     | . stage-out = 6 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,033 | INFO     | . log creation = 0 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,033 | INFO     | ..............................
[2026-02-01 20:36:37] 2026-02-01 20:35:51,478 | INFO     | 
[2026-02-01 20:36:37] 2026-02-01 20:35:51,478 | INFO     | job summary report
[2026-02-01 20:36:37] 2026-02-01 20:35:51,478 | INFO     | --------------------------------------------------
[2026-02-01 20:36:37] 2026-02-01 20:35:51,478 | INFO     | PanDA job id: 6984061967
[2026-02-01 20:36:37] 2026-02-01 20:35:51,478 | INFO     | task id: 48317872
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | errors: (none)
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | pilot state: finished 
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | transexitcode: 0
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | exeerrorcode: 0
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | exeerrordiag: 
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | exitcode: 0
[2026-02-01 20:36:37] 2026-02-01 20:35:51,479 | INFO     | exitmsg: OK
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | cpuconsumptiontime: 65465 s
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | nevents: 400
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | neventsw: 0
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | pid: 130581
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | pgrp: 130581
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | corecount: 12
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | event service: False
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | sizes: {0: 2277797, 1: 2278314, 2: 2278314, 33660: 2318021, 33669: 2327065, 33671: 2327121, 33676: 2327443}
[2026-02-01 20:36:37] 2026-02-01 20:35:51,480 | INFO     | --------------------------------------------------
[2026-02-01 20:36:37] 2026-02-01 20:35:51,481 | INFO     | 
[2026-02-01 20:36:37] 2026-02-01 20:35:51,481 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-02-01 20:36:37] 2026-02-01 20:35:51,518 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,518 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,527 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,527 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,527 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 20:36:37] 2026-02-01 20:35:51,527 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,527 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 20:36:37] 2026-02-01 20:35:51,528 | INFO     | job 6984061967 has completed (purged errors)
[2026-02-01 20:36:37] 2026-02-01 20:35:51,528 | INFO     | overall cleanup function is called
[2026-02-01 20:36:37] 2026-02-01 20:35:52,543 | INFO     | --- collectZombieJob: --- 10, [130581]
[2026-02-01 20:36:37] 2026-02-01 20:35:52,544 | INFO     | zombie collector waiting for pid 130581
[2026-02-01 20:36:37] 2026-02-01 20:35:52,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 20:36:37] 2026-02-01 20:35:52,544 | INFO     | collected zombie processes
[2026-02-01 20:36:37] 2026-02-01 20:35:52,544 | INFO     | will attempt to kill all subprocesses of pid=130581
[2026-02-01 20:36:37] 2026-02-01 20:35:52,799 | INFO     | process IDs to be killed: [130581] (in reverse order)
[2026-02-01 20:36:37] 2026-02-01 20:35:52,890 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 20:36:37] 2026-02-01 20:35:52,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 20:36:37] 2026-02-01 20:35:52,896 | INFO     | did not find any defunct processes belonging to 130581
[2026-02-01 20:36:37] 2026-02-01 20:35:52,900 | INFO     | did not find any defunct processes belonging to 130581
[2026-02-01 20:36:37] 2026-02-01 20:35:52,901 | INFO     | ready for new job
[2026-02-01 20:36:37] 2026-02-01 20:35:52,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 20:36:37] 2026-02-01 20:35:52,907 | INFO     | **************************************
[2026-02-01 20:36:37] 2026-02-01 20:35:52,907 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 20:36:37] 2026-02-01 20:35:52,907 | INFO     | **************************************
[2026-02-01 20:36:37] 2026-02-01 20:35:52,907 | INFO     | 
[2026-02-01 20:36:37] 2026-02-01 20:35:52,908 | INFO     | architecture information:
[2026-02-01 20:36:37] 2026-02-01 20:35:52,911 | INFO     | executing command: cat /etc/os-release
[2026-02-01 20:36:37] 2026-02-01 20:35:52,934 | INFO     | cat /etc/os-release:
[2026-02-01 20:36:37] NAME="CentOS Linux"
[2026-02-01 20:36:37] VERSION="7 (Core)"
[2026-02-01 20:36:37] ID="centos"
[2026-02-01 20:36:37] ID_LIKE="rhel fedora"
[2026-02-01 20:36:37] VERSION_ID="7"
[2026-02-01 20:36:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 20:36:37] ANSI_COLOR="0;31"
[2026-02-01 20:36:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 20:36:37] HOME_URL="https://www.centos.org/"
[2026-02-01 20:36:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 20:36:37] 
[2026-02-01 20:36:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 20:36:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 20:36:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 20:36:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 20:36:37] 
[2026-02-01 20:36:37] 2026-02-01 20:35:52,934 | INFO     | **************************************
[2026-02-01 20:36:37] 2026-02-01 20:35:53,441 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-02-01 20:36:37] 2026-02-01 20:35:53,493 | INFO     | sufficient remaining disk space (254648778752 B)
[2026-02-01 20:36:37] 2026-02-01 20:35:53,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 20:36:37] 2026-02-01 20:35:53,494 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 20:36:37] 2026-02-01 20:35:53,494 | INFO     | update_server=False
[2026-02-01 20:36:37] 2026-02-01 20:35:53,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 20:36:37] 2026-02-01 20:35:53,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 20:36:37] 2026-02-01 20:35:53,724 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 20:36:37] 2026-02-01 20:35:53,724 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 20:36:37] 2026-02-01 20:35:53,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 20:36:37] 2026-02-01 20:35:53,724 | INFO     | will abort loop
[2026-02-01 20:36:37] 2026-02-01 20:35:54,158 | INFO     | all data control threads have been joined
[2026-02-01 20:36:37] 2026-02-01 20:35:54,324 | INFO     | all job control threads have been joined
[2026-02-01 20:36:37] 2026-02-01 20:35:54,502 | INFO     | [job] retrieve thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:54,572 | INFO     | [payload] validate_post thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:54,729 | INFO     | [job] job monitor thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:54,854 | INFO     | all payload control threads have been joined
[2026-02-01 20:36:37] 2026-02-01 20:35:54,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 20:36:37] 2026-02-01 20:35:55,163 | INFO     | [data] control thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,329 | INFO     | [job] control thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,723 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,724 | INFO     | [data] copytool_in thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,725 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,859 | INFO     | [payload] control thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,938 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,939 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,943 | INFO     | [job] validate thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:55,983 | INFO     | [payload] failed_post thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:56,497 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 20:36:37] 2026-02-01 20:35:56,867 | INFO     | [data] copytool_out thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:57,502 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:35:57,502 | INFO     | [job] queue monitor thread has finished
[2026-02-01 20:36:37] 2026-02-01 20:36:23,329 | INFO     | PID=126205 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-01 20:36:37] 2026-02-01 20:36:23,329 | INFO     | .. there are 2 such processes running
[2026-02-01 20:36:37] 2026-02-01 20:36:23,330 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 20:36:37] 2026-02-01 20:36:23,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 20:36:37] 2026-02-01 20:36:23,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 20:36:37] 2026-02-01 20:36:29,606 | INFO     | [monitor] cgroup control has ended
[2026-02-01 20:36:37] 2026-02-01 20:36:31,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132366846654272)>', '<ExcThread(monitor, started 132366345410304)>']
[2026-02-01 20:36:37] 2026-02-01 20:36:31,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 20:36:37] 2026-02-01 20:36:31,378 | INFO     | [monitor] control thread has ended
[2026-02-01 20:36:37] 2026-02-01 20:36:36,176 | INFO     | all workflow threads have been joined
[2026-02-01 20:36:37] 2026-02-01 20:36:36,176 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 20:36:37] 2026-02-01 20:36:36,176 | INFO     | traces error code: 0
[2026-02-01 20:36:37] 2026-02-01 20:36:36,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 20:36:37] 2026-02-01 20:36:36,622 [wrapper] ==== pilot stdout END ====
[2026-02-01 20:36:37] 2026-02-01 20:36:36,629 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 20:36:37] 2026-02-01 20:36:36,637 [wrapper] pilotpid: 126205
[2026-02-01 20:36:37] 2026-02-01 20:36:36,644 [wrapper] Pilot exit status: 0
[2026-02-01 20:36:37] 2026-02-01 20:36:36,680 [wrapper] pandaids: 6984061967
[2026-02-01 20:36:37] 2026-02-01 20:36:36,745 [wrapper] cleanup supervisor_pilot  152312 126206
[2026-02-01 20:36:37] 2026-02-01 20:36:36,749 [wrapper] Test setup, not cleaning
[2026-02-01 20:36:37] 2026-02-01 20:36:36,757 [wrapper] apfmon messages muted
[2026-02-01 20:36:37] 2026-02-01 20:36:36,763 [wrapper] ==== wrapper stdout END ====
[2026-02-01 20:36:37] 2026-02-01 20:36:36,769 [wrapper] ==== wrapper stderr END ====
[2026-02-01 20:36:37]  *** Error codes and diagnostics ***
[2026-02-01 20:36:37]     "exeErrorCode": 0,
[2026-02-01 20:36:37]     "exeErrorDiag": "",
[2026-02-01 20:36:37]     "pilotErrorCode": 0,
[2026-02-01 20:36:37]     "pilotErrorDiag": "",
[2026-02-01 20:36:37]  *** Listing of results directory ***
[2026-02-01 20:36:37] total 668172
[2026-02-01 20:36:37] -rw-r--r-- 1 boinc boinc    584422 Jan 26 07:37 pilot3.tar.gz
[2026-02-01 20:36:37] -rw-r--r-- 1 boinc boinc      5111 Jan 26 07:38 queuedata.json
[2026-02-01 20:36:37] -rwx------ 1 boinc boinc     36322 Jan 26 07:38 runpilot2-wrapper.sh
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc       100 Feb  1 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 20:36:37] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 11:13 run_atlas
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc       105 Feb  1 11:13 job.xml
[2026-02-01 20:36:37] -rw-r--r-- 2 boinc boinc 489781556 Feb  1 11:14 EVNT.48317869._000060.pool.root.1
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc      9275 Feb  1 11:14 init_data.xml
[2026-02-01 20:36:37] -rw-r--r-- 2 boinc boinc    597751 Feb  1 11:14 input.tar.gz
[2026-02-01 20:36:37] drwxrwx--x 2 boinc boinc      4096 Feb  1 11:14 shared
[2026-02-01 20:36:37] -rw-r--r-- 2 boinc boinc     15845 Feb  1 11:14 start_atlas.sh
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc         0 Feb  1 11:14 boinc_lockfile
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc      2514 Feb  1 11:14 pandaJob.out
[2026-02-01 20:36:37] -rw------- 1 boinc boinc   1010520 Feb  1 11:14 agis_schedconf.cvmfs.json
[2026-02-01 20:36:37] -rw------- 1 boinc boinc       414 Feb  1 11:14 workernode_map.json
[2026-02-01 20:36:37] drwx------ 5 boinc boinc      4096 Feb  1 11:14 pilot3
[2026-02-01 20:36:37] -rw------- 1 boinc boinc 179536683 Feb  1 20:34 HITS.48317872._002982.pool.root.1
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc       531 Feb  1 20:34 boinc_task_state.xml
[2026-02-01 20:36:37] -rw------- 1 boinc boinc      1021 Feb  1 20:35 memory_monitor_summary.json
[2026-02-01 20:36:37] -rw------- 1 boinc boinc   1511668 Feb  1 20:35 agis_ddmendpoints.agis.ALL.json
[2026-02-01 20:36:37] -rw------- 1 boinc boinc    786673 Feb  1 20:35 log.48317872._002982.job.log.tgz.1
[2026-02-01 20:36:37] -rw------- 1 boinc boinc      6288 Feb  1 20:35 heartbeat.json
[2026-02-01 20:36:37] -rw------- 1 boinc boinc        95 Feb  1 20:36 pilot_heartbeat.json
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc      8192 Feb  1 20:36 boinc_mmap_file
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc        28 Feb  1 20:36 wrapper_checkpoint.txt
[2026-02-01 20:36:37] -rw------- 1 boinc boinc      5028 Feb  1 20:36 pilotlog.txt
[2026-02-01 20:36:37] -rw------- 1 boinc boinc   4685475 Feb  1 20:36 log.48317872._002982.job.log.1
[2026-02-01 20:36:37] -rw------- 1 boinc boinc       357 Feb  1 20:36 output.list
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc       620 Feb  1 20:36 runtime_log
[2026-02-01 20:36:37] -rw------- 1 boinc boinc   5488640 Feb  1 20:36 result.tar.gz
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc      9152 Feb  1 20:36 runtime_log.err
[2026-02-01 20:36:37] -rw------- 1 boinc boinc       653 Feb  1 20:36 DGjNDmeMW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZI9KDm1dZi2n.diag
[2026-02-01 20:36:37] -rw-rw-r-- 1 boinc boinc     20918 Feb  1 20:36 stderr.txt
[2026-02-01 20:36:37] HITS file was successfully produced:
[2026-02-01 20:36:37] -rw------- 1 boinc boinc 179536683 Feb  1 20:34 shared/HITS.pool.root.1
[2026-02-01 20:36:37]  *** Contents of shared directory: ***
[2026-02-01 20:36:37] total 659604
[2026-02-01 20:36:37] -rw-r--r-- 2 boinc boinc 489781556 Feb  1 11:14 ATLAS.root_0
[2026-02-01 20:36:37] -rw-r--r-- 2 boinc boinc    597751 Feb  1 11:14 input.tar.gz
[2026-02-01 20:36:37] -rw-r--r-- 2 boinc boinc     15845 Feb  1 11:14 start_atlas.sh
[2026-02-01 20:36:37] -rw------- 1 boinc boinc 179536683 Feb  1 20:34 HITS.pool.root.1
[2026-02-01 20:36:37] -rw------- 1 boinc boinc   5488640 Feb  1 20:36 result.tar.gz
20:36:39 (122197): run_atlas exited; CPU time 65808.373802
20:36:39 (122197): called boinc_finish(0)

</stderr_txt>
]]>

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