Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:06:51 (3871837): wrapper (7.7.26015): starting
12:06:51 (3871837): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 12:06:51] Arguments: --nthreads 4
[2026-01-27 12:06:51] Threads: 4
[2026-01-27 12:06:51] Checking for CVMFS
[2026-01-27 12:06:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:06:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:06:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:06:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:06:52] 2.13.1.0 2934336 1385 76420 155581 0 188 6876250 10240001 1822 130560 0 2215717 99.994 52984 274 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-01-27 12:06:52] CVMFS is ok
[2026-01-27 12:06:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:06:52] Checking for apptainer binary...
[2026-01-27 12:06:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:06:52] Running /usr/bin/apptainer --version
[2026-01-27 12:06:52] apptainer version 1.4.5
[2026-01-27 12:06:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:06:52] julianvlneu
[2026-01-27 12:06:52] apptainer works
[2026-01-27 12:06:52] Set ATHENA_PROC_NUMBER=4
[2026-01-27 12:06:52] Set ATHENA_CORE_NUMBER=4
[2026-01-27 12:06:52] Starting ATLAS job with PandaID=6984061769
[2026-01-27 12:06:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:09:41]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:09:41]  lfn=log.48317872._002784.job.log.tgz.1
[2026-01-27 13:09:41]  mtime=0
[2026-01-27 13:09:41]  protocol_id=None
[2026-01-27 13:09:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 13:09:41]  replicas=None
[2026-01-27 13:09:41]  scope=mc23_13p6TeV
[2026-01-27 13:09:41]  status=None
[2026-01-27 13:09:41]  status_code=0
[2026-01-27 13:09:41]  storage_token=
[2026-01-27 13:09:41]  surl=/var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6984061769/log.48317872._002784.job.log.tgz.1
[2026-01-27 13:09:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/8f/log.48317872._002784.job.log.tgz.1
[2026-01-27 13:09:41]  workdir=None
[2026-01-27 13:09:41] ]
[2026-01-27 13:09:41] 2026-01-27 12:09:03,736 | INFO     | transferring file log.48317872._002784.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6984061769/log.48317872._002784.job.log.tgz.1 to /var/li
[2026-01-27 13:09:41] 2026-01-27 12:09:03,736 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6984061769/log.48317872._002784.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-01-27 13:09:41] 2026-01-27 12:09:03,770 | INFO     | adding to output.list: log.48317872._002784.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/8f/log.48317872._002784.job.log.tg
[2026-01-27 13:09:41] 2026-01-27 12:09:03,771 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 13:09:41] 2026-01-27 12:09:03,771 | INFO     | summary of transferred files:
[2026-01-27 13:09:41] 2026-01-27 12:09:03,771 | INFO     |  -- lfn=log.48317872._002784.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 13:09:41] 2026-01-27 12:09:03,771 | INFO     | stage-out finished correctly
[2026-01-27 13:09:41] 2026-01-27 12:09:04,316 | INFO     | time since job start (3708s) is within the limit (349056.0s)
[2026-01-27 13:09:41] 2026-01-27 12:09:06,284 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 13:09:41] 2026-01-27 12:09:06,322 | INFO     | time since job start (3710s) is within the limit (349056.0s)
[2026-01-27 13:09:41] 2026-01-27 12:09:08,328 | INFO     | time since job start (3712s) is within the limit (349056.0s)
[2026-01-27 13:09:41] 2026-01-27 12:09:08,910 | WARNING  | process 3880407 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 13:09:41] 2026-01-27 12:09:08,910 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6984061769/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,024 | INFO     | number of running child processes to parent process 3880407: 1
[2026-01-27 13:09:41] 2026-01-27 12:09:09,024 | INFO     | maximum number of monitored processes: 6
[2026-01-27 13:09:41] 2026-01-27 12:09:09,115 | INFO     | job 6984061769 has state=finished
[2026-01-27 13:09:41] 2026-01-27 12:09:09,116 | INFO     | preparing for final server update for job 6984061769 in state='finished'
[2026-01-27 13:09:41] 2026-01-27 12:09:09,116 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6984061769/jobReport.json
[2026-01-27 13:09:41] 2026-01-27 12:09:09,118 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/4/workernode_map.json
[2026-01-27 13:09:41] 2026-01-27 12:09:09,118 | INFO     | this job has now completed (state=finished)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,118 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,118 | INFO     | log transfer has been attempted: DONE
[2026-01-27 13:09:41] 2026-01-27 12:09:09,118 | INFO     | job 6984061769 has finished - writing final server update
[2026-01-27 13:09:41] 2026-01-27 12:09:09,118 | INFO     | total number of processed events: 400 (read)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,120 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6984061769/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,120 | INFO     | extracted standard info from prmon json
[2026-01-27 13:09:41] 2026-01-27 12:09:09,120 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 13:09:41] 2026-01-27 12:09:09,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 13:09:41] 2026-01-27 12:09:09,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 13:09:41] 2026-01-27 12:09:09,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | fitting pss+swap vs Time
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | sum of square deviations: 48810217.5
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | sum of deviations: -2005380306.9999998
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | mean x: 1769513984.5
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | mean y: 2364879.074074074
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | intersect: 72703300855.79663
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | chi2: 0.08134443157221413
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | current memory leak: -41.09 B/s (using 54 data points, chi2=0.08)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | could have reported an average CPU frequency of 4399 MHz (6 samples)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | ..............................
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | . Timing measurements:
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | . get job = 0 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | . initial setup = 7 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | . payload setup = 8 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,121 | INFO     | . stage-in = 0 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,122 | INFO     | . payload execution = 3682 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,122 | INFO     | . stage-out = 0 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,122 | INFO     | . log creation = 0 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,122 | INFO     | ..............................
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | 
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | job summary report
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | --------------------------------------------------
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | PanDA job id: 6984061769
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | task id: 48317872
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | errors: (none)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | pilot state: finished 
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | transexitcode: 0
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | exeerrorcode: 0
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | exeerrordiag: 
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | exitcode: 0
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | exitmsg: OK
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | cpuconsumptiontime: 13673 s
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | nevents: 400
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | neventsw: 0
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | pid: 3880407
[2026-01-27 13:09:41] 2026-01-27 12:09:09,145 | INFO     | pgrp: 3880407
[2026-01-27 13:09:41] 2026-01-27 12:09:09,146 | INFO     | corecount: 4
[2026-01-27 13:09:41] 2026-01-27 12:09:09,146 | INFO     | event service: False
[2026-01-27 13:09:41] 2026-01-27 12:09:09,146 | INFO     | sizes: {0: 2284246, 10: 2284246, 3695: 2310036, 3697: 2319062, 3699: 2319118, 3702: 2319312}
[2026-01-27 13:09:41] 2026-01-27 12:09:09,146 | INFO     | --------------------------------------------------
[2026-01-27 13:09:41] 2026-01-27 12:09:09,146 | INFO     | 
[2026-01-27 13:09:41] 2026-01-27 12:09:09,146 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/4
[2026-01-27 13:09:41] 2026-01-27 12:09:09,173 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | job 6984061769 has completed (purged errors)
[2026-01-27 13:09:41] 2026-01-27 12:09:09,175 | INFO     | overall cleanup function is called
[2026-01-27 13:09:41] 2026-01-27 12:09:09,461 | INFO     | PID=3875865 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 13:09:41] 2026-01-27 12:09:09,461 | INFO     | .. there are 2 such processes running
[2026-01-27 13:09:41] 2026-01-27 12:09:10,182 | INFO     | --- collectZombieJob: --- 10, [3880407]
[2026-01-27 13:09:41] 2026-01-27 12:09:10,182 | INFO     | zombie collector waiting for pid 3880407
[2026-01-27 13:09:41] 2026-01-27 12:09:10,182 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:09:41] 2026-01-27 12:09:10,182 | INFO     | collected zombie processes
[2026-01-27 13:09:41] 2026-01-27 12:09:10,182 | INFO     | will attempt to kill all subprocesses of pid=3880407
[2026-01-27 13:09:41] 2026-01-27 12:09:10,293 | INFO     | process IDs to be killed: [3880407] (in reverse order)
[2026-01-27 13:09:41] 2026-01-27 12:09:10,360 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:09:41] 2026-01-27 12:09:10,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:09:41] 2026-01-27 12:09:10,364 | INFO     | did not find any defunct processes belonging to 3880407
[2026-01-27 13:09:41] 2026-01-27 12:09:10,367 | INFO     | did not find any defunct processes belonging to 3880407
[2026-01-27 13:09:41] 2026-01-27 12:09:10,367 | INFO     | ready for new job
[2026-01-27 13:09:41] 2026-01-27 12:09:10,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:09:41] 2026-01-27 12:09:10,369 | INFO     | **************************************
[2026-01-27 13:09:41] 2026-01-27 12:09:10,370 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:09:41] 2026-01-27 12:09:10,370 | INFO     | **************************************
[2026-01-27 13:09:41] 2026-01-27 12:09:10,370 | INFO     | 
[2026-01-27 13:09:41] 2026-01-27 12:09:10,370 | INFO     | pilot is running in a VM
[2026-01-27 13:09:41] 2026-01-27 12:09:10,370 | INFO     | architecture information:
[2026-01-27 13:09:41] 2026-01-27 12:09:10,371 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:09:41] 2026-01-27 12:09:10,386 | INFO     | cat /etc/os-release:
[2026-01-27 13:09:41] NAME="CentOS Linux"
[2026-01-27 13:09:41] VERSION="7 (Core)"
[2026-01-27 13:09:41] ID="centos"
[2026-01-27 13:09:41] ID_LIKE="rhel fedora"
[2026-01-27 13:09:41] VERSION_ID="7"
[2026-01-27 13:09:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:09:41] ANSI_COLOR="0;31"
[2026-01-27 13:09:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:09:41] HOME_URL="https://www.centos.org/"
[2026-01-27 13:09:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:09:41] 
[2026-01-27 13:09:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:09:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:09:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:09:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:09:41] 
[2026-01-27 13:09:41] 2026-01-27 12:09:10,387 | INFO     | **************************************
[2026-01-27 13:09:41] 2026-01-27 12:09:10,890 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/4
[2026-01-27 13:09:41] 2026-01-27 12:09:10,913 | INFO     | sufficient remaining disk space (150205366272 B)
[2026-01-27 13:09:41] 2026-01-27 12:09:10,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:09:41] 2026-01-27 12:09:10,914 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:09:41] 2026-01-27 12:09:10,914 | INFO     | update_server=False
[2026-01-27 13:09:41] 2026-01-27 12:09:10,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:09:41] 2026-01-27 12:09:10,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:09:41] 2026-01-27 12:09:10,914 | INFO     | aborting loop
[2026-01-27 13:09:41] 2026-01-27 12:09:10,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:09:41] 2026-01-27 12:09:11,291 | INFO     | all payload control threads have been joined
[2026-01-27 13:09:41] 2026-01-27 12:09:11,505 | INFO     | all job control threads have been joined
[2026-01-27 13:09:41] 2026-01-27 12:09:11,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:09:41] 2026-01-27 12:09:11,919 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:11,920 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:11,920 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:11,998 | INFO     | all data control threads have been joined
[2026-01-27 13:09:41] 2026-01-27 12:09:12,128 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,297 | INFO     | [payload] control thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:09:41] 2026-01-27 12:09:12,499 | INFO     | [job] validate thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,510 | INFO     | [job] control thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,626 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,684 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,712 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,772 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:12,841 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:13,003 | INFO     | [data] control thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:13,097 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:13,828 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:16,328 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:09:41] 2026-01-27 12:09:20,995 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:09:41] 2026-01-27 12:09:22,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125484870760256)>', '<ExcThread(monitor, started 125484071364352)>']
[2026-01-27 13:09:41] 2026-01-27 12:09:27,862 | INFO     | all workflow threads have been joined
[2026-01-27 13:09:41] 2026-01-27 12:09:27,863 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:09:41] 2026-01-27 12:09:27,863 | INFO     | traces error code: 0
[2026-01-27 13:09:41] 2026-01-27 12:09:27,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | INFO     | PID=3875865 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | INFO     | .. there are 2 such processes running
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:09:41] 2026-01-27 12:09:41,664 | INFO     | [monitor] control thread has ended
[2026-01-27 13:09:41] 2026-01-27 12:09:41,747 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:09:41] 2026-01-27 12:09:41,752 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:09:41] 2026-01-27 12:09:41,757 [wrapper] pilotpid: 3875865
[2026-01-27 13:09:41] 2026-01-27 12:09:41,762 [wrapper] Pilot exit status: 0
[2026-01-27 13:09:41] 2026-01-27 12:09:41,782 [wrapper] pandaids: 6984061769
[2026-01-27 13:09:41] 2026-01-27 12:09:41,836 [wrapper] cleanup supervisor_pilot 3905935 3875866
[2026-01-27 13:09:41] 2026-01-27 12:09:41,841 [wrapper] Test setup, not cleaning
[2026-01-27 13:09:41] 2026-01-27 12:09:41,847 [wrapper] apfmon messages muted
[2026-01-27 13:09:41] 2026-01-27 12:09:41,853 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:09:41] 2026-01-27 12:09:41,862 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:09:41]  *** Error codes and diagnostics ***
[2026-01-27 13:09:41]     "exeErrorCode": 0,
[2026-01-27 13:09:41]     "exeErrorDiag": "",
[2026-01-27 13:09:41]     "pilotErrorCode": 0,
[2026-01-27 13:09:41]     "pilotErrorDiag": "",
[2026-01-27 13:09:41]  *** Listing of results directory ***
[2026-01-27 13:09:41] insgesamt 673212
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc    584422 Jan 26 08:37 pilot3.tar.gz
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc      5111 Jan 26 08:38 queuedata.json
[2026-01-27 13:09:41] -rwx------ 1 yeti boinc     36322 Jan 26 08:38 runpilot2-wrapper.sh
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc       100 Jan 27 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:09:41] -rwxr-xr-x 1 yeti boinc      7986 Jan 27 12:06 run_atlas
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc       105 Jan 27 12:06 job.xml
[2026-01-27 13:09:41] -rw-r--r-- 2 yeti boinc     15845 Jan 27 12:06 start_atlas.sh
[2026-01-27 13:09:41] drwxrwx--x 2 yeti boinc      4096 Jan 27 12:06 shared
[2026-01-27 13:09:41] -rw-r--r-- 2 yeti boinc    597754 Jan 27 12:06 input.tar.gz
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc      6731 Jan 27 12:06 init_data.xml
[2026-01-27 13:09:41] -rw-r--r-- 2 yeti boinc 494740458 Jan 27 12:06 EVNT.48317869._000056.pool.root.1
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc         0 Jan 27 12:06 boinc_setup_complete
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc         0 Jan 27 12:06 boinc_lockfile
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc      2514 Jan 27 12:06 pandaJob.out
[2026-01-27 13:09:41] -rw------- 1 yeti boinc        52 Jan 27 12:06 setup.sh.local
[2026-01-27 13:09:41] -rw------- 1 yeti boinc   1002845 Jan 27 12:07 agis_schedconf.cvmfs.json
[2026-01-27 13:09:41] -rw------- 1 yeti boinc   1516246 Jan 27 12:07 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:09:41] -rw------- 1 yeti boinc       425 Jan 27 12:07 workernode_map.json
[2026-01-27 13:09:41] drwx------ 5 yeti boinc      4096 Jan 27 12:07 pilot3
[2026-01-27 13:09:41] -rw------- 1 yeti boinc 189025683 Jan 27 13:08 HITS.48317872._002784.pool.root.1
[2026-01-27 13:09:41] -rw------- 1 yeti boinc        95 Jan 27 13:08 pilot_heartbeat.json
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc       530 Jan 27 13:08 boinc_task_state.xml
[2026-01-27 13:09:41] -rw------- 1 yeti boinc      1015 Jan 27 13:08 memory_monitor_summary.json
[2026-01-27 13:09:41] -rw------- 1 yeti boinc    259434 Jan 27 13:09 log.48317872._002784.job.log.tgz.1
[2026-01-27 13:09:41] -rw------- 1 yeti boinc      6279 Jan 27 13:09 heartbeat.json
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc      8192 Jan 27 13:09 boinc_mmap_file
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc        27 Jan 27 13:09 wrapper_checkpoint.txt
[2026-01-27 13:09:41] -rw------- 1 yeti boinc       822 Jan 27 13:09 pilotlog.txt
[2026-01-27 13:09:41] -rw------- 1 yeti boinc    571220 Jan 27 13:09 log.48317872._002784.job.log.1
[2026-01-27 13:09:41] -rw------- 1 yeti boinc       357 Jan 27 13:09 output.list
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc       620 Jan 27 13:09 runtime_log
[2026-01-27 13:09:41] -rw------- 1 yeti boinc    849920 Jan 27 13:09 result.tar.gz
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc      9556 Jan 27 13:09 runtime_log.err
[2026-01-27 13:09:41] -rw------- 1 yeti boinc       640 Jan 27 13:09 o82MDmeMW48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFl2KDmrjpPHm.diag
[2026-01-27 13:09:41] -rw-r--r-- 1 yeti boinc     21499 Jan 27 13:09 stderr.txt
[2026-01-27 13:09:42] HITS file was successfully produced:
[2026-01-27 13:09:42] -rw------- 1 yeti boinc 189025683 Jan 27 13:08 shared/HITS.pool.root.1
[2026-01-27 13:09:42]  *** Contents of shared directory: ***
[2026-01-27 13:09:42] insgesamt 669184
[2026-01-27 13:09:42] -rw-r--r-- 2 yeti boinc     15845 Jan 27 12:06 start_atlas.sh
[2026-01-27 13:09:42] -rw-r--r-- 2 yeti boinc    597754 Jan 27 12:06 input.tar.gz
[2026-01-27 13:09:42] -rw-r--r-- 2 yeti boinc 494740458 Jan 27 12:06 ATLAS.root_0
[2026-01-27 13:09:42] -rw------- 1 yeti boinc 189025683 Jan 27 13:08 HITS.pool.root.1
[2026-01-27 13:09:42] -rw------- 1 yeti boinc    849920 Jan 27 13:09 result.tar.gz
13:09:43 (3871837): run_atlas exited; CPU time 13775.727344
13:09:43 (3871837): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN