Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:28:23 (5494): wrapper (7.7.26015): starting
22:28:23 (5494): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 22:28:23] Arguments: --nthreads 12
[2026-01-26 22:28:23] Threads: 12
[2026-01-26 22:28:23] Checking for CVMFS
[2026-01-26 22:28:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 22:28:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 22:28:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 22:28:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 22:28:24] 2.11.2.0 10903 94886 95848 155571 0 52 14088834 20275201 1 130560 0 34447902 99.845 7398098 33574 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 22:28:24] CVMFS is ok
[2026-01-26 22:28:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 22:28:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 22:28:24] Further information can be found at the LHC@home message board.
[2026-01-26 22:28:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 22:28:24] Checking for apptainer binary...
[2026-01-26 22:28:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 22:28:24] Running /usr/bin/apptainer --version
[2026-01-26 22:28:24] apptainer version 1.3.2-1.el7
[2026-01-26 22:28:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 22:28:25] c-205-22.aglt2.org
[2026-01-26 22:28:25] apptainer works
[2026-01-26 22:28:25] Set ATHENA_PROC_NUMBER=12
[2026-01-26 22:28:25] Set ATHENA_CORE_NUMBER=12
[2026-01-26 22:28:25] Starting ATLAS job with PandaID=6984042562
[2026-01-26 22:28:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 23:41:20]  *** The last 200 lines of the pilot log: ***
[2026-01-26 23:41:20]  filetype=log
[2026-01-26 23:41:20]  guid=bb2492e0-e39c-4b65-a055-1ffb17f8ffbf
[2026-01-26 23:41:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 23:41:20]  is_altstaged=None
[2026-01-26 23:41:20]  is_tar=False
[2026-01-26 23:41:20]  lfn=log.47929392._005263.job.log.tgz.1
[2026-01-26 23:41:20]  mtime=0
[2026-01-26 23:41:20]  protocol_id=None
[2026-01-26 23:41:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 23:41:20]  replicas=None
[2026-01-26 23:41:20]  scope=mc23_13p6TeV
[2026-01-26 23:41:20]  status=None
[2026-01-26 23:41:20]  status_code=0
[2026-01-26 23:41:20]  storage_token=
[2026-01-26 23:41:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6984042562/log.47929392._005263.job.log.tgz.1
[2026-01-26 23:41:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/91/log.47929392._005263.job.log.tgz.1
[2026-01-26 23:41:20]  workdir=None
[2026-01-26 23:41:20] ]
[2026-01-26 23:41:20] 2026-01-27 04:40:47,936 | INFO     | transferring file log.47929392._005263.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6984042562/log.47929392._005263.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 23:41:20] 2026-01-27 04:40:47,937 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6984042562/log.47929392._005263.job.log.tgz.1 /tmp/boinchome/slots/0/log.47929392._005263.job
[2026-01-26 23:41:20] 2026-01-27 04:40:47,958 | INFO     | adding to output.list: log.47929392._005263.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/91/log.47929392._005263.job.log.tg
[2026-01-26 23:41:20] 2026-01-27 04:40:47,959 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 23:41:20] 2026-01-27 04:40:47,959 | INFO     | summary of transferred files:
[2026-01-26 23:41:20] 2026-01-27 04:40:47,959 | INFO     |  -- lfn=log.47929392._005263.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 23:41:20] 2026-01-27 04:40:47,960 | INFO     | stage-out finished correctly
[2026-01-26 23:41:20] 2026-01-27 04:40:48,461 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 23:41:20] 2026-01-27 04:40:48,539 | INFO     | job 6984042562 has state=finished
[2026-01-26 23:41:20] 2026-01-27 04:40:48,539 | INFO     | preparing for final server update for job 6984042562 in state='finished'
[2026-01-26 23:41:20] 2026-01-27 04:40:48,539 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6984042562/jobReport.json
[2026-01-26 23:41:20] 2026-01-27 04:40:48,543 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-26 23:41:20] 2026-01-27 04:40:48,543 | INFO     | this job has now completed (state=finished)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,543 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,543 | INFO     | log transfer has been attempted: DONE
[2026-01-26 23:41:20] 2026-01-27 04:40:48,544 | INFO     | job 6984042562 has finished - writing final server update
[2026-01-26 23:41:20] 2026-01-27 04:40:48,544 | INFO     | total number of processed events: 400 (read)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,546 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6984042562/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,547 | INFO     | extracted standard info from prmon json
[2026-01-26 23:41:20] 2026-01-27 04:40:48,547 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 23:41:20] 2026-01-27 04:40:48,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 23:41:20] 2026-01-27 04:40:48,547 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 23:41:20] 2026-01-27 04:40:48,547 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 23:41:20] 2026-01-27 04:40:48,549 | INFO     | fitting pss+swap vs Time
[2026-01-26 23:41:20] 2026-01-27 04:40:48,549 | INFO     | sum of square deviations: 81266640.0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,549 | INFO     | sum of deviations: -7936144774.0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,549 | INFO     | mean x: 1769486775.5
[2026-01-26 23:41:20] 2026-01-27 04:40:48,549 | INFO     | mean y: 2873137.3125
[2026-01-26 23:41:20] 2026-01-27 04:40:48,550 | INFO     | intersect: 172803215640.04715
[2026-01-26 23:41:20] 2026-01-27 04:40:48,550 | INFO     | chi2: 0.059345421259417976
[2026-01-26 23:41:20] 2026-01-27 04:40:48,550 | INFO     | current memory leak: -97.66 B/s (using 64 data points, chi2=0.06)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,550 | INFO     | could have reported an average CPU frequency of 1673 MHz (6 samples)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,550 | INFO     | ..............................
[2026-01-26 23:41:20] 2026-01-27 04:40:48,550 | INFO     | . Timing measurements:
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . get job = 0 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . initial setup = 7 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . payload setup = 6 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . stage-in = 0 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . payload execution = 4299 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . stage-out = 0 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | . log creation = 0 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,551 | INFO     | ..............................
[2026-01-26 23:41:20] 2026-01-27 04:40:48,974 | INFO     | 
[2026-01-26 23:41:20] 2026-01-27 04:40:48,974 | INFO     | job summary report
[2026-01-26 23:41:20] 2026-01-27 04:40:48,975 | INFO     | --------------------------------------------------
[2026-01-26 23:41:20] 2026-01-27 04:40:48,975 | INFO     | PanDA job id: 6984042562
[2026-01-26 23:41:20] 2026-01-27 04:40:48,975 | INFO     | task id: 47929392
[2026-01-26 23:41:20] 2026-01-27 04:40:48,975 | INFO     | errors: (none)
[2026-01-26 23:41:20] 2026-01-27 04:40:48,975 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 23:41:20] 2026-01-27 04:40:48,975 | INFO     | pilot state: finished 
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | transexitcode: 0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | exeerrorcode: 0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | exeerrordiag: 
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | exitcode: 0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | exitmsg: OK
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | cpuconsumptiontime: 47284 s
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | nevents: 400
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | neventsw: 0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | pid: 13718
[2026-01-26 23:41:20] 2026-01-27 04:40:48,976 | INFO     | pgrp: 13718
[2026-01-26 23:41:20] 2026-01-27 04:40:48,977 | INFO     | corecount: 12
[2026-01-26 23:41:20] 2026-01-27 04:40:48,977 | INFO     | event service: False
[2026-01-26 23:41:20] 2026-01-27 04:40:48,977 | INFO     | sizes: {0: 2284074, 1: 2284308, 11: 2284308, 4310: 2310327, 4311: 2319325, 4312: 2319703}
[2026-01-26 23:41:20] 2026-01-27 04:40:48,977 | INFO     | --------------------------------------------------
[2026-01-26 23:41:20] 2026-01-27 04:40:48,977 | INFO     | 
[2026-01-26 23:41:20] 2026-01-27 04:40:48,977 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-26 23:41:20] 2026-01-27 04:40:48,998 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:48,999 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:48,999 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:48,999 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:48,999 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:48,999 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:48,999 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,000 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,000 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,001 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,001 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,001 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,001 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 23:41:20] 2026-01-27 04:40:49,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,002 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 23:41:20] 2026-01-27 04:40:49,002 | INFO     | job 6984042562 has completed (purged errors)
[2026-01-26 23:41:20] 2026-01-27 04:40:49,002 | INFO     | overall cleanup function is called
[2026-01-26 23:41:20] 2026-01-27 04:40:49,344 | WARNING  | process 13718 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 23:41:20] 2026-01-27 04:40:49,418 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 23:41:20] 2026-01-27 04:40:49,505 | INFO     | number of running child processes to parent process 13718: 1
[2026-01-26 23:41:20] 2026-01-27 04:40:49,505 | INFO     | maximum number of monitored processes: 6
[2026-01-26 23:41:20] 2026-01-27 04:40:49,505 | INFO     | aborting job monitoring since job object (job id=6984042562) has expired
[2026-01-26 23:41:20] 2026-01-27 04:40:50,008 | INFO     | --- collectZombieJob: --- 10, [13718]
[2026-01-26 23:41:20] 2026-01-27 04:40:50,008 | INFO     | zombie collector waiting for pid 13718
[2026-01-26 23:41:20] 2026-01-27 04:40:50,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 23:41:20] 2026-01-27 04:40:50,008 | INFO     | collected zombie processes
[2026-01-26 23:41:20] 2026-01-27 04:40:50,008 | INFO     | will attempt to kill all subprocesses of pid=13718
[2026-01-26 23:41:20] 2026-01-27 04:40:50,099 | INFO     | process IDs to be killed: [13718] (in reverse order)
[2026-01-26 23:41:20] 2026-01-27 04:40:50,151 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 23:41:20] 2026-01-27 04:40:50,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 23:41:20] 2026-01-27 04:40:50,155 | INFO     | did not find any defunct processes belonging to 13718
[2026-01-26 23:41:20] 2026-01-27 04:40:50,158 | INFO     | did not find any defunct processes belonging to 13718
[2026-01-26 23:41:20] 2026-01-27 04:40:50,158 | INFO     | ready for new job
[2026-01-26 23:41:20] 2026-01-27 04:40:50,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 23:41:20] 2026-01-27 04:40:50,159 | INFO     | **************************************
[2026-01-26 23:41:20] 2026-01-27 04:40:50,159 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 23:41:20] 2026-01-27 04:40:50,160 | INFO     | **************************************
[2026-01-26 23:41:20] 2026-01-27 04:40:50,160 | INFO     | 
[2026-01-26 23:41:20] 2026-01-27 04:40:50,160 | INFO     | architecture information:
[2026-01-26 23:41:20] 2026-01-27 04:40:50,161 | INFO     | executing command: cat /etc/os-release
[2026-01-26 23:41:20] 2026-01-27 04:40:50,174 | INFO     | cat /etc/os-release:
[2026-01-26 23:41:20] NAME="CentOS Linux"
[2026-01-26 23:41:20] VERSION="7 (Core)"
[2026-01-26 23:41:20] ID="centos"
[2026-01-26 23:41:20] ID_LIKE="rhel fedora"
[2026-01-26 23:41:20] VERSION_ID="7"
[2026-01-26 23:41:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 23:41:20] ANSI_COLOR="0;31"
[2026-01-26 23:41:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 23:41:20] HOME_URL="https://www.centos.org/"
[2026-01-26 23:41:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 23:41:20] 
[2026-01-26 23:41:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 23:41:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 23:41:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 23:41:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 23:41:20] 
[2026-01-26 23:41:20] 2026-01-27 04:40:50,174 | INFO     | **************************************
[2026-01-26 23:41:20] 2026-01-27 04:40:50,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-26 23:41:20] 2026-01-27 04:40:50,693 | INFO     | sufficient remaining disk space (28607250432 B)
[2026-01-26 23:41:20] 2026-01-27 04:40:50,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 23:41:20] 2026-01-27 04:40:50,694 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 23:41:20] 2026-01-27 04:40:50,694 | INFO     | update_server=False
[2026-01-26 23:41:20] 2026-01-27 04:40:50,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 23:41:20] 2026-01-27 04:40:50,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 23:41:20] 2026-01-27 04:40:50,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 23:41:20] 2026-01-27 04:40:50,695 | INFO     | aborting loop
[2026-01-26 23:41:20] 2026-01-27 04:40:50,852 | INFO     | all payload control threads have been joined
[2026-01-26 23:41:20] 2026-01-27 04:40:51,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 23:41:20] 2026-01-27 04:40:51,195 | INFO     | all data control threads have been joined
[2026-01-26 23:41:20] 2026-01-27 04:40:51,699 | INFO     | [job] retrieve thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:51,701 | INFO     | [job] job monitor thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:51,711 | INFO     | all job control threads have been joined
[2026-01-26 23:41:20] 2026-01-27 04:40:51,835 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:51,857 | INFO     | [payload] control thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:51,947 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:52,083 | INFO     | [payload] failed_post thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:52,106 | INFO     | [monitor] cgroup control has ended
[2026-01-26 23:41:20] 2026-01-27 04:40:52,201 | INFO     | [data] control thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:52,482 | INFO     | [data] copytool_in thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:52,652 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:52,716 | INFO     | [job] control thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:53,032 | INFO     | [payload] validate_post thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:53,051 | INFO     | [data] copytool_out thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:53,177 | INFO     | [job] validate thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:53,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 23:41:20] 2026-01-27 04:40:54,643 | INFO     | [job] queue monitor thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:40:54,701 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:41:01,064 | INFO     | job.realtimelogging is not enabled
[2026-01-26 23:41:20] 2026-01-27 04:41:02,070 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 23:41:20] 2026-01-27 04:41:02,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649461552960)>', '<ExcThread(monitor, started 140648879474432)>']
[2026-01-26 23:41:20] 2026-01-27 04:41:07,425 | INFO     | all workflow threads have been joined
[2026-01-26 23:41:20] 2026-01-27 04:41:07,425 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 23:41:20] 2026-01-27 04:41:07,425 | INFO     | traces error code: 0
[2026-01-26 23:41:20] 2026-01-27 04:41:07,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 23:41:20] 2026-01-27 04:41:20,409 | INFO     | PID=9170 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-26 23:41:20] 2026-01-27 04:41:20,409 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 23:41:20] 2026-01-27 04:41:20,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 23:41:20] 2026-01-27 04:41:20,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 23:41:20] 2026-01-27 04:41:20,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 23:41:20] 2026-01-27 04:41:20,410 | INFO     | [monitor] control thread has ended
[2026-01-26 23:41:20] 2026-01-27 04:41:20,493 [wrapper] ==== pilot stdout END ====
[2026-01-26 23:41:20] 2026-01-27 04:41:20,498 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 23:41:20] 2026-01-27 04:41:20,502 [wrapper] pilotpid: 9170
[2026-01-26 23:41:20] 2026-01-27 04:41:20,505 [wrapper] Pilot exit status: 0
[2026-01-26 23:41:20] 2026-01-27 04:41:20,520 [wrapper] pandaids: 6984042562
[2026-01-26 23:41:20] 2026-01-27 04:41:20,559 [wrapper] cleanup supervisor_pilot  2286 9171
[2026-01-26 23:41:20] 2026-01-27 04:41:20,563 [wrapper] Test setup, not cleaning
[2026-01-26 23:41:20] 2026-01-27 04:41:20,566 [wrapper] apfmon messages muted
[2026-01-26 23:41:20] 2026-01-27 04:41:20,570 [wrapper] ==== wrapper stdout END ====
[2026-01-26 23:41:20] 2026-01-27 04:41:20,574 [wrapper] ==== wrapper stderr END ====
[2026-01-26 23:41:20]  *** Error codes and diagnostics ***
[2026-01-26 23:41:20]     "exeErrorCode": 0,
[2026-01-26 23:41:20]     "exeErrorDiag": "",
[2026-01-26 23:41:20]     "pilotErrorCode": 0,
[2026-01-26 23:41:20]     "pilotErrorDiag": "",
[2026-01-26 23:41:20]  *** Listing of results directory ***
[2026-01-26 23:41:20] total 436100
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas      5111 Jan 26 00:14 queuedata.json
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-26 23:41:20] -rwx------ 1 boincer umatlas     36322 Jan 26 00:14 runpilot2-wrapper.sh
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas       100 Jan 26 22:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 23:41:20] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 22:28 run_atlas
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas       105 Jan 26 22:28 job.xml
[2026-01-26 23:41:20] -rw-r--r-- 2 boincer umatlas 255497376 Jan 26 22:28 EVNT.47929390._000198.pool.root.1
[2026-01-26 23:41:20] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 22:28 start_atlas.sh
[2026-01-26 23:41:20] drwxrwx--x 2 boincer umatlas      4096 Jan 26 22:28 shared
[2026-01-26 23:41:20] -rw-r--r-- 2 boincer umatlas    597758 Jan 26 22:28 input.tar.gz
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas         0 Jan 26 22:28 boinc_lockfile
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas      2550 Jan 26 22:28 pandaJob.out
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas        57 Jan 26 22:28 setup.sh.local
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas   1006433 Jan 26 22:28 agis_schedconf.cvmfs.json
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas   1516246 Jan 26 22:28 agis_ddmendpoints.agis.ALL.json
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas       445 Jan 26 22:28 workernode_map.json
[2026-01-26 23:41:20] drwx------ 5 boincer umatlas      4096 Jan 26 22:28 pilot3
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas      5953 Jan 26 23:36 init_data.xml
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas 185083629 Jan 26 23:40 HITS.47929392._005263.pool.root.1
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas       529 Jan 26 23:40 boinc_task_state.xml
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas        95 Jan 26 23:40 pilot_heartbeat.json
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas      1044 Jan 26 23:40 memory_monitor_summary.json
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas    390384 Jan 26 23:40 log.47929392._005263.job.log.tgz.1
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas      6419 Jan 26 23:40 heartbeat.json
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 23:40 boinc_mmap_file
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas        27 Jan 26 23:40 wrapper_checkpoint.txt
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas       744 Jan 26 23:41 pilotlog.txt
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas    630970 Jan 26 23:41 log.47929392._005263.job.log.1
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas       357 Jan 26 23:41 output.list
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas       620 Jan 26 23:41 runtime_log
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas   1034240 Jan 26 23:41 result.tar.gz
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas      9343 Jan 26 23:41 runtime_log.err
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas       659 Jan 26 23:41 hOnMDmy6T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd48KDmgxIzDm.diag
[2026-01-26 23:41:20] -rw-r--r-- 1 boincer umatlas     21257 Jan 26 23:41 stderr.txt
[2026-01-26 23:41:20] HITS file was successfully produced:
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas 185083629 Jan 26 23:40 shared/HITS.pool.root.1
[2026-01-26 23:41:20]  *** Contents of shared directory: ***
[2026-01-26 23:41:20] total 431880
[2026-01-26 23:41:20] -rw-r--r-- 2 boincer umatlas 255497376 Jan 26 22:28 ATLAS.root_0
[2026-01-26 23:41:20] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 22:28 start_atlas.sh
[2026-01-26 23:41:20] -rw-r--r-- 2 boincer umatlas    597758 Jan 26 22:28 input.tar.gz
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas 185083629 Jan 26 23:40 HITS.pool.root.1
[2026-01-26 23:41:20] -rw------- 1 boincer umatlas   1034240 Jan 26 23:41 result.tar.gz
23:41:22 (5494): run_atlas exited; CPU time 47262.491623
23:41:22 (5494): called boinc_finish(0)

</stderr_txt>
]]>

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